fscn1b (LOC108258690)


Basic Information

Item Value
gene id fscn1b
gene name LOC108258690
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 897224 ~ 902489 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928831.2
CGCTGCCTCGATGCGCGCGCCGGCCAGGTGCCGCGCGCTCACGGTAGCTTACGGATGATGCAGCGCGCGCACTTGCTTTTATTCAGAGACGTGGAAATAAGAGGAAAGGGGGAGAAAAGCAGCTGGtaaaccatctctctctctctctctctctctctcacacacacaccagcacacggacacgcgcgcacacacaaagCTATCGGTCACACCCACCCGGACTCCcacaaaaaaattctgaaaatctgtaaaagaaaatggctTCCGGAGGTTTAGGGGAGAGCACAGTCATTCAGCTCGGCCTGATCAATGCAGAAGACAAGTATCTGACCGCGGAGGCGTTCGGCTTCAAAGTGAACGCGTGCGCCACGTCCATGCGTAAGAAGCAGGTGTGGACGCTGGAGCACGCGGACCAGGCGGGAGACTCCAGCTCGGTCCTCCTGCGCAGTCACCTGGGTCGCTACCTGTCCGCCGACAAGGACGGCAACGTGACGGCTGAGTGCGAGCGACCCTCCCCGGACTGCCGCTTCTGCGTGGTGGCGCACGCCGACGGCCGCTGGTCTCTGCGCTCCGAGGCGCACGGCCGCTACCTGGGAGGCGCCGAGGACCGCGTGCTGTGCTCCGCCACCGACGAGAAGTGGTGCGTGCACCTCGCCACGCACCCGCAGGTCAACCTGTACAGCGTGGCGCGCAAGCGTTACCTGCACGCGCACCCCGGGCGCGGCGAGCTCGCGGCGGACCGCGATGCACCCTGGGGCGTGGGCTCCGTGCTCACCCTGGTGTACCGGGAGCGCCGCTACCACCTGCAGACCGCCGGCGGCCGCTTCCTCGCGAGCACCGGCGCGCTGGTTCCTGAGCCGCGGGACGACACCGGATTCACGCTGGAGTTCCGCGCGGGCACGGTGGCGTTCCGGGACGCCGCGGGGAGATACCTGGCGCCCTCCGGCCCGAGCGGCGCGGTCAAGGCGGGGAAAAGCGTCCGCGTGGGTAAAGACGAGGCGCTCGTGCTGGAGAGAAGCCGCGGGCAGGTCGCGCTCACCGCCAGCAACGACAGGAACGTGTCCATGCGCCAGGGCGTAGAtctatcagccaatcaggatgAAGAGTCGGATCAGGAAGTCTTCCAGATGGAGGTGGACCAGGAGACGAAGCGCTGTGCTTTCAGGGCCTGCAACGGGAAATACTGGAGTCTCACTCCGAGTGGAGCGATCCAGTGCACTGCGTCTGAAAAATCAGACAGCTGCTTCTTTGAGTTGGAGTGGAAAGGAGCGAAGGTCACCCTCAAGGCCAGTAACGGCAAATACTTAGCAGCTAAGAAGAACGGCCAGCTGGCAGCCTCCGTGgactgtgcagGTGAACAGGAGGAGTTTGTTTTGAAACTCATTAATAGGCCGTTAATAGTTCTGCGTGGGGAAGACGGCTTCATTGGTTGTCGTAAGCAAGGCACTGGAACTCTGGACTCCAACCGTTCTTCCTACGACGTCTTCCAGTTAGAGTATAACAACAATGCCTACTGTCTCCGAGaCTCTACAGGGAAGTACTGGATGGTGGAGGCTGATGGTGTTGTCGTGAGCAGCAGCGCCACTCCGgtctacttcctgtttgagtTCTGTGATTATAACAGAGTGGCCATTAAGACACAACAGGGCCTTTATCTGAAGGGAGACCATGCTGGGGTGCTGAAGGCTAATGCACGGGGTATTGCTAATGCTACGCTGTGGGAgtactaaaacacacacacacacacacacacacacacacacacacacacctgactgtGAAAGTGACTtaccctacgttcacactagcaagtgacagcCGACTATTAATTTTCTCCCTACGTGTGTGACAGATTTccactttagttcctacctgcagttagttcctaCTGCTTGATGCTcaaacacag

Function

NR:

description
PREDICTED: fascin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928831.2 True 1909 mRNA 0.59 5 897224 902489

Neighbor

gene id symbol gene type direction distance location
tlr2 tlr2 coding downstream 185909 703199 ~ 711315 (-)
LOC113535779 cacng3,LOC108258515,LOC108439097 coding downstream 245796 645476 ~ 651428 (-)
plk1 plk1,LOC107722962,LOC107702528 coding downstream 307828 582498 ~ 589396 (-)
chtf18 chtf18,LOC107725360 coding downstream 339012 544258 ~ 558212 (-)
uncx4.1 LOC108258667 coding downstream 372159 518604 ~ 525065 (-)
smcr8b LOC108258855 coding upstream 61366 963855 ~ 969617 (-)
mief2 mief2,LOC108258856,LOC107722977,LOC107725398 coding upstream 68303 970792 ~ 979232 (-)
alkbh5 alkbh5 coding upstream 78381 980870 ~ 986570 (-)
myo15ab LOC108258396,LOC107725350,LOC107692700,LOC108441473,LOC108439093 coding upstream 85266 987755 ~ 1026021 (-)
cacna1hb LOC108258317 coding upstream 149901 1052390 ~ 1113599 (-)
G369130 NA non-coding downstream 22021 871589 ~ 875203 (-)
G368944 NA non-coding downstream 195936 701084 ~ 701288 (-)
G368912 NA non-coding downstream 224194 671640 ~ 673030 (-)
G368903 NA non-coding downstream 315364 578593 ~ 581860 (-)
G368725 NA non-coding downstream 615321 281439 ~ 281903 (-)
LOC117596193 NA non-coding upstream 364217 1266706 ~ 1270425 (-)
G369243 LOC108258881,LOC108261507 non-coding upstream 374584 1277073 ~ 1277650 (-)
G369298 NA non-coding upstream 462874 1365363 ~ 1375213 (-)
G369297 NA non-coding upstream 467645 1370134 ~ 1396598 (-)
G369302 NA non-coding upstream 482432 1384921 ~ 1385662 (-)
prkcba prkcb other downstream 194879 653453 ~ 702345 (-)
rasd3 LOC108258668 other downstream 304629 591136 ~ 592595 (-)
pmm2 pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664 other downstream 607316 284863 ~ 289908 (-)
si:dkeyp-75b4.8 NA other downstream 670122 202654 ~ 227102 (-)
G369125 actb other upstream 9064 911553 ~ 915683 (-)
G369242 LOC108258881 other upstream 373532 1276021 ~ 1276813 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other upstream 635964 1538453 ~ 1611666 (-)
G369586 NA other upstream 873830 1776319 ~ 1795224 (-)
mdh1b mdh1b other upstream 921715 1824204 ~ 1832729 (-)

Expression


Co-expression Network