tspan34


Basic Information

Item Value
gene id tspan34
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11434514 ~ 11446094 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932139.2
CAGCCATTTGATCCCAGTTCATCACGGGACATAACGCTCCACAAATAACGCTCCACACCTGGACCAGTGAACTCACCTGTGAACAGgacaaaacagaaaaaacttcAAGATGTGCTGCTCGTGGTTCCTGAAAACAATGATGTTCTTCTTCAATGGGGTCATCTTTTTGGCAGGTGCCGCAATCCTGGGCGTAGGGATCTGGGTGACAGTAGACAGCAGCTCCCTGCTTGGTGTATTATCTAATATTGACGGTGCGCCCTCTGAGTTGGCTCAGCTGGCTAACGTGGGCTACCTGCTGATCGTCGTGGGGTCCATACTCGCCATCATGGGCTTCCTGGGCTGCTGTGGGGCCATAACTGAGAACAAGTGCATGCTTCTGATCTTCTTCATCATCGTGCTTATCATCTTCATTGCTGAGGTGGCTGGGGCCATTGTAGTTCTGGTGTTCAAGCCCTTGgCCAAGGATATTTTTGTCAGTCTGAATGAGAATTTTGTTAAGGCCATCAGGAAAGACTATGGAGACCAAAAAGACTTCACAGCCGTCCTGAATAACACTATGATACAgCTGAAATGCTGTGGATTCAACAACTACACCGACTTCGATGGATCTCCTTTTGAATCGTCCACCAAGCTTTACCCAGAGCCTTGCTGCCCTGGCAGCAATAAGTGTGATTTGAGCACAGCAGAAAGCAAGaacgTGGAGGGTTGTTTCAACGCACTGGTTGAACTGATAGAAAATAACGCTGCTTTGCTAGGAGGCGTGGCCCTTGGCATCGCTGCTCTAGAGattGCTGCGATGGTTGTGTCCATGGTCCTGTACAATAACATTGGGAAATAATTACAAAAGCTAAAGTTCCACCAAGCACTGATTTATGTACTTCTTCTTAGTACTACTAACTTCACTGCAGGCTGACTGCTGTCTTACAGCTGCCTATTGATACAAATTCTCACAAGTCAACCCTTATGAAAAGTTACCAGTGTTTAAGGTCAGAGTTTGAAGGGGTTCATTAGTACGAAACGCAACTAACCTGCGTTAATTATAATCTGTGTGAATATTGCAAGAGATCGGATTGCATAGGCTAACTTCACCCAAGCTTGCTAATAAGACTACGCATGAATAAGCTCTACTTAGAAACAGTTAATatgatcttttttatttaatgtctgttGGTGCCTATTagcgtttatttatttgtaagttTGTAAGATTCATGTTGGATGTCATATTAATCAGAGCATTGTCACCCACACTCACAGTTCCTAACACTCATATTGTTGGTTAGACTCTTGTCTAGTCCAGATTTGAATATTTGCTTCCTGTTTACTCtgtcataaaaacaaaatactatGTAACATTGGCCATGATGCATATGGTAAATGAATACTGTCTTGTAAAACCCTTAATGCCTTATCTAAAATTTGAAATGATCTTGTTCTGTTGGCTCCATTTTGCTTCTGTTTTAACTGAAATGCGTAAAGGTTTCTGCCGATGGAACAAGACTAGAAACAGacaataatatcataataaaaatattatatttctagTTGATATCATTTTTTCACTGTAAAGCAAGATGTCCTCTCTTATGTATGTATAGTTTTATGTTGTAATGAAATgtactgaaatgtttatttgtgtaaatctaaