LOC113537579


Basic Information

Item Value
gene id LOC113537579
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8556011 ~ 8569035 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932136.2
aGCAGTTAATGGTGTTATACGAGCTGCATAGGCGCAGTGGTGCGTCTGTGTACAACATAAACTTCAGTCAAAAACTAAACCTTGTTGATTTAGATAGCAGTCATACTGCTCACTCCTACTCCGTCCTACATCATTACCGCCGCATAACATCCGTTACATTACTAACATTGCGTTATTTTACTTTTGCACTCCAGGAGAAAATGCCTGGGGTCTTGATTTTACTCGTAACTTTGATCTTTTCTGTATCATCTTTCATATATGCAGAGAACGAGAAGGGAATATCCACTGTTAAAGGTCATGCTACTATTCTCTTCTGTGGATCAGACCTGGACAATAAATTCTCAACATTTATTTGGACTAAAGATAACCACACTTTAGAACCAAGCTCACGTATTCAAATGCAAGGCCATTTATTGTGGATTTTAAACACTACATCATCCGACGGTGGCCTTTATGTATGCCGAAGCACCAACTCAACTTGCAGCATGGAAAAGcaagtgtttctgtttgttgaGGCCGGACCTTGTCCAAGTCCCGATGCCACAAAGCTGGCACTGGAGGAAACCAGCATCACCCTTTCCTGTGCTGAAGAACATGTTCCAGTTCTGGGCCAGAGATTGCAAGTGCAGTGGTGGAAGGACTGCATGTCAACAGGCATACAAGGCAGTGAATTCAGTCTTTTTAATGTATCCATGAGCAACAACGGCAACTACACCTGTCTGGTCAGCTTTAGATATGAAGACAAAAACTACACAGCATCTCACACCTTTGAGCTCGCAGTGATAATGAAAGAGCCTGTGAATAAACCTAAGGTAATACAGCCTCGTAACCAGACTCTGCATGTCAAGCCAGGTGTGGAAATCAAATTGGAATGCATTGTATTCATTGGTTTTGGAGAGGACTCAGTGCTTGAAACCTCTGCGTACTGGACAATAAATCATTCTTACACTGAGAGCTACCCAGAGCTTCAGCAGAACCTGACCACagagatgagagagaattCTGGGCTGTATGGCAATTTAACATTGTTCATTCCTAAAGTTTTGCCTGAATTCTTCGGTGTACCTTTTCACTGTAACATTTTAAGTCCCAGTGGAGGGGACACGGGTCAGGTGTGGCTCAGCCAAGATACCAACCACATATGGCTGATTATCATTCCGTTTCTCATATTAGCAGCTGTTGTGTGTGCTGTCCTActgaatttctttaaaatagaCCTAATTCTAGCCTATCGTCATCTTTGTGCCAAAGGCAAAGCCACTCAAGAGGGGAGCCTATACAATGCGTATGTGTTGTATCTCCACGGCAAAAGTCCTGGTTCCTCTACAGCAGAGGACTTGGCCCTGAGGATCTTACCTGGGATGCTGGAGCAGCAGCATAACCTCAAACTGTTCATACAAGGCCgtgacacagacacagaagTGAGTATTGCCAGAATATCTGATGTGCTGAGCCAGAGCAAGGCGGTGGTGCTCATCCTCCCAGGCAATAATGGAGAAGAGAATTTGGTTCCACTAAGTAAAGAGCAAAACAGGCTTGAAGACTCACAACTCTCAGTCCTTTTTTCTGACATCGCTCACTCCGGCGTCCCACTCCTTCTGGTAGAGAGTGAGGAGAATGCTGATTATTTGCTGCTGCCAGAGTCTATCCAGTCCATCATTAAAAAGGAGAGAGTACTGAAGTGGAAGCCGACAGTGCAACCCAATGGTCGCTTCTGGAAGCAGCTCAGATATCACATGACCTGAGAACATGCCTCTGAATAACAGCAtgcaataataatttttttttttaaaaactcacgCTGTAAAATTATGCTACGCTAATATACTGTACCTTTGCTTAAACTATGCTATACCTTTTCACCATGTAACAATCtatatcatttaaattatttcacaCTTGCATTGCCACTGTACTCTTACACATTGTAACCTTTAAACAGATACTGTACTATGATACAGTTATCATGCTATAAAGTCTTCATACAGTTCCACCTCTAATAGAAATATTGCTACTGATCAGAATCTAGACACTGACCAGAAAGAAATTCAGTGTTACCCAAGAACCTAGAAATGTAAACCAGAAGCTTCTGTTTtgcttccttctttctctttctgtccaaACATTTCATGCTacagtgaataaaaacagatgtCAGAGCTCCTTTGTATTACATTAAA
