rab9a (rab9a,LOC108434684,LOC105902834,LOC107654259,LOC107667663)


Basic Information

Item Value
gene id rab9a
gene name rab9a,LOC108434684,LOC105902834,LOC107654259,LOC107667663
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8212903 ~ 8218195 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931962.2
TTAGAAGTCCCCCAGTAAAGAAGAAGTGTGCCTTCAGAGGTGCCCTGCTCTGGGTGTCTGTCTGGTCATATGAACATGAGGGAAGAAGCCCGGGGCGCCATGACGCGCAAAAATCCCTACAAGACCGGAGGAATGGCGCCGCATACACAGCTCTTCAATAAACGTCGCTAAACTATAAAGGTTTCACATTTATCTCCTCACCATGGCAGCCAAGTCGTCTCTATTAAAGGTGATCCTGCTCGGGGACGGTGGCGTGGGAAAGTCATCCCTCATGAACCGCTACGTGTCGGACAAGTTTGACGCACACCTCTTCCACACCATCGGCGTCGAATTCCTCAACAAAGAGCTGGAGGTGGACGGGCGGCGGGTGACCCTGCAGATTTGGGACACTGCCGGTCAGGAGCGCTTCCGCAGCCTGCGGACGCCATTCTACCGCGGCTCTGACTGCTGCCTTCTCACGTTCGGTGTGGACGACGCACAAAGCTTCCTCAACCTCAGCCACTGGAGGAAGGAGTTTGCCTACTACGCTGATGTAAAAGAGCCCGACAGCTTTCCTTTCATCATTCTTGGCAATAAAGTCGATGTGGCGGAGCGGCAGGTTTCCATCGAAGAGGCGCAGAGGTGGTGTTATGAGAACGGCGGCCACCCGTATTTCGAAACTAGTGCCAAGGACGCAACAAACGTCGCTGAGGCTTTTGAAGAGGCTGCAAGACGTGTGTTGGCACTGGAGGATCGTCAAACACACATCATGCCCTCAGACGTTGTGGATTTACGCAGGAAGCCACGCTCTGGCAGTCGCTGTTGTTTGTAACAGCTGGATGTTATGGCGAAGTCAGTCCATGGACTATTTAAAGCTGCCTAATGGACTTTTTATGGACTTACTGGAGCTGTGCAGAAGCTCTATTAGTCTATCAAGGTTTTTAGTCATCCAGGACATACTGAGTGTCTAGTAGTCATAAGTCAAAGCAACTGGACTTTAgttataatcattaaaaatatcgGACCACATGTTGGTTCTGGTCTGTGAAATGTGAATCATTGAGTTAAATTCTGTTGAAGGCTTTTGCATGAGTGTCGAAACATGTTCAACATTATTACACAAATGGCTTTGACTCACTGTTATTACACATTCAGAATGACCCAGACTGGCAAAAGGCTTCACAGACTATTGAAGCTTCTGCATAGCAGGTGGCGCTAGTGTGCAAGAATCTGTAGCTCCAAACCATTAAGTCCTGCAGTTTTTGCATTAGAGGCTTTTTCAGGCCAGTGAAAAGTTGAGCACTCATGGGGAATAGAGTTTAATGTACACCATATCAGTCAAAGTTTTGAGTACACTGAATTGAAACTAAGTTTTGAAACTATTAAATGTGTCCATAACCACTTACTATCTCATTAtgttatgtgtttttatttaatcgGTTACTTACACATGATTCGcatttgaaaattttaaatgactttGTAAATGTCGTAAGTAAATGCATTGAGATGGGTTTTTATGTTTAAGTACATGTTGATTAATAGTCTTGGGAAAACACACTGGCCAAGTGGATGGCCATTTTAGAATGATCCATGAATTTGAGGATGTTTTCAGGTTTGAGAAATATGATATAGACATGTTCATGGGGGAAAAGGTTTCCAGGAAGTGTACTAAAAACATTTTGACTGAACATATAATTTGAGTGCCATATTTTTTCTCCACAGTGCCTTTTCTCTTCTGATGGACAAATATTCAGGTGGGCAGCTTTAAGAGACACTTGAAAGAACACTAGTGGAAAATGAAACACTCCTGTGTGCTGATTTTAGCATTATCCACCTAGCGTGGTTACATTACCCAAATAAACACTCTGACAACTCTAACACATGacaacacaataataactgccCAACTGCAGTCAAGTGTCAGACCTACACTTAAGAACTTATAATGTGTACGTGCAGGACTTTTCTTCCACTCGGGTTGATCAGGATGTAGCTCTTACATTGTATCGCATAAACCCACGAGAAGCATTTTGATGAACGTGAAAAAATCCTGCTTTAGCaccttttgtatgtttttttttccccccaaactcTCAGTCCTTTATGCATACATCTGTGCTGTTTTATAATAAAAGGGCAACAATTTCATTTTAACTACATATTAGGAAAGCCTTACCTATTTACATCTAGAATGTTACACTGTTTTTACTATTACGATCTTACTAAGTAAGTATGTTGGTCCTAATGAAACAGTAATCACTTTTAATTTAACAGGTGGATGTTGCCATTTTAGAGCttaatttattacagatttggtgtgatttgtttttctcttagCTGCACAACTGagacattttgtacatttttctgaattaatatctgatgtgttttctctgtaatCTGTTTCTAGTCTTTGTCAGTTTGTTGCTAATAAATAAGGGGCTGGAAAATGTATACTTCCACAAACAAGCTATTCATAAATGCACACTCATCTCCTACAAGTCATTTGTACAGTCATCAGCTTAACCTTCAAAAGCTCATTTCAAGTATTGAAGCCCAAATTTGAACCCTAATGAGTGGTGGTCCTTTAATTGTTGTGCAAATCtaattaaaatataagtaaACTCTC

