pnpla4 (pnpla4)


Basic Information

Item Value
gene id pnpla4
gene name pnpla4
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12744261 ~ 12751839 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931696.2
tttattttgaaaactgTTCATACCCGGAAGTAAAGCGGAAACGCGATTTATGCATGTTTTCAGCTTGAAATGCAGTCAGGTCGCTGTGCTGCTGAATGATGGGATGCAGTGATGGCGGTGGTCAACCTGTCCTTTGCTGCTTGCGGCTTTCTGGGTATCTATCAGCTTGGCGCAGTCGATGCTCTCCTCACACATGGACACAGGCTGCTGTCGTGTTTGAGAGCCTGCGCTGGGGCATCAGCTGGAGCTCTGGTGGCTGCTGTCCTCACCACCGCTCCTGACAAGCTGGAGCATTGTAAAGAATTTACCTACAGATTTGCCAGCAATGTCAGAAAACAGAAGCTTGGTGCGATCACGCCTGGATACGACTTCATGCTTGAGCTGAGAGGCGGCATCGACCACATCCTGCCTCCCGACGCTCACCTGTTGGCCAGCGAGCGGCTCCACGTCTCTCTGACCAACTGCAGGACGGGGAGGAACAGCATGGTGTCCAGCTTCCCCTCCAGAGAGCGGCTCATTAAGGTTCTTCTGGCCAGCAGCTTTGTTCCGCTGTATGCAGGAGTGAAGCCAGTGGAATTCCAGGGCCAGaaatggatggatgggggtTTCACAGACAGTCTTCCCATCCTGCCTGTGGGACGGACCATCACCGTGTCTCCGTTCAGCGGCCTGCAGGACGTGTGCCCACCTCACAGGGGTCACAGGAAGCTGAACCTTAGACTGGCTAACATGACCGTTACACTTTCCACTGAAAACATCAAACGACTGAACCAGGCCTTGTTCCCGCCATCCCTGCTCCGAATGCAAGGGTTACATCAAGAAGGCTACGAGGATGCGCTGCGCTTTCTCAGGACTGAGGGCTGGACACAGGCGTAAAAACAAgggctttattttaaaagatttatttaaccTTGAATGTCTGTGTACAACAATAAATCGACTTTTTCAGGCAAGTTTTATACAATGTTTGTTGGGGTGTATAGGGTCATTTTTAATTCTAACATCTTGATTGaagtaatatatgtatattttatataacatattaGTTTATTCTTTGAATAAGTTGCTGCTGGAAATTGTCTGTTTTGACAA
>XM_026931697.2
GTCATATGGGAATAAATAAGTGACTTTACAAATTGAAGACAACTTCAAGATAAATAAGGATGCAGTGATGGCGGTGGTCAACCTGTCCTTTGCTGCTTGCGGCTTTCTGGGTATCTATCAGCTTGGCGCAGTCGATGCTCTCCTCACACATGGACACAGGCTGCTGTCGTGTTTGAGAGCCTGCGCTGGGGCATCAGCTGGAGCTCTGGTGGCTGCTGTCCTCACCACCGCTCCTGACAAGCTGGAGCATTGTAAAGAATTTACCTACAGATTTGCCAGCAATGTCAGAAAACAGAAGCTTGGTGCGATCACGCCTGGATACGACTTCATGCTTGAGCTGAGAGGCGGCATCGACCACATCCTGCCTCCCGACGCTCACCTGTTGGCCAGCGAGCGGCTCCACGTCTCTCTGACCAACTGCAGGACGGGGAGGAACAGCATGGTGTCCAGCTTCCCCTCCAGAGAGCGGCTCATTAAGGTTCTTCTGGCCAGCAGCTTTGTTCCGCTGTATGCAGGAGTGAAGCCAGTGGAATTCCAGGGCCAGaaatggatggatgggggtTTCACAGACAGTCTTCCCATCCTGCCTGTGGGACGGACCATCACCGTGTCTCCGTTCAGCGGCCTGCAGGACGTGTGCCCACCTCACAGGGGTCACAGGAAGCTGAACCTTAGACTGGCTAACATGACCGTTACACTTTCCACTGAAAACATCAAACGACTGAACCAGGCCTTGTTCCCGCCATCCCTGCTCCGAATGCAAGGGTTACATCAAGAAGGCTACGAGGATGCGCTGCGCTTTCTCAGGACTGAGGGCTGGACACAGGCGTAAAAACAAgggctttattttaaaagatttatttaaccTTGAATGTCTGTGTACAACAATAAATCGACTTTTTCAGGCAAGTTTTATACAATGTTTGTTGGGGTGTATAGGGTCATTTTTAATTCTAACATCTTGATTGaagtaatatatgtatattttatataacatattaGTTTATTCTTTGAATAAGTTGCTGCTGGAAATTGTCTGTTTTGACAA