>XM_034300034.1
cggagtggcctacacagagtcttgacctcaactccactgaacacctttgggatgaactggaacgccgactgcaccccagaccacCTCGACCCAACTGGATGAATGagcaaaaatccccacagccatgctccaagaTCTACTGAAATCCTTTGCAGaacagtggaggttattataacagcaaatatgGAGAACGAGAAGGGAATATCCACTGTTAAAGGTCATGCTACTATTCTCTTCTGTGGATCAGACCTGGACAATAAATTCTCAACATTTATTTGGACTAAAGATAACCACACTTTAGAACCAAGCTCACGTATTCAAATGCAAGGCCATTTATTGTGGATTTTAAACACTACATCATCCGACGGTGGCCTTTATGTATGCCGAAGCACCAACTCAACTTGCAGCATGGAAAAGcaagtgtttctgtttgttgaGGCCGGACCTTGTCCAAGTCCCGATGCCACAAAGCTGGCACTGGAGGAAACCAGCATCACCCTTTCCTGTGCTGAAGAACATGTTCCAGTTCTGGGCCAGAGATTGCAAGTGCAGTGGTGGAAGGACTGCATGTCAACAGGCATACAAGGCAGTGAATTCAGTCTTTTTAATGTATCCATGAGCAACAACGGCAACTACACCTGTCTGGTCAGCTTTAGATATGAAGACAAAAACTACACAGCATCTCACACCTTTGAGCTCGCAGTGATAATGAAAGAGCCTGTGAATAAACCTAAGGTAATACAGCCTCGTAACCAGACTCTGCATGTCAAGCCAGGTGTGGAAATCAAATTGGAATGCATTGTATTCATTGGTTTTGGAGAGGACTCAGTGCTTGAAACCTCTGCGTACTGGACAATAAATCATTCTTACACTGAGAGCTACCCAGAGCTTCAGCAGAACCTGACCACagagatgagagagaattCTGGGCTGTATGGCAATTTAACATTGTTCATTCCTAAAGTTTTGCCTGAATTCTTCGGTGTACCTTTTCACTGTAACATTTTAAGTCCCAGTGGAGGGGACACGGGTCAGGTGTGGCTCAGCCAAGATACCAACCACATATGGCTGATTATCATTCCGTTTCTCATATTAGCAGCTGTTGTGTGTGCTGTCCTActgaatttctttaaaatagaCCTAATTCTAGCCTATCGTCATCTTTGTGCCAAAGGCAAAGCCACTCAAGAGGGGAGCCTATACAATGCGTATGTGTTGTATCTCCACGGCAAAAGTCCTGGTTCCTCTACAGCAGAGGACTTGGCCCTGAGGATCTTACCTGGGATGCTGGAGCAGCAGCATAACCTCAAACTGTTCATACAAGGCCgtgacacagacacagaagTGAGTATTGCCAGAATATCTGATGTGCTGAGCCAGAGCAAGGCGGTGGTGCTCATCCTCCCAGGCAATAATGGAGAAGAGAATTTGGTTCCACTAAGTAAAGAGCAAAACAGGCTTGAAGACTCACAACTCTCAGTCCTTTTTTCTGACATCGCTCACTCCGGCGTCCCACTCCTTCTGGTAGAGAGTGAGGAGAATGCTGATTATTTGCTGCTGCCAGAGTCTATCCAGTCCATCATTAAAAAGGAGAGAGTACTGAAGTGGAAGCCGACAGTGCAACCCAATGGTCGCTTCTGGAAGCAGCTCAGATATCACATGACCTGAGAACATGCCTCTGAATAACAGCAtgcaataataatttttttttttaaaaactcacgCTGTAAAATTATGCTACGCTAATATACTGTACCTTTGCTTAAACTATGCTATACCTTTTCACCATGTAACAATCtatatcatttaaattatttcacaCTTGCATTGCCACTGTACTCTTACACATTGTAACCTTTAAACAGATACTGTACTATGATACAGTTATCATGCTATAAAGTCTTCATACAGTTCCACCTCTAATAGAAATATTGCTACTGATCAGAATCTAGACACTGACCAGAAAGAAATTCAGTGTTACCCAAGAACCTAGAAATGTAAACCAGAAGCTTCTGTTTtgcttccttctttctctttctgtccaaACATTTCATGCTacagtgaataaaaacagatgtCAGAGCTCCTTTGTATTACATTAAA