Function

symbol description
rab9a Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to act upstream of or within Rab protein signal transduction. Predicted to be located in phagocytic vesicle membrane. Predicted to be active in late endosome; lysosome; and phagocytic vesicle. Orthologous to human RAB9A (RAB9A, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-9A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07899 RAB9A, RAB9; Ras-related protein Rab-9A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931962.2 True 2611 mRNA 0.42 2 8212903 8218195

Neighbor

gene id symbol gene type direction distance location
u2af1 u2af1,LOC102219527,LOC105917412,LOC103389252,LOC101158751 coding downstream 55343 8150140 ~ 8157560 (-)
cbsa cbs,LOC107742639,LOC107654262,LOC107667662 coding downstream 64370 8132987 ~ 8148533 (-)
cryaa cryaa,LOC106939151 coding downstream 81720 8127561 ~ 8131183 (-)
ankrd10a ankrd10 coding downstream 107551 8091366 ~ 8105352 (-)
LOC113537306 ube2a,ube2al,LOC108259060,LOC103029486,LOC103021436,LOC107552373,LOC105934920,LOC107588833 coding downstream 122806 8087780 ~ 8090097 (-)
LOC113537479 tceanc coding upstream 444 8218639 ~ 8222543 (-)
zgc:64002 LOC108258972 coding upstream 70966 8289161 ~ 8291351 (-)
gk gk,LOC108259045,LOC107700103,LOC107667651,LOC107742635 coding upstream 76684 8294879 ~ 8319843 (-)
poglut1 poglut1 coding upstream 111455 8329650 ~ 8336868 (-)
LOC113537751 vangl1,LOC107588836,LOC107552384,LOC107739810 coding upstream 137452 8355647 ~ 8415941 (-)
G372471 NA non-coding downstream 8679 8202768 ~ 8204224 (-)
G372307 NA non-coding downstream 196515 8016105 ~ 8016388 (-)
G372300 NA non-coding downstream 223705 7988950 ~ 7989198 (-)
G372288 NA non-coding downstream 235912 7976777 ~ 7976991 (-)
G372168 NA non-coding downstream 303351 7909124 ~ 7909552 (-)
G372522 NA non-coding upstream 210409 8428604 ~ 8444065 (-)
G372742 NA non-coding upstream 556837 8775032 ~ 8788141 (-)
LOC113537261 NA non-coding upstream 745390 8963585 ~ 8965621 (-)
G373288 NA non-coding upstream 1541546 9759741 ~ 9759949 (-)
G373292 neurl1,LOC107676877,LOC107746052 non-coding upstream 1545424 9763619 ~ 9764526 (-)
cars2 cars2 other downstream 128364 8069402 ~ 8084539 (-)
fam155a LOC108258331 other downstream 219807 7912210 ~ 7993096 (-)
G372086 LOC108258915 other downstream 488108 7718263 ~ 7724795 (-)
LOC113537388 arhgap6 other downstream 734394 7357271 ~ 7478509 (-)
LOC113537271 LOC108258282 other downstream 1144372 7058835 ~ 7068531 (-)
LOC113537489 NA other upstream 43240 8261435 ~ 8267272 (-)
timmdc1 timmdc1 other upstream 102673 8320868 ~ 8329026 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other upstream 211367 8429562 ~ 8432438 (-)
tsga10 LOC108258346 other upstream 373212 8591407 ~ 8610841 (-)
LOC117596103 LOC102201964,LOC102304430 other upstream 1660648 9878843 ~ 9918779 (-)

Expression


Co-expression Network