lratb.2 (LOC108258976)


Basic Information

Item Value
gene id lratb.2
gene name LOC108258976
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 78214 ~ 83790 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910890.2
TATCattagatagatcactttattaatcccagagggaaattcacacactacagctgCAGCAGAAGAAGAATAGTGTTTGCAGTGAGAAATAATCAAgagtaatgaaataaacatattcaGTAAGATACCATAATCTACAAAttagagaataaaacacatcagatccACTCTCGTGAGAAAAACAATCCTGTGTGCGGTCATGCCCTTACTTGTGTTGGTATGTAACAtatgcgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtttaacacaagtttaaaaagaaaatcggGTAAAATGATATGTATATGATAAATGATGTACAAGTTGTGTGTCTGCAGCCTGAGAAAAGCCCGATGGAGTGAGAAATGTGCCACTGCagtctgaattttatttttatttattatttttatgcctCTATTTGAATTTGTAATTGAAGTTATGTAGTTGAATTAGATCAAATTGAAATTATGTTCCAGATGTTATGTTCAAATTCTTCGTTTTGGTGACagaatttatttcacattcagaTAAAAAATGTCAGAACACATCTGGAGAGTAATAGAGTTCTGTTATAGAGTTCTTCAGCGTCCTCAGGGAACTCAGATTGTGTAACGTTGTGTAAAAGGacgtttttatatttatacaagGATTTGAGAGAATTAAAAGTTCACAGTTGCACCACGCTGACCTGACCTCAACCAAAAATAGAAACtgatttctgtttttgcatttcTCCTTATTTTTTGTCCCCTTTAGTGAGGAGTGGAGCTGAAGTTGAGTAACccattgtgtattgtgtttcaCTGAACATGTGACATTCTTTTCTATAAATCTGTATGAGAATAGGTCCAGGTCTGTAATCCCCACGCCCCTCCTCAGCCTCCGCATGGAGGATAAAACCTTCACAAGCCTTTCAGAAACACAGCTCATCTCTCAGACGATGTTTCTCCTCCAGTTCCTCTGTGGCTTTTTCACAGCGCTGATCACAGACGAGGACAAAAAGAAGTTGAAACCAGACACATATGACATCTCCATGTTTAAGCGGGGGGATCTCCTGGAGGTTCCCCGAACGCTCTTCACACATTTTGGGATCTACCTGGGCAACAACCGTGTGGCTCACCTCATTCCTGACATCCTGCCCCTTATCTCAGCTGATGAAAGTGCCATCTCCAAGATGGTGACCAACAATCGGCTGATTCTGGGTGTGATCGCAAAAAAGGCCAGCATTCgtgtggactctgtggaggacTTTGCGTACGGAGCTGAGATTCTGGTGAACAGCATGGACAGGGTGTGCAGTTGGCCGCCGCTCCAGGGTGAAGAAGTGGCCAGGCGAGCGGAGAAGCTGATGGGATCCATGGACTACAGTCTGCTGTGGTTCAACTGTGAACATTATGTCATGTTCTGCAGATATGGAACCAGCGTGAGCTTTCAGACCTACCAGTTCTGTAAAAGGGTCAGGAAGATCGTGTTCAGTAGGACCAGCTCGTTCCTGAgtcttgtgttgtgtgtgttcattacgGTGTTTCTgggcagtgtgtctgtgtgtggagtgttacTCACACTGATCATTCCCTTCACCATATGGATGGCATCATAACTCTCTCTCCAAGTTATTACAGGTCATGGTTTAGTGATGTCCATGTAATTTATTGCATTAATATTACTGAACACTGTAATGTAGATTAGGAGTTATCACTGTGTGTTCATCTCACTACTGATACATATtccaaatgtataaatatatatatttagagtAGAATATAAAATCTACATCATGTTGATGGAAACTTCCAGATTGAGTGTGAACATTGAATCTTATGTGAGAAAATCtgaagtaatttatttttatactgtacaaTAAACACAACTGGGCAGCACAGTAGCGTTCCCTCCTCATGGTTGTGGTTCGAGCCTGAGCTCGACTTCTTCCTATGTCCAtgtgggcttcctctgggttctctggtttcgtCCCACCTCCTAAAAGCATGCCAGTgtgtggattggctaagataaattccAAAAGTGTGAATGAGCCTGTGGATGGGCGCGTGGATGGGCGCATGAATGAGTGTGGATGGGCGCGTGGATGAGTGTGGATGGGCGAGTGGATGAGTGTGGATGAGAGTG

Function

GO:

id name namespace
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910890.2 True 2134 mRNA 0.42 2 78214 83790

Neighbor

gene id symbol gene type direction distance location
rbm46 rbm46 coding downstream 9897 59036 ~ 68317 (-)
npy2rl npy2rl,LOC108439369,LOC107714138,LOC107692719,LOC107758849,LOC106578155,LOC105030636 coding downstream 33030 38735 ~ 45184 (-)
eif3f eif3f,LOC107723164,LOC107758850,LOC107665937 coding downstream 54027 20946 ~ 24187 (-)
zgc:77880 zgc:77880,LOC108258288,LOC107723165,LOC107692630,LOC108439367,LOC105904859,LOC107665980,LOC107758853,LOC105030638,LOC107590776 coding downstream 60022 11862 ~ 18192 (-)
LOC113524574 LOC108258977 coding upstream 13 83803 ~ 92020 (-)
LOC113524573 lratb,LOC108258974,LOC108439370,LOC107758869,LOC107590749,LOC106608435 coding upstream 8345 92135 ~ 113740 (-)
fgb fgb,LOC107758871 coding upstream 41740 125530 ~ 130361 (-)
rnf175 rnf175,LOC107665971,LOC107692639,LOC107714147 coding upstream 70691 154481 ~ 161981 (-)
pdia2 LOC108258683 coding upstream 144658 228448 ~ 234976 (-)
G368685 NA non-coding upstream 95392 179182 ~ 184646 (-)
G368689 NA non-coding upstream 102044 185834 ~ 193914 (-)
G368713 NA non-coding upstream 160387 244177 ~ 244780 (-)
G368725 NA non-coding upstream 197649 281439 ~ 281903 (-)
G368903 NA non-coding upstream 494803 578593 ~ 581860 (-)
si:dkeyp-75b4.8 NA other upstream 118864 202654 ~ 227102 (-)
pmm2 pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664 other upstream 201073 284863 ~ 289908 (-)
rasd3 LOC108258668 other upstream 507346 591136 ~ 592595 (-)
prkcba prkcb other upstream 569663 653453 ~ 702345 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other upstream 785969 869759 ~ 948803 (-)

Expression


Co-expression Network