zgc:77880 (zgc:77880,LOC108258288,LOC107723165,LOC107692630,LOC108439367,LOC105904859,LOC107665980,LOC107758853,LOC105030638,LOC107590776)


Basic Information

Item Value
gene id zgc:77880
gene name zgc:77880,LOC108258288,LOC107723165,LOC107692630,LOC108439367,LOC105904859,LOC107665980,LOC107758853,LOC105030638,LOC107590776
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11862 ~ 18192 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910861.2
TGAACTACGTCATCCAGCCCAAACCCGGAAGTTGGGAATGGTAAGATGGCGCTACTGCGCTGTCGGCGAGACCCGTGCGGGTTTATCTGTCTCATTCTGACTTATTTTAGCGTATTTTACGCCGACTACGTTGTTATCCAGTATGTACTGATCCCAGCTTACTCTGGAAGTGTATGGTGCACACTTCATGGATCTGTCTTTAATGTCATATTACTGCTGCTTCTGGCTTGTCATTCGAAAGCTGTGTTCTCTGACCCAGgtatGGTTCCTCTTCCTGAGACAGCCATTGATTTCTCAGACTTGAGGTCTCAGTCCAGCCGTGTGAATGACAGGgGTTGTGAAGGCTGGACTGTGTGTAGTCGTTGTGAAACATATCGTCCTCCTCGTGCACATCACTGCCGAGTGTGTCAGCGTTGCATCAGACGCATGGATCACCACTGCCCATGGATCAATAATTGTGTTGGAGAACTCAACCAGAAGTACTTCATCCAATTTCTCTTTTATACTGGCATGGCCAGCCTGTACTCCATGGCTCTGGTGGTGTCGGCATGGGTGTGGCGGATACGGAGtgaaagagatggagatggagaaaaaGGTGAAGAGGATGTTCCCAGTAAGCATCTAATAGTGGCACATTACATCATCTTGTTAGTGGAGTCCATTCTGTTTGGCGTTTTTGTCCTGGTGATATTTTATGACCAGCTGGTGTCCATTATAACAGATGAGACACCCATTGAGCAGATGAGAAACAGACTGATGAAGGACAGACCCAACAGCGGGCAGTCAGTGCACACGACACACACCCGAAAACCTAAAGTTGCATTGCTGAGGGAGGTGTTTGGAAGAGgcTCTGTGCTGTGTTGGCTGTTACCGTTCCAGTCCTCTCCCCCGTCCGCTGGAGGAATCAGTTACTCACCTGTTCCTGATTACGATGTGTAAAGATGACCGACGTCAGCAGTACTTTACAGTTTTAATGATGAGAGTGTTTATTAAGTGTAGCACTGTGTGTTATGTAGTAGCTCTTAATCTGCGTACATACTCAAGTACGCACACACTGTTATCAAGTCGCAAGAGCTATTAAGTGAGAAATGTCacatttgttctttctttcattctttctttctttttctcagctatATGACTGTCTTTATCTGTCATCATGGCCTCTTAATGGTTTACTGTTGCAAATATAACAAACATAGGAATAGGGATGCTCaacagaatattaaaatattgaataaattattataaataattatgtagCTACTCTAGGCAGGCTGTAATTATATTAGCTACTGTAAAGTCTGTTCCACAGTCGTGTCTGGTACATATGTTTAATGCATGAAAAATGCATCGGTTTCTTCAAATTTACTTTTGCAAATGAAGGcaaaactgtttatttaacGTCAAACACTATAATATACTTGAATATAGATTCCGAGAAGGTTTCACACGTTTCTCAGCGAGCTGTATCGGTGTTGAAATACAGTAGAAAATGAAGCAGCAGTATctctaacaccaacactgtgtTACTTAAATCAGAGCCAGTCCTGTAGTGGAATAAAGTTGCTGTTGCTTGGGgcttttaattaaacaatgttAAGAGACCCACTGAACGTTACTGACATCTGACTTGTACTGaaagtgtttgtttctttctcaattgaacattcatttttatttatttatttttattcagtgatCTGTCAGTCACTTCGTTTTGAGTCTATAGGTgtagtttttaaatgtatataaatgtattttatagcAGTTGATGCAGGGAAAGTGTTGGAGCATTTTCAGGGTACTGGCTTCAGTTATTcgagtgctttgagttttctttgtgtaatttgtaacaCATTTATATTGCTGTTTGGCAGATTGAAGGATGCTAATGTAAGATGTTTACactgatatttatttactttaactgTCTAAATGCTGCTGAATTAAAGTAAAGGACAACTTTTAA
>XM_034299967.1
GGAGTGACCCGGTGCTGCAGCAGGTagtgctcctcctcctcctcctcctcgcagctcgggttactgcctgtggaggttctgtgcatgttctctccgggttctccggtttccttccacaTCCCCCAAACACGCTATGTATGGTGCACACTTCATGGATCTGTCTTTAATGTCATATTACTGCTGCTTCTGGCTTGTCATTCGAAAGCTGTGTTCTCTGACCCAGgtatGGTTCCTCTTCCTGAGACAGCCATTGATTTCTCAGACTTGAGGTCTCAGTCCAGCCGTGTGAATGACAGGgGTTGTGAAGGCTGGACTGTGTGTAGTCGTTGTGAAACATATCGTCCTCCTCGTGCACATCACTGCCGAGTGTGTCAGCGTTGCATCAGACGCATGGATCACCACTGCCCATGGATCAATAATTGTGTTGGAGAACTCAACCAGAAGTACTTCATCCAATTTCTCTTTTATACTGGCATGGCCAGCCTGTACTCCATGGCTCTGGTGGTGTCGGCATGGGTGTGGCGGATACGGAGtgaaagagatggagatggagaaaaaGGTGAAGAGGATGTTCCCAGTAAGCATCTAATAGTGGCACATTACATCATCTTGTTAGTGGAGTCCATTCTGTTTGGCGTTTTTGTCCTGGTGATATTTTATGACCAGCTGGTGTCCATTATAACAGATGAGACACCCATTGAGCAGATGAGAAACAGACTGATGAAGGACAGACCCAACAGCGGGCAGTCAGTGCACACGACACACACCCGAAAACCTAAAGTTGCATTGCTGAGGGAGGTGTTTGGAAGAGgcTCTGTGCTGTGTTGGCTGTTACCGTTCCAGTCCTCTCCCCCGTCCGCTGGAGGAATCAGTTACTCACCTGTTCCTGATTACGATGTGTAAAGATGACCGACGTCAGCAGTACTTTACAGTTTTAATGATGAGAGTGTTTATTAAGTGTAGCACTGTGTGTTATGTAGTAGCTCTTAATCTGCGTACATACTCAAGTACGCACACACTGTTATCAAGTCGCAAGAGCTATTAAGTGAGAAATGTCacatttgttctttctttcattctttctttctttttctcagctatATGACTGTCTTTATCTGTCATCATGGCCTCTTAATGGTTTACTGTTGCAAATATAACAAACATAGGAATAGGGATGCTCaacagaatattaaaatattgaataaattattataaataattatgtagCTACTCTAGGCAGGCTGTAATTATATTAGCTACTGTAAAGTCTGTTCCACAGTCGTGTCTGGTACATATGTTTAATGCATGAAAAATGCATCGGTTTCTTCAAATTTACTTTTGCAAATGAAGGcaaaactgtttatttaacGTCAAACACTATAATATACTTGAATATAGATTCCGAGAAGGTTTCACACGTTTCTCAGCGAGCTGTATCGGTGTTGAAATACAGTAGAAAATGAAGCAGCAGTATctctaacaccaacactgtgtTACTTAAATCAGAGCCAGTCCTGTAGTGGAATAAAGTTGCTGTTGCTTGGGgcttttaattaaacaatgttAAGAGACCCACTGAACGTTACTGACATCTGACTTGTACTGaaagtgtttgtttctttctcaattgaacattcatttttatttatttatttttattcagtgatCTGTCAGTCACTTCGTTTTGAGTCTATAGGTgtagtttttaaatgtatataaatgtattttatagcAGTTGATGCAGGGAAAGTGTTGGAGCATTTTCAGGGTACTGGCTTCAGTTATTcgagtgctttgagttttctttgtgtaatttgtaacaCATTTATATTGCTGTTTGGCAGATTGAAGGATGCTAATGTAAGATGTTTACactgatatttatttactttaactgTCTAAATGCTGCTGAATTAAAGTAAAGGACAACTTTTAA

