eif5b (eif5b,LOC102778822)


Basic Information

Item Value
gene id eif5b
gene name eif5b,LOC102778822
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10850376 ~ 10870096 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931840.2
CCCTTCAATGGGCGCATGCGCAGTGCTGCTCCAATCGACCATATGCGCTAAGCAGTGACTACACACAGCGGTGCTAAAGTGGGGAAATAATTACAGAGTAATCAtgggaaagaaacagaaaaataaaggaGATGACGGTGCCAAAGACGACGGTGTTGACATTGATGCCTTAGCAGCTGAGATCGAGGGAGCCGGCGCAGCAAAGGAACAGAGCAAAGGCAAaggcaagaaaaagaaaggagggaAGAAAGATGACTTTGATGAGGATGACATCCTGAAAGAACTGGAGGAATTATCACTTGAAGCCCAGGGTGGAAAAGCAAAAGAACCAGCAAAGAAATCCGACTCCATAGAGGACACCGAGGCCGAGCCAGCACCAACCAAGGCGGACAAGAAGAAGGCCAAGAAGGGCAAGCGTGAAGACGATGAGGGTGAAGAAGCTCCGGGTAAAGACGACATGGAGAACGAGAGCAGGACGAAAGGCAAAAAGGCACTTGCGGCTCCCGTTGCTGCTTCTGCTGCTTCAGAGTCTGACGACGAGTCGCAATCCCGACGCAAAGCCAAGGCCGTCAAGAAGGGCGGGCGGAAGGGCGTGTCTGACTCTGAGGATGACGACGAGGAAGAACGTGCAAAGAAGGGCGGAGGAGGTGAAGAAGAGCAGTCAGATGACGACTCTCAGGCCGCACGCaaacagaagaagaaggcaAAAGCGAAAGCAAAGGCCGACAGTGACAACGACGATCCAGAAGACGACAGCTCCTTCAAGATGAAGACGGCGGCACAGAAGAAGGcagagaagaaggagagagaaagaaagaagaaggaggaagagagggccaaaatgaaagcaaaaaaggagaaggaggaagagaccGTTAAGAAGGATGCAGCCAAGCCTGCAGGAAAAGGTGCAGCCGCTCCACCCTCAGATGCAAAAAAGACTGAGGTGGAGGAGCTAGACGGGGCGGAAGACCAGGGCGAAGATGAGGGCGAgggtgagaagaagaagaaggacaagaagaagaagaaaggagaaaaggaagaaaaggagaagaagaaagggcCGAGTAAAGCTGCAGTGAAGGCCATGCAGGAAGCCCTGGCTCGgttgaaggaggaggaggagcgagccaagagggaggaagaggagagggagagacgcCTGGCCGAGCTGGAGGCGCAGAGGCTCGAGCAGGAGCGACTGGAagcagagaggaaagagaagaagaagcagaaggaCAAGGAAAGGAAGGAGAGGCTGAAGAAGGAGGGCAAGCTCCTGACCAAGTCCCAGAAAGAGGCTCGAGCCAGAGCTGAGGCCACGCTCCGCGCGCTGCAGGCCCAGGGTGTTGAAGTGCCATCCAAAGACTCTATGCCAAAGAAGAAGCCTGTTTActctgacaaaagaaaaaagaagccaACAGCACACACTCCTGAAGAGACCTCAGAAGTAGCTTCACCCACGTCGGAAGTGGCTGAGCCGATCGCCATGGCGATGGACGTGGACGCTTCCAAAGAGGAGCCAGAGGCTGAAACTAAGGCTGACAGTGCAGACCTAGATGACTGGGAGGCCATGGCCAGTGATGAAGAAAGAGAGTTGAAGAAAGTGCACATCGAAGTGAAGGAGACAGCAGCCACTCAGCCAACCCACAAACCTTCTGCTCCTGCCGAACAGGAGAACGGTagtgaagaagaggaggaggacgacgaggatgatgaagaggaggatgaagaggacgAGAGcgaggaagatgaggaagaggaagagaaggacaGCCAGACAGCAAAGGACAAGAGTGGGAAAGAAGAGAGCTCGGAGTCGAGCAGCGAGAGCGATTCAGATGACGAGCGCACCAAAGAGGAGAGGATGTACGATAAGGCCAAGAGACGCATAGAGAAACGGAGACAGGAGAACCTAAAGAACATTAACGTGGACAAACTGAGAGCTCCTGTGGTCTGTGTCTTGGGGCATGTAGATACAGGGAAGACAAAAATCCTTGAcaagCTgcgacacacacacgtacaggaTGGCGAGGCAGGTGGAATCACTCAACAGATTGGCGCCACCAACGTTCCCTTGGAAACCATCATTGAGCAAACCAAGATGGTGAAAAATtttgACAGAGATAATATAAAAGTTCCAGGAATGCTGATTATCGACACACCAGGACACGAGTCTTTCAGTAATCTGAGAAACAGAGGCAGCTCCCTGTGTGACATCGCGATCCTGGTGGTGGACATAATGCATGGACTGGAACCACAAACCCTCGAGTCCATCAACCTGCTGAAGGAAAAGAAGTGTCCCTTTATTGTGGCTCTGAACAAGaTCGACCGTCTCTATGACTGGAAGAAGAGTCCGGACACAGATGTGGTGGCTACtctgaagaagcagaagaagaacaCTAAGGATGAGTTTGATGAGCGAGCCAAAGCTGTCATGCTCGAGTTCGCCCAGCAGgGTTTGAATGCAGCTCTGTTCTTTGAGAATAAGGACCCTCGTACTTTTGTCTCTCTGGTGCCCACCTCTGCGCATTCAGGCGATGGCATGGGCAACCTGATCGCCCTGCTGGTAGAGCTCACCCAGACCATGCTGGCACGCAGGCTGGCCCACTGCGACGAGCTCCGAGCACAGGTCATGGAGGTAAAAGCTCTGCCTGGTATGGGCACAACGATAGACGTGATCCTGATCAACGGGTGCTTGCGTGAGGGCGAGACCATCATCGTGCCGGGCGTGGAGGGGCCTATCGTCACTCAGATCAGAGGACTGCTGTTGCCACCGCCTCTCAAGGAGCTCCGTGTCAAGAATCAGTATGAGAAGCACAAGGAGGTGAATACGTCTCAGGGAGTGAAGATCCTGGGGAAGGATCTGGAGAAGGCTCTGGCAGGCCTGCCGCTGCTTGTGGCTCATAAAGAGGATGAGGTTCCTGTACTTAAGgACGAGCTGATCAGGGAGCTGAAGCAGACGCTGAACGCAATAAAGCTGGAGGAGAAGGGTGTGTATGTACAGGCATCGACACTGGGCTCACTAGAAGCTCTGCTCGAATTTTTGCGCACATCCAAAGTGCCTtatGCTGGCATTAATATCGGTCCTGTTCACAAGAAAGACGTAATGAAGGCATCTACAATGCTGGAGCATGACCCACAGTACGCAGTGATACTGGCGTTTGATGTGAAGATTGAAAGAGACTCTCAGGAGATGGCTGACAGTCTGGGTGTGCGGATCTTTAGTGCCGAGATCATTTACCATCTGTTTGACGCCTTCACCAAATACAGGGAAGACTACAAGAAACAGAAGCAGGAGGAGTACAAGCACATAGCAGTGTTCCCCTGTAAGCTGCGCATCCTGCCTCAGTTCATCTTTAACTCCAGAGACCCTATAGTCATGGGGGTGACTGTGGAGGCAGGTGTACTGAAGACAGGCACCCCGTTGTGTGTACCTAGCAaagctTTCGTGGAGATTGGCATCGTGACCAGTATCGAGGTGAACCACAAGCCAGTAGAGACTGCAAAGAAAGGGCAGGAGATCTGCGTGAAGATCGAGCCGATTCCCGGAGAATCGCCCAAGATGTACGGTCGACATTTCGAGGCCGTAGATATCATCGTTAGCAAGATTACCCGTCAGTCCATCGACGCTCTGAAGAACTGGTTCAGAGACGAGATGCAGAAGTCGGACTGGCAGCTAATCATGGAGCTGAAGAAAACTTTTGAAATCATCTGAGCACACACAATGACTTTCAAACTGACCTACATGctgagaccacacacacacacacacacacacacacacacttttgcacaCTCCCGAGTTCATCTGACTACTTCAGTCTAAGTGTtgctgtttttacacacacacacacacacacacacacacacacacattctctctgaCACACTCTGACACGCAGAGGGTAAGTGTGGGTGTGTACAGGGTCGAAACATGCTCCTCCCTGTtttccctccatctcctcctttATGAGTGGTGGAGACAacagaaaaagatgaaaagagaggaaaaaaaaaagtttttctgtgAGAAACTGAAACTATTACCACTGTTTTTAACAGTGACTGTTAgagaaacatttacacactattCCAAACGTGCCTGTTATTTCTGATCGACCTGTTTAGTTTCCCTGGAGCGTGGCGCTGATTTTACAGAAGCATTAGAGGAATAGGGCACCCAAAAATGCTAACGTGGTTAATGACCTATGAAAGCGAACGAGAAGCCGTTAGTACAGCTGTTATTGAATGCTAACAGGCTCCTGCTGGCTTTTGTGAATTAATAGCAATGTTAACATGTTTGGGTTAAGGTGTAGTGCCAGTTTTGCAGGCTCAGTTTCTGCCAGTCTTTGTGTGAACCTTAGTGTCAGTGGTGATGACGCTCCATCAAATCACACACGATACATGTGTTCATTACACCATATAGTGTCAGAGAGGGGAAATGAAGGCAAGTGGGGATTTCACTTGTCAGACTTGAAATTGAAAACATTAAACAAGGATTTTAGACATTGAGTAATTATGCCTggtcagtgttttctttttttttttttttttttttttaaataaagttcccCTCATGGCCCTGCAATGCAAGTCTTTTATGCTCCTTTGTGAACTAAACCCACGTTATGCGGTATTTGTCGCAAGGCCTTTGCTACTACCCTTGATGCTGCCTTGTGCCTGTCTTTACTGGGATTTGTTCAAGTTAGTATAAATTCCCCCCGAATGAAAGGAAAAATCATTGGTGATTTAATTACCAATAAAGAGATGGCATATTTATAGGAGTTGTATGTGAAACATGATGTGAGTTTGTCTAGATGTTTCTCATTGTGTTTATCTTCACCTGTTGAAGGGAAAAGCTTTCTGAAACACTGCATAATTTCCAAGGTGGAGAGCATGGGTTTGAAATGGTATACTGGACCAGtgcatactgtatactacacactgttccTCTCTATTAATGTCATTTATAGTATGCAGTATGAAAGATTTAAAGGaaacctccaccctgaaacatgtttatattgaaataactgtgatgtgcttagtgattctgcAGCTAAATTCTTGGTGGTGTATTTTCGTTTTTCTTGTGAGAAGTTACCAGTTTGTCTGCTGTGCTAATGTCAACAAATGAACAAGAGCTTCTTTCACCACTCACTATTCACCAGAGATGGATTACCCAgtggcactactgtcagtgGGCagttgaacagcattgtgggcAAAAAAAAGGGGCCAAgttcaaaatggcaaaatattcagcttttaatggtcttaaatTAAGTTTAATTGGTCAGACAATTGTCAAGAATGAAGCAAATGCACTCTGAGActtcctgtgccaccatttgctcgtttacctttgctgcagtgaactgtttgtttggggaaaagctagaaacagggaaattcattCAATTTATTTCATCTTcctgtatgcaaaggtaaaatcatgacaatgattaaaatgtttgatgtaaaattcaaactaatacATGTCTGGGTTTACAAAACATTCCAACCGTATCTTCtgggatgattttttttttttttgtcattatttggttatctgccacaccttatccatcaagggccacaaggcttaaacatttaaagaaatcaaaagaaaagCTCCCATAcgaagttcctttatctatttgtttaattcttgctaatttcctgaccagtgatttgttgttaagaccattaaaagcttaatgttttgtcattttgggcttggcccatttttttggcCAGGAGTGTAGGAAAATGTTAACCAAAGgggaaaatagaccaacatgttgatggaaaaaaaaaaaaaaaaagtttaaact

