LOC113524574 (LOC108258977)


Basic Information

Item Value
gene id LOC113524574
gene name LOC108258977
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 83803 ~ 92020 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910885.2
acattattattgttattgctagcgcagttacaatggagtttaacaggaaaaaatatatacacatagcAATAACGGTCAGGTTTCAcggttagctcctaaaaacaaaacttcttTTCTCACGTATTAATGAGAAATGCAGCGTAGCTGTAGCGGAGACGTCGGAGCAAATTCTGAACTCacagtcccagaatgcaatgcagcatacagcagagactcggcttGGCTAGTTAGTTCCCAGATTTCCTCTTGGGGATCAATAAGTACGTCCGTGTATCTAGTTAGCGATGTGTGAGATGGCGAGTTCGGTGTTAGTGTGAgagctgaagctttggaagctgatgtgtttgagcagagtgaacagatgaggaggagagagagatggacagagtaaagcactaaagcgccgccgcatcatcgctctctttaggaaGAGATGAGGCGAGGGTGAAATCCCACTGCACCTCTAGctgaacggcattgtgggtaatgtaggaaacttaaccaaagtgaaaatagacagACGTTTCCATGAAAGAAGTTCAATGATGTTTGATGAGTGACCTCGTTAAGAACTAAAGTctgttaaatttaaataaaaactaaatttgtattaatgtgaGTAACCTGATTGTATGAACGCGTCTTCACTGAGCTAAAGCACTTTATCTGTGTTTTTAGGTACTGTAGTGCTCATGATTCAGTTTCCTCTTTTTCTAAGCACCTGAATCTCATTCtccttttttactttaaataaataaataaataaaccggTGGCCACACCCCCATGCCCTTCTCTCCGTATAAGAACTAGAAAACCCCAGTGCAGCTTTCCTCTTTTCGTCTGGATTTTGAGGCCAGCTCGTCTGGAAATGATTACTGCTTTTCCCCAGAAGGATGTCGAACACAGACACACGCTGCTGTTTggagATTCTGACGTCACTGTGAGGAGAACCGTGAGCGCGCGCCACTTCCTCTTTGGAGAGGCAGAAAGCGGAGGAGAGGAGCGGAGACTCGGGCATGATGTTGGACtctttgctgctgctgttgcagaAGATCTTCCTGTTTGCGCACTGGGACTTTTTCAGCGTCGTGGCATCGAGAGCCGACAAGCCGAGGCGCGCGGACAGGACGGACAGGACGGAGCGCGCGGGAGCGGAAGTCACGGCGCAGCTCGAGCGCGGAGATCTGCTCGAAGTTCCCCGCACGCTGTTCGTGCACTTCGGGATCTACTTGGGCGACGGGAAGGTGGCGCACCTCATCCCCGACATCCTTCCGCTGCTCACGCGCGATGAGCTCCGCGTCCGCGCCGTCGTGAGCAACAAGCGGCTGCTGCTGGGAGTGCTGTGCCGCAGAGCCGCCGTGCGCGTCGACACGCTCGAGGACTTCGTGTACGGGGCGCGCGTGCTGCTCATCAACGCCATGGACGGAGTGCTCGGTGTGCGGCCCGCGCCTAACGAGGAGGTCGCGCGCACGGCGGAAAAACTGATCGGCGCTGTTCGCTACAGCCTCCTGTGGAACAACTGCGAGCACTTCGTCACCTTCTGCCGATACGGTACCGGGATCAGCCTGCAGACCGACAAGTTTTGTGAGTGCCTGAAATCTGTTATCCGGGATCAGAGGAGTGTCCTGCTCACTACAGTCATCGGAATAATTTCCATATTGTTCGTGGGATTATCCGTATCCACAGCACTTCCTGTCCTTCTAATTTCCTTCATCCTCTGGATGGCCGGATAAGAGACTTTTATTATCGTGTCTACATCATGCTTCATTACATCTGTGTTCAGTTTAACACAGGTTTgccgaagtgtgtgtgtgtgtgtgtgtgtgttgtagtgagaTATCACTAAACTGTACTGACAGTGACTCAGTGCTGCtctaatatgtttatatgtttactgAAGTTTAACAGTTTTATGTTAATCACGTATGTTTTTGTACTCTACTCATTTAATGCTAATAAATGTTTAGAACTGA
>XM_034300290.1