Function

symbol description
zgc:77880 Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in peptidyl-L-cysteine S-palmitoylation and protein targeting to membrane. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum.

NR:

description
PREDICTED: palmitoyltransferase ZDHHC3-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20029 ZDHHC3_7_25; palmitoyltransferase ZDHHC3/7/25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910861.2 True 1972 mRNA 0.41 9 11862 18192
XM_034299967.1 False 1936 mRNA 0.41 9 11862 17981

Neighbor

gene id symbol gene type direction distance location
eif3f eif3f,LOC107723164,LOC107758850,LOC107665937 coding upstream 2754 20946 ~ 24187 (-)
npy2rl npy2rl,LOC108439369,LOC107714138,LOC107692719,LOC107758849,LOC106578155,LOC105030636 coding upstream 20543 38735 ~ 45184 (-)
rbm46 rbm46 coding upstream 40844 59036 ~ 68317 (-)
lratb.2 LOC108258976 coding upstream 60022 78214 ~ 83790 (-)
LOC113524574 LOC108258977 coding upstream 65611 83803 ~ 92020 (-)
G368685 NA non-coding upstream 160990 179182 ~ 184646 (-)
G368689 NA non-coding upstream 167642 185834 ~ 193914 (-)
G368713 NA non-coding upstream 225985 244177 ~ 244780 (-)
G368725 NA non-coding upstream 263247 281439 ~ 281903 (-)
G368903 NA non-coding upstream 560401 578593 ~ 581860 (-)
si:dkeyp-75b4.8 NA other upstream 184462 202654 ~ 227102 (-)
pmm2 pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664 other upstream 266671 284863 ~ 289908 (-)
rasd3 LOC108258668 other upstream 572944 591136 ~ 592595 (-)
prkcba prkcb other upstream 635261 653453 ~ 702345 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other upstream 851567 869759 ~ 948803 (-)

Expression


Co-expression Network