Function

symbol description
eif5b Predicted to enable translation initiation factor activity. Predicted to act upstream of or within translational initiation. Orthologous to human EIF5B (eukaryotic translation initiation factor 5B).

NR:

description
PREDICTED: eukaryotic translation initiation factor 5B isoform X2

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K03243 EIF5B; translation initiation factor 5B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931840.2 True 5840 mRNA 0.47 24 10850376 10870096

Neighbor

gene id symbol gene type direction distance location
arhgef7b arhgef7,arhgef7b,LOC107718510,LOC107567796,LOC107676887 coding downstream 11415 10806435 ~ 10838961 (-)
sox1b sox1,LOC107746263,LOC107567792,LOC105927502,LOC103140368,LOC107676867,LOC107692134,LOC107718482,LOC103479789 coding downstream 151685 10696458 ~ 10698691 (-)
tubgcp3 tubgcp3,LOC107692132,LOC107746265 coding downstream 288669 10529524 ~ 10561707 (-)
mcf2la mcf2l coding downstream 323500 10439948 ~ 10526876 (-)
arl11 arl11 coding downstream 451125 10397901 ~ 10399251 (-)
map2k7 map2k7,LOC107712243,LOC107692141 coding upstream 64049 10934145 ~ 10946702 (-)
pkn1a LOC108428230,LOC107603033,LOC107712223,LOC107676851,LOC107561874 coding upstream 78982 10949078 ~ 10995765 (-)
si:ch211-214c7.4 prr36,LOC108258951 coding upstream 131571 11001667 ~ 11019985 (-)
mcoln1a mcoln1,mcoln1a,LOC108428233,LOC107561871,LOC107676888,LOC107718592,LOC107603030 coding upstream 155197 11025293 ~ 11046065 (-)
trappc5 trappc5,LOC107712234,LOC107692146,LOC107676838 coding upstream 176663 11046759 ~ 11052112 (-)
LOC117596123 NA non-coding downstream 53179 10676632 ~ 10797197 (-)
G373762 NA non-coding downstream 285452 10495636 ~ 10564924 (-)
LOC113537663 NA non-coding downstream 557798 10290637 ~ 10292578 (-)
G373719 dleu7 non-coding downstream 561003 10288380 ~ 10289373 (-)
G373714 NA non-coding downstream 581715 10255003 ~ 10268661 (-)
G374040 NA non-coding upstream 58371 10928467 ~ 10929554 (-)
G374039 NA non-coding upstream 59643 10929739 ~ 10933407 (-)
G374091 sept3 non-coding upstream 197635 11067731 ~ 11067952 (-)
G374093 atf7ip non-coding upstream 214546 11084642 ~ 11120831 (-)
G374105 NA non-coding upstream 269087 11139183 ~ 11139811 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 415009 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 931597 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2239535 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 2417938 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 2521350 8320868 ~ 8329026 (-)
lipt1 lipt1 other upstream 1128 10871224 ~ 10872556 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 1208795 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1754955 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 2437617 13307713 ~ 13320530 (-)
G375428 NA other upstream 2569123 13439219 ~ 13439535 (-)

Expression


Co-expression Network