CTGTGTTCAGGACATGTGATTGGCTAgctgtgaatttttttctaaagagTAGGAGGTGTTATCAGAGTGTACTCAGTGTCTGTTAACAGTTTTCTGAAGATGCTGAAGCAGACGACTTCCTGTAGCAGAGGTGATGCTAAAGCCATAAAGCTTTTGAAGTTTGGACCTCTAAGCTTATCTTCTATCTGTTCACACAGGAAATTCTGACGTCACTGTGAGGAGAACCGTGAGCGCGCGCCACTTCCTCTTTGGAGAGGCAGAAAGCGGAGGAGAGGAGCGGAGACTCGGGCATGATGTTGGACtctttgctgctgctgttgcagaAGATCTTCCTGTTTGCGCACTGGGACTTTTTCAGCGTCGTGGCATCGAGAGCCGACAAGCCGAGGCGCGCGGACAGGACGGACAGGACGGAGCGCGCGGGAGCGGAAGTCACGGCGCAGCTCGAGCGCGGAGATCTGCTCGAAGTTCCCCGCACGCTGTTCGTGCACTTCGGGATCTACTTGGGCGACGGGAAGGTGGCGCACCTCATCCCCGACATCCTTCCGCTGCTCACGCGCGATGAGCTCCGCGTCCGCGCCGTCGTGAGCAACAAGCGGCTGCTGCTGGGAGTGCTGTGCCGCAGAGCCGCCGTGCGCGTCGACACGCTCGAGGACTTCGTGTACGGGGCGCGCGTGCTGCTCATCAACGCCATGGACGGAGTGCTCGGTGTGCGGCCCGCGCCTAACGAGGAGGTCGCGCGCACGGCGGAAAAACTGATCGGCGCTGTTCGCTACAGCCTCCTGTGGAACAACTGCGAGCACTTCGTCACCTTCTGCCGATACGGTACCGGGATCAGCCTGCAGACCGACAAGTTTTGTGAGTGCCTGAAATCTGTTATCCGGGATCAGAGGAGTGTCCTGCTCACTACAGTCATCGGAATAATTTCCATATTGTTCGTGGGATTATCCGTATCCACAGCACTTCCTGTCCTTCTAATTTCCTTCATCCTCTGGATGGCCGGATAAGAGACTTTTATTATCGTGTCTACATCATGCTTCATTACATCTGTGTTCAGTTTAACACAGGTTTgccgaagtgtgtgtgtgtgtgtgtgtgtgttgtagtgagaTATCACTAAACTGTACTGACAGTGACTCAGTGCTGCtctaatatgtttatatgtttactgAAGTTTAACAGTTTTATGTTAATCACGTATGTTTTTGTACTCTACTCATTTAATGCTAATAAATGTTTAGAACTGA
>XM_034300291.1
CTGTGTTCAGGACATGTGATTGGCTAgctgtgaatttttttctaaagagTAGGAGGTGTTATCAGAGTGTACTCAGTGTCTGTTAACAGTTTTCTGAAGATGCTGAAGCAGACGACTTCCTGTAGCAGAGATTCTGACGTCACTGTGAGGAGAACCGTGAGCGCGCGCCACTTCCTCTTTGGAGAGGCAGAAAGCGGAGGAGAGGAGCGGAGACTCGGGCATGATGTTGGACtctttgctgctgctgttgcagaAGATCTTCCTGTTTGCGCACTGGGACTTTTTCAGCGTCGTGGCATCGAGAGCCGACAAGCCGAGGCGCGCGGACAGGACGGACAGGACGGAGCGCGCGGGAGCGGAAGTCACGGCGCAGCTCGAGCGCGGAGATCTGCTCGAAGTTCCCCGCACGCTGTTCGTGCACTTCGGGATCTACTTGGGCGACGGGAAGGTGGCGCACCTCATCCCCGACATCCTTCCGCTGCTCACGCGCGATGAGCTCCGCGTCCGCGCCGTCGTGAGCAACAAGCGGCTGCTGCTGGGAGTGCTGTGCCGCAGAGCCGCCGTGCGCGTCGACACGCTCGAGGACTTCGTGTACGGGGCGCGCGTGCTGCTCATCAACGCCATGGACGGAGTGCTCGGTGTGCGGCCCGCGCCTAACGAGGAGGTCGCGCGCACGGCGGAAAAACTGATCGGCGCTGTTCGCTACAGCCTCCTGTGGAACAACTGCGAGCACTTCGTCACCTTCTGCCGATACGGTACCGGGATCAGCCTGCAGACCGACAAGTTTTGTGAGTGCCTGAAATCTGTTATCCGGGATCAGAGGAGTGTCCTGCTCACTACAGTCATCGGAATAATTTCCATATTGTTCGTGGGATTATCCGTATCCACAGCACTTCCTGTCCTTCTAATTTCCTTCATCCTCTGGATGGCCGGATAAGAGACTTTTATTATCGTGTCTACATCATGCTTCATTACATCTGTGTTCAGTTTAACACAGGTTTgccgaagtgtgtgtgtgtgtgtgtgtgtgttgtagtgagaTATCACTAAACTGTACTGACAGTGACTCAGTGCTGCtctaatatgtttatatgtttactgAAGTTTAACAGTTTTATGTTAATCACGTATGTTTTTGTACTCTACTCATTTAATGCTAATAAATGTTTAGAACTGA