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
ko03050 Proteasome
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932136.2 True 2180 mRNA 0.42 10 8556011 8567476
XM_034300034.1 False 2103 mRNA 0.43 10 8556011 8569035

Neighbor

gene id symbol gene type direction distance location
LOC113537664 zc3h12c,LOC108259022 coding downstream 1703 8529482 ~ 8554308 (-)
LOC113537751 vangl1,LOC107588836,LOC107552384,LOC107739810 coding downstream 140070 8355647 ~ 8415941 (-)
poglut1 poglut1 coding downstream 219143 8329650 ~ 8336868 (-)
gk gk,LOC108259045,LOC107700103,LOC107667651,LOC107742635 coding downstream 236168 8294879 ~ 8319843 (-)
zgc:64002 LOC108258972 coding downstream 264660 8289161 ~ 8291351 (-)
cracdlb LOC108259003 coding upstream 3236 8572271 ~ 8590418 (-)
col17a1a col17a1 coding upstream 71477 8640512 ~ 8669319 (-)
LOC113537765 NA coding upstream 125502 8694537 ~ 8697313 (-)
pdcd11 pdcd11,LOC104950700 coding upstream 141348 8710383 ~ 8740417 (-)
taf5 taf5,LOC107583167,LOC107684290,LOC107676012 coding upstream 174417 8743452 ~ 8752250 (-)
G372522 NA non-coding downstream 111946 8428604 ~ 8444065 (-)
G372471 NA non-coding downstream 351787 8202768 ~ 8204224 (-)
G372307 NA non-coding downstream 539623 8016105 ~ 8016388 (-)
G372300 NA non-coding downstream 566813 7988950 ~ 7989198 (-)
G372288 NA non-coding downstream 579020 7976777 ~ 7976991 (-)
G372742 NA non-coding upstream 205997 8775032 ~ 8788141 (-)
LOC113537261 NA non-coding upstream 394550 8963585 ~ 8965621 (-)
G373288 NA non-coding upstream 1190706 9759741 ~ 9759949 (-)
G373292 neurl1,LOC107676877,LOC107746052 non-coding upstream 1194584 9763619 ~ 9764526 (-)
G373296 neurl1,LOC103384027 non-coding upstream 1198004 9767039 ~ 9767482 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 123573 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 226985 8320868 ~ 8329026 (-)
LOC113537489 NA other downstream 288739 8261435 ~ 8267272 (-)
cars2 cars2 other downstream 471472 8069402 ~ 8084539 (-)
fam155a LOC108258331 other downstream 562915 7912210 ~ 7993096 (-)
tsga10 LOC108258346 other upstream 22372 8591407 ~ 8610841 (-)
LOC117596103 LOC102201964,LOC102304430 other upstream 1309808 9878843 ~ 9918779 (-)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 1853117 10422152 ~ 10435367 (-)
lipt1 lipt1 other upstream 2302189 10871224 ~ 10872556 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 3509856 12078891 ~ 12084049 (-)

Expression


Co-expression Network