elfn1b (elfn1b,LOC108258545,LOC108439159,LOC107722936,LOC107590768,LOC107702506,LOC107714143)


Basic Information

Item Value
gene id elfn1b
gene name elfn1b,LOC108258545,LOC108439159,LOC107722936,LOC107590768,LOC107702506,LOC107714143
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 352453 ~ 408289 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929006.2
aaccaaaaaaaacacgGGATCGCAGTGCTGGACTTTTCAAGTGCGCAAGAATCTATACGGAGGGTCTTCacacgctgacacacacacacacacacacacacacacacacacacacagtacgcAGTGTTGAGCATGGGAACATGTACAGAACTTCCAGAAGCACAGCTCTGAAGggtccAAGATGACGGAAATGGGGCGTAAAAACCAGCAATTGTTCACCAGCAACTTAGGGAGCACCACAGTGGTTCAATCTGACCAGAAGTTGTACAAATCTGAGATCATAACTGGACGTCCTTTTCACGTGTAAAAAGGCAACTGAGACGTCCAGCTTCCATCAAATCTGATTTGACTATTCTTCTGAAGGAACAGTCCAGATCAGCTCAATTGCTGAAAAGCGTTAAAGTGGACGTTACAGGTGTGACAGGATTGCAAAAGTAAAGTAGCTTTCTGTAAATTTTCTTCTCTCAGAGGGTGAACCTGTGCTATCACCTGTATGAACCATGAAGGAAACACACATGACAAGTTCAGCTCAGTCAAGTGGAAGTGTTAGAGGTGTAGTGACCAGTGCCTTACTCTGGTGGACCatggctgttttctttttttcattttcacagatGCCAGTGGCCCAAGCTGATTGTTGGCTAATTGAAGGGGAGAAAGGTTTTGTGTGGCTGGCAATCTGCAGCCAGAACCAGCCACCATATGAAGCAATTCCACTACATATCAACAGCACTATTGTTGACCTACGACTCAATGAAAACAAGATTCGGAGCATCCATTTTTCTGCTCTAAGCCGCTTCAGCAACCTCACCTACCTGAACTTGACCAAGAATGACATCTCCTACATAGAAGATGGGGCTTTCTCTGCTCAGTTCAATTTGCAAGTGCTGCAAATTGGTTTTAACAAGCTAAGGAACTTAACGGAGGGTATGCTGCGAGGCTTGGGGCGTCTGCAGTACCTCTACCTTCAAGCTAACCTGATTGAGACTGTCTCACCTAATGCTTTCTGGGAGTGTCCTGCTATTGAGAATATTGATCTCTCCATGAACAGGATTCAGCAGTTGGATGGAAATACGTTTCGTGGTTTATCAAAGCTAACAACATGTGAGCTCTACTCAAACCCGTTCACATGCTCCTGCGAGCTACTCGGATTCCTGCGCTGGTTAGTAGCATTCCCTAACAGGACAAGCGAGAGGATGGTATGCGATACACCAGCTGGCTTTTCTGGCTACAGCCTCTTAAGCCAAAATCCAGGGATGCCAACATACCGGAATGCTTTCCACGCTCTCTCTACTGTCTGCACGGATGACAATGTGACCCCATACCTGCTTGGATCTTCAGACGGAGGCACCCCCACAATCCTGCCAGATCTGAGCCCTTGTGGATTGGAAGACTGCCCTTCAGGGACACCTCCAGATGAGCTTATTAGCATCAGCCCAACGTATTTCGACCCAGACGCCCGCCCAATCATGAAGCTTAAAGAGGTGACACACACAAGTGCAGTTATCACAATCCAAATACCAAACCCTTTCCGAAAGATGTATATTCTGGTCCTTTACAACAACAGCTTTTTTACAGATATACAGAACCTAAAAAGCCAAAGGGAAGACATTGAGTTGCTCAACCTTAAATCCCATACAAACTATACATACTGTGTGGCCTCCATACGCAATTCTCTAAGATATAACCATACATGCTTGACTATCTCCACTGTTACAAGGACGATGAAAGAGCATGTTCCAAATGAGTCAACAGCGACTCACTATATCATGACCATATTGGGTTGCTTCTTTGGAATGGTCATTATATTGGGCGTGGTGTATCATTGCCTGAGAAAACGTAAGCAAGAAGATGAATCAAAGAGCAAGAAGCTTgagaagatgaaaaggaatttgaTAGAGATGAAATATGGGGCTGAACTGGAAGGTGGGACTATCTCTCAGCTATCACAGAAGCAAATGATGTCCACTGTCGAGCCCATTCAGAGGATGCCGTATTTACCAGCTGCGAGTGAGAAAGACCCATATAAGGTACAGGAACTGTCCGGAACACCCAAAACAACAAAAGGGAATTATATAGAAGTAAGGTCAGACCAGTCAGATCGCATTGAATGCAGCATTCCACCATCTGAGAACAGCCAAGGATCTGTAGCAGAAATATCCACAATAGCCAAGGAAGTGGATAAAGTGAATCAGATTATCAACAATTGCATCGATGCACTTAAATCTGAATCAGCATCCTTCCAGGCCGTAAAATCTGGAGCCGTTTCAACTGCTGAGCCTCAGTTGGTTCTTATATCTGAGCACCCACCAGGCAAGTCCGGTCTTCTATCACCAGTGTATAAAGGAGGTTACCACCACCCGCTACAGAGGCATCATAGTATGGAAGCACCACTTAAGCGTGCCAGCACATCATCAAGTGGGTCTTTGCGCAGCCCTAGATCTTTCCGTTCGGATGGTGCCTATCGATCAGAGTCCAAGTACATTGAGAAAACTTCTCTGGATGAGTCCGGGATCCTGACAGTCGCCCCAACTTCTGCGATGCTGAAGTCAGAGGCAGAGAGAATGCGACACTACACGGAGCACCGGCACTCGTACCCCGGCCCGCACCACATGGAGGAGCAATTGGAGGTTTCTGCAAGCCGGAAGTCATCCATCTTGGAGCCGCTAACACGTTCTCGGCCGCATGACCTGTCTTATTCACAGCTTTCGCCACAGTACCACAACCTCAGTGGTTACTCCAGCCCAGAGTACACCTGCCGGCCATCGCTTAGTCTATGGGAACGGTTCAAACTCCACCGCAAACGCCACAGGGATGAAGAGGAGTACATGGCTGCTGGTCACGCATTACGGCGAAAAGTACAGTTTGCTAAAGATGAGGACCTCCATGACATCCTCGACTACTGGAAGGGTGTGTCTGCCCAGCAGAAATTATgattgcttattttattttagtgtttatttaaaaagtggCTAAATAAACCACACTTCACTCTCTGGACCAAATAAAGCCAGTCTTcattaaagctgcagtaagTAACTTCCTGTGAGTTAGGGATTTGGATTTAGCCATCGCTGGTAGAAAAATGTCACTTCAAGCAACTCTCATTTAAACAATATTCAAGTGCTCAGTCGAATTGGCTAACTGGATAATTAGCGAAGAAGATGATATCAAGTTAACATGGTAGAATTGCAATATGAACAAGAATactagccagctagttagctaggtttgcaaaaagaaaacaccATTAGTGAACTAGCCAACTGGGTAATATGGGTGAAATTATGGAGCTCTCTTGACCTTTAAAAAGCCAAGCGAATATTCATCCTTGTTTTGGAAATTCTAGCTAATATTACCTGGTTGCGATGTGTGTTTTAGCGAGCTAGCTGCACTACTTTTGCTATTACTGGCTATTTGATTGAGGCTAGCATAATCTTTGTATTTTATCATCTTTTAATACCCAAAATCTCTGATATGGAATTTTAGCAGAGAATGAGTTGCAGCAGTGCAAGAACACCAagttttagtgtgttttttttctgtactgactctctaatacaaaacaaaaagttacatactgcagctttaaatagAAACTCACTCATTTTTTGGAGTTAGAGTAGCTTAGATATAATGAAATCACTAGCTATTTTTGCTATTTGacaataaaacatgacacattAGATCTTACGGGGAGGTATAAAAAGTAATAGATGACTTTTAACAGTATTAACctcaaattaaatcatttttatatatcagTAATTATAAAAGTAATTATAGGGTATTATATATTGTCTAATTCTtattactatcattattattatcgcAATCATCATCGTCACTGTCATCtcatcattactattattattattaaggttATTCTTACTGATTACTATAATTAATCTTTGGTTATCGCATGGCCGTGTCCTGTGACAGTATATTGACTGTTGTGCACTCGGAACAAAGAACTTAATCAAAATGTCTGCCGAATACTGTTTCACGTAAGAGTTCCAAGAaaaacgaaaaacaaaaacaaaactgtgctACTTTTTTTTCCAACGGTTCAAAAGGACTGCTACAGAGTTCTCCATCTTTTCAAGGGAATCTgtatcgaaaaaaaaaaaagttagacaTTTGCCACAGAAGCACACGTGTTGGCTtttacaacaaaacaacaactttaaaaagaaaacacagcttCTGTTCACGCTCTTTTTGTAAAGTTTGTGTTCAAATCTGCAATGAATGTCTTGAGTCCTTAAGGATTGCACTGTTCAACtgcacaaaaatacagaaacacacacacacacacacactcactcacacactccaatgtctttcccatgtcagaatacacaatacagaaacacacacacacacacacacacacagagagaacacacaTAGAAGAATGTATGTAGAATGACTTCTAGCATTTTCTAACTTCGTCTCAGTACCACGTctatttttatgtaatgttttatcCGTCTTTGACTAATCACAGccataaattctttttttaaagcccTGATTATCTTCTCCGAGTAGCGACGACGCCAACGTGCCAGTTCTGTGCCAATGCGCTGAACAGCTACGACCTTCAGATCAAGTTCATGTAAAatccccttacagaaaaatcacctCTGTTTCACGTGCGTGAAAGTGCATTGAAACGCACTGAAATCTCGTAAACacgtgacaaaaaaaaatgaccatgaaccatgtttttaaaaatcccatctgaaaataaatgactcatGCAAATACAGTCATGTGGGGAAATGAATCaggtgaaaatgaatgaatcatttaaaaaaataatgtggaaaaaattgaa

Function

symbol description
elfn1b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in brain and neurons. Used to study schizophrenia. Orthologous to human ELFN1 (extracellular leucine rich repeat and fibronectin type III domain containing 1).

NR:

description
PREDICTED: protein ELFN1-like

GO:

id name namespace
GO:0005515 protein binding molecular_function

KEGG:

id description
K17567 ELFN1; protein phosphatase 1 regulatory subunit 28

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929006.2 True 4843 mRNA 0.42 2 352453 408289

Neighbor

gene id symbol gene type direction distance location
rgs11 rgs11 coding downstream 74770 262153 ~ 277683 (-)
percc1 LOC108258685 coding downstream 108279 234899 ~ 244174 (-)
pdia2 LOC108258683 coding downstream 117477 228448 ~ 234976 (-)
rnf175 rnf175,LOC107665971,LOC107692639,LOC107714147 coding downstream 190472 154481 ~ 161981 (-)
fgb fgb,LOC107758871 coding downstream 222092 125530 ~ 130361 (-)
uncx4.1 LOC108258667 coding upstream 110315 518604 ~ 525065 (-)
chtf18 chtf18,LOC107725360 coding upstream 135969 544258 ~ 558212 (-)
plk1 plk1,LOC107722962,LOC107702528 coding upstream 174209 582498 ~ 589396 (-)
LOC113535779 cacng3,LOC108258515,LOC108439097 coding upstream 237187 645476 ~ 651428 (-)
tlr2 tlr2 coding upstream 294910 703199 ~ 711315 (-)
G368725 NA non-coding downstream 70550 281439 ~ 281903 (-)
G368713 NA non-coding downstream 107673 244177 ~ 244780 (-)
G368689 NA non-coding downstream 158539 185834 ~ 193914 (-)
G368685 NA non-coding downstream 167807 179182 ~ 184646 (-)
G368903 NA non-coding upstream 170304 578593 ~ 581860 (-)
G368912 NA non-coding upstream 263351 671640 ~ 673030 (-)
G368944 NA non-coding upstream 292795 701084 ~ 701288 (-)
G369130 NA non-coding upstream 463300 871589 ~ 875203 (-)
LOC117596193 NA non-coding upstream 858417 1266706 ~ 1270425 (-)
pmm2 pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664 other downstream 62545 284863 ~ 289908 (-)
si:dkeyp-75b4.8 NA other downstream 125351 202654 ~ 227102 (-)
rasd3 LOC108258668 other upstream 182847 591136 ~ 592595 (-)
prkcba prkcb other upstream 245164 653453 ~ 702345 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other upstream 461470 869759 ~ 948803 (-)
G369125 actb other upstream 503264 911553 ~ 915683 (-)
G369242 LOC108258881 other upstream 867732 1276021 ~ 1276813 (-)

Expression


Co-expression Network