Function

GO:

id name namespace
GO:0042572 retinol metabolic process biological_process
GO:0047173 phosphatidylcholine-retinol O-acyltransferase activity molecular_function

KEGG:

id description
K00678 LRAT; phosphatidylcholine-retinol O-acyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910885.2 True 1974 mRNA 0.49 3 83803 92020
XM_034300290.1 False 1247 mRNA 0.52 3 83803 91043
XM_034300291.1 False 1177 mRNA 0.53 3 83803 91043

Neighbor

gene id symbol gene type direction distance location
lratb.2 LOC108258976 coding downstream 13 78214 ~ 83790 (-)
rbm46 rbm46 coding downstream 15486 59036 ~ 68317 (-)
npy2rl npy2rl,LOC108439369,LOC107714138,LOC107692719,LOC107758849,LOC106578155,LOC105030636 coding downstream 38619 38735 ~ 45184 (-)
eif3f eif3f,LOC107723164,LOC107758850,LOC107665937 coding downstream 59616 20946 ~ 24187 (-)
zgc:77880 zgc:77880,LOC108258288,LOC107723165,LOC107692630,LOC108439367,LOC105904859,LOC107665980,LOC107758853,LOC105030638,LOC107590776 coding downstream 65611 11862 ~ 18192 (-)
LOC113524573 lratb,LOC108258974,LOC108439370,LOC107758869,LOC107590749,LOC106608435 coding upstream 115 92135 ~ 113740 (-)
fgb fgb,LOC107758871 coding upstream 33510 125530 ~ 130361 (-)
rnf175 rnf175,LOC107665971,LOC107692639,LOC107714147 coding upstream 62461 154481 ~ 161981 (-)
pdia2 LOC108258683 coding upstream 136428 228448 ~ 234976 (-)
percc1 LOC108258685 coding upstream 142879 234899 ~ 244174 (-)
G368685 NA non-coding upstream 87162 179182 ~ 184646 (-)
G368689 NA non-coding upstream 93814 185834 ~ 193914 (-)
G368713 NA non-coding upstream 152157 244177 ~ 244780 (-)
G368725 NA non-coding upstream 189419 281439 ~ 281903 (-)
G368903 NA non-coding upstream 486573 578593 ~ 581860 (-)
si:dkeyp-75b4.8 NA other upstream 110634 202654 ~ 227102 (-)
pmm2 pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664 other upstream 192843 284863 ~ 289908 (-)
rasd3 LOC108258668 other upstream 499116 591136 ~ 592595 (-)
prkcba prkcb other upstream 561433 653453 ~ 702345 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other upstream 777739 869759 ~ 948803 (-)

Expression


Co-expression Network