Function

symbol description
pnpla4 Predicted to enable triglyceride lipase activity. Predicted to be involved in lipid homeostasis and triglyceride catabolic process. Predicted to act upstream of or within lipid catabolic process. Predicted to be active in cytoplasm; lipid droplet; and membrane. Orthologous to human PNPLA4 (patatin like phospholipase domain containing 4).

NR:

description
PREDICTED: patatin-like phospholipase domain-containing protein 4

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0004806 triglyceride lipase activity molecular_function

KEGG:

id description
K11157 PNPLA4; patatin-like phospholipase domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931696.2 True 1092 mRNA 0.49 7 12744261 12751839
XM_026931697.2 False 1048 mRNA 0.49 7 12744261 12751734

Neighbor

gene id symbol gene type direction distance location
LOC113537226 NA coding downstream 84768 12643939 ~ 12659493 (-)
slc2a15b LOC108258984,LOC108435958,LOC107708658,LOC107704318,LOC107602731,LOC107699075 coding downstream 121911 12609053 ~ 12622350 (-)
fgf8b fgf8,fgf8b,LOC108258517,LOC107699081,LOC107568785,LOC107602739,LOC107738466,LOC107704317 coding downstream 151813 12585726 ~ 12592448 (-)
poll poll coding downstream 165868 12571039 ~ 12578393 (-)
wbp1lb LOC108259041 coding downstream 173963 12563004 ~ 12570298 (-)
cd99 NA coding upstream 569424 13321263 ~ 13348834 (-)
trnar-ucu_15 NA coding upstream 572243 13324082 ~ 13324173 (-)
trnar-ucu_16 NA coding upstream 573678 13325517 ~ 13325608 (-)
trnar-ucu_17 NA coding upstream 574154 13325993 ~ 13326084 (-)
trnar-ucu_18 NA coding upstream 576213 13328052 ~ 13328143 (-)
G375121 NA non-coding downstream 1741 12742320 ~ 12742520 (-)
G375119 NA non-coding downstream 2609 12741425 ~ 12741652 (-)
G375097 NA non-coding downstream 47043 12696015 ~ 12697218 (-)
G375028 NA non-coding downstream 158664 12585160 ~ 12585597 (-)
G375027 NA non-coding downstream 159602 12584445 ~ 12584659 (-)
G375141 NA non-coding upstream 81037 12832876 ~ 12833354 (-)
G375329 NA non-coding upstream 516043 13267882 ~ 13271621 (-)
LOC113537738 NA non-coding upstream 634993 13386832 ~ 13401425 (-)
G375420 NA non-coding upstream 664983 13416822 ~ 13417096 (-)
G375455 NA non-coding upstream 746804 13498643 ~ 13505565 (-)
LOC113537246 NA other downstream 113858 12625051 ~ 12630403 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 660212 12078891 ~ 12084049 (-)
lipt1 lipt1 other downstream 1871705 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 2308894 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 2825482 9878843 ~ 9918779 (-)
gyg2 gyg2 other upstream 555874 13307713 ~ 13320530 (-)
G375428 NA other upstream 687380 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 1220497 13972336 ~ 13980251 (-)
pibf1 pibf1 other upstream 1230906 13982745 ~ 14016151 (-)
G375826 NA other upstream 1275455 14027294 ~ 14030879 (-)

Expression


Co-expression Network