cbr1 (cbr1,LOC108428204,LOC107746284)


Basic Information

Item Value
gene id cbr1
gene name cbr1,LOC108428204,LOC107746284
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10120542 ~ 10123973 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931753.2
CGGACTTCCTGTATGACGCAGTGAGCGCTGACGCGGTGCGGGATTCGTGTTCTTCCGGTTCTGCGCGGTGAGCTGCCTGTTGCGAGTGTGTCAGCTTTACGTTAATACGCGTCCTGAAGGCACGATGTCAGCGCGGAAAGTTGCGCTCGTGACAGGCTCGAACAAGGGCATCGGGCTGGCGGTGGTGCGCGCGCTGTGTAAGCAGTACGACGGAGACGTGTACCTGACGGCGCGGGACGTGGCGCGCGGGACGGCGGCCGTGGAGGGTCTGAAGGCAGAAGGACTGGCGCCGCTTTTCCGCCAGCTGGACATCACGGACCTGGGCAGCGTGCGCGCGGCGCGTGACTTCTTCAAAGCGGAGTACGGCGGCGTGGACGTGCTGATCAACAACGCGGGGATCGCCttcaaaaTGGCTGATAAAACACCGTTTGGAATCCAGGCTGAAGTGACACTCAAGACTAATTTCTTTGCCACCAGAGATTTGTGCAATGAGTTCCTCCCTATCATCAAGCCAGGAGGAAGGGTGGTGAATGTTTCCAGCATAATGGGTTCCATCGCTCTGAGCCGCTGCAGCCCGGACCTCCAGGCTCGTTTCCGCAGCAATGACATCACCGAGGAGGAGCTGGTGGGGCTAATGGAGAGCTTCGTGAAGGATGCTCAGGAGGGTACTCACACACAAAGAGGCTGGCCTGAGACCGCGTATGGCATTTCCAAGACCGGCCTGACCACTCTGACCAGGATCCACGCCTGGAGACTGACGCAGGAGAGGGCTGGAGACGAGATCCTGTGCAATGCCTGCTGTCCAGGCTGGGTCAGGACCGACATGGCAGGGCCAAATGCCACAAAGTCTCCAGACGAGGGCGCCATCACTCCAGTCTATCTGGCTCTGCTGCCACCTGGGTCCAAAGAACCCCATGGACAGTTAGTGTCAGAAAAGAAGGTGCAGCCAtggtgagcatgtgtgtgtttgcttgataatattgttattataatattgGTTATAAAAGTGTGCAATaatatgcattatatattttGCTATGTCTCTAGTATATCTATATTGCAGCTTGAAAGTGCTTTAGCTGCTGACTATAAATGACACCATATGAGAGGTAGTTTCCTCATTCTCCTGCATTACTGATACTTTATCATTAGAACACTCTTTGGTATCTGTGCTGAATAAAATCAGATAATAAAATCTGTGTCAGTCTGAATAGTTCACACAACCAGACCAGTCAGATAAGATGATTGATGTGATTTATTGATTCAAAGACAAATTAACATACAACAATGTCATGATCATTACATTTGTGCCTTATTCTGCTTATAGTTAATATGTTTAGAATTAaaccatttatcatttatcaccATCACTAATGTTAAGGATTTATATTTATGGGCTGTGGACTGTAAGctaaaataaagattttcacATTCA

Function

symbol description
cbr1 Orthologous to several human genes including CBR1 (carbonyl reductase 1).

NR:

description
carbonyl reductase [NADPH] 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00079 CBR1; carbonyl reductase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931753.2 True 1435 mRNA 0.50 4 10120542 10123973

Neighbor

gene id symbol gene type direction distance location
morc3b LOC108258289 coding downstream 3570 10104532 ~ 10116972 (-)
bcl9 bcl9,LOC107676875,LOC107746285 coding downstream 77287 9993701 ~ 10043255 (-)
gja8b gja8,cx44.1,LOC108258942,LOC107566539 coding downstream 150383 9968451 ~ 9970159 (-)
fstl1a LOC108258944,LOC108428196,LOC103028151,LOC106575075,LOC105019681 coding downstream 159172 9939296 ~ 9961370 (-)
lrrc58a LOC108258943,LOC108428195,LOC107566531 coding downstream 183369 9931449 ~ 9937173 (-)
cryzl1 cryzl1 coding upstream 9239 10133212 ~ 10141577 (-)
LOC113537761 LOC108258610 coding upstream 93635 10217608 ~ 10236158 (-)
LOC113537273 kcnrg coding upstream 231253 10355226 ~ 10359434 (-)
arl11 arl11 coding upstream 273928 10397901 ~ 10399251 (-)
mcf2la mcf2l coding upstream 315975 10439948 ~ 10526876 (-)
G373649 NA non-coding downstream 35805 10084439 ~ 10084737 (-)
G373629 NA non-coding downstream 95657 10022537 ~ 10024885 (-)
G373398 NA non-coding downstream 155999 9962422 ~ 9964543 (-)
G373327 NA non-coding downstream 288217 9831607 ~ 9832325 (-)
G373317 NA non-coding downstream 294849 9825461 ~ 9825693 (-)
G373656 setd4 non-coding upstream 2852 10126825 ~ 10127889 (-)
G373657 setd4 non-coding upstream 4836 10128809 ~ 10129630 (-)
G373658 NA non-coding upstream 5859 10129832 ~ 10130057 (-)
G373678 NA non-coding upstream 68023 10191996 ~ 10246820 (-)
G373714 NA non-coding upstream 131030 10255003 ~ 10268661 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 201763 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 1509701 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 1688104 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 1791516 8320868 ~ 8329026 (-)
LOC113537489 NA other downstream 1853270 8261435 ~ 8267272 (-)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 298179 10422152 ~ 10435367 (-)
lipt1 lipt1 other upstream 747251 10871224 ~ 10872556 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 1954918 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 2501078 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 3183740 13307713 ~ 13320530 (-)

Expression


Co-expression Network