fgb (fgb,LOC107758871)


Basic Information

Item Value
gene id fgb
gene name fgb,LOC107758871
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 125530 ~ 130361 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910856.2
TGAAGCATACACAGCTGAACAGCAGGGTGACGATCTGTGTTAAAGCGTCCTGCTCTTTACAATGAagcttctcctcttcctcagtgtgtgtgtgtgtggagcgcTGGTTCAGGCGCATACTGAttatgatgatgaagatggtgtagAGGCGCCATCGCTGcccAAAGTGGAAGTCAAAGATCCTCGAGGTCACAGGCCTCTTGCCAGAGGTCGTGAGGTTTACACGCCTGTCGCTGCTCCACCTCCTGTTAGCGGACGAGGACGTTACGGACCGCGACCCACTGCAACAACAGTGAGACAGCCtcaggaggagaagaaggaaatTCCTGACAGTGGAGGATGTTTACATGGTTCAGAGACAATgGGTGTACTCTGTCCGACAGGCTGCGAACTGAAAACCACTTTGCTGAAGCAGGAGCGTGACGTTACACCTACAGTGGCTCAGCTCAAGAGAGACGTGGAAAATCTGTCACAGACCTCCAACTCTGTCTACAAATATGTGGAGGATCTGACCACAGAGgtcacagagagacagagaatcaACAACGGTAATGACGAGTTAGTTAGTCAGTACACAGATGACCTGGAGGGCCAGCATGCGTATGTGAAAGAAACAGTGGATGTCACTTTtccacaaaacattaaaatcctGCAGGGAGTCCTGGAGAAACTGCGGGAGAAGATTCAGCGTCTGGAGAAGGCTGTCACTTCTCAGAGGGAGAGGTGTGCTGAACCGTGTGTAGTGTCCTGCCCGATTCCGGTGGTGTCTGGAAAAGACTGCGAGGATGTTTTCAGGAATGGAGGAGAAACTTCTGAGATGTATCTGGTGCGCCCAGAATCCTCACAAGCAGCATACAAGGTCTACTGTGACCAGACAACCCAGAACGGAGgCTGGCTGCTTATTCAGAACCGTTTGGACGGTAGCGTGGACTTCGGCCGGCGATGGGATGAATACAAGAAAGGTTTTGGAAACGTTGCGTTTGATGTTGGGAAAGGTTACTGCGAAACTCCTGGCGAGTACTGGCTCGGTAATGACCGCATCAGTCAGATCACTAAGACGGGCCCAACTGAAGTCCTGATCGAGATGCAGGACTGGACAGGCACGAAGACATACGCTCAGTACCAGCAGTTCACCGTCCAAGGCGAGGCCACGAACTACATCCTGGCAGTGGATAAATACTCCGGCACGGCGGGAAACACCTTCCTCACCGGCGCAACAGAGCTGTTTGGTGTAAATCGCACCATGACTATCCACAACGGCATGATGTTCAGCACCTACGACAGAGACAATGACCGATGGGTACCTGGAGATCCGTCTAAGCAGTGTTCACGAGAAGATGGTGGTGGATGGTGGTACAACGCCTGCCATTCAGCCAACCCTAATGGCCGATACTACTGGGGCGGACCGTACACGAAAAACATGGCCAAACACGGAACAGACGACGGCATCGTGTGGATGAACTGGAAGGGCTCGTGGTACTCACTCAAGGCCATCAGCATAAAGATCAGACCCTACTTTGCtcagaaataacacacacacacatacacacacactcttcctgtGTGAAACAAGTACTCTTATTCAGCAAATGCCattttggaaaaagaaataagaatggaaaaaaagaaatagatgaTGATatcagtgaaatgaaaagatGATATCAGTGAAATATGAAGATAAGAACTGCATCAACAAACCTGCTTatgttcaaaataaaatgtattctgTGTGAACATTATATTGTGTTTGAATCTGATCATCTCAGTAAACTGtagaacatttt

Function

symbol description
fgb Predicted to enable signaling receptor binding activity. Acts upstream of or within blood coagulation, fibrin clot formation. Predicted to be located in extracellular region. Predicted to be part of fibrinogen complex. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in liver and yolk syncytial layer. Human ortholog(s) of this gene implicated in cardiovascular system disease (multiple); congenital afibrinogenemia; and end stage renal disease. Orthologous to human FGB (fibrinogen beta chain).

NR:

description
PREDICTED: fibrinogen beta chain

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0051258 protein polymerization biological_process
GO:0007165 signal transduction biological_process
GO:0005577 fibrinogen complex cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K03904 FGB; fibrinogen beta chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910856.2 True 1787 mRNA 0.49 8 125530 130361

Neighbor

gene id symbol gene type direction distance location
LOC113524573 lratb,LOC108258974,LOC108439370,LOC107758869,LOC107590749,LOC106608435 coding downstream 11790 92135 ~ 113740 (-)
LOC113524574 LOC108258977 coding downstream 33510 83803 ~ 92020 (-)
lratb.2 LOC108258976 coding downstream 41740 78214 ~ 83790 (-)
rbm46 rbm46 coding downstream 57213 59036 ~ 68317 (-)
npy2rl npy2rl,LOC108439369,LOC107714138,LOC107692719,LOC107758849,LOC106578155,LOC105030636 coding downstream 80346 38735 ~ 45184 (-)
rnf175 rnf175,LOC107665971,LOC107692639,LOC107714147 coding upstream 24120 154481 ~ 161981 (-)
pdia2 LOC108258683 coding upstream 98087 228448 ~ 234976 (-)
percc1 LOC108258685 coding upstream 104538 234899 ~ 244174 (-)
rgs11 rgs11 coding upstream 131792 262153 ~ 277683 (-)
elfn1b elfn1b,LOC108258545,LOC108439159,LOC107722936,LOC107590768,LOC107702506,LOC107714143 coding upstream 222092 352453 ~ 408289 (-)
G368685 NA non-coding upstream 48821 179182 ~ 184646 (-)
G368689 NA non-coding upstream 55473 185834 ~ 193914 (-)
G368713 NA non-coding upstream 113816 244177 ~ 244780 (-)
G368725 NA non-coding upstream 151078 281439 ~ 281903 (-)
G368903 NA non-coding upstream 448232 578593 ~ 581860 (-)
si:dkeyp-75b4.8 NA other upstream 72293 202654 ~ 227102 (-)
pmm2 pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664 other upstream 154502 284863 ~ 289908 (-)
rasd3 LOC108258668 other upstream 460775 591136 ~ 592595 (-)
prkcba prkcb other upstream 523092 653453 ~ 702345 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other upstream 739398 869759 ~ 948803 (-)

Expression


Co-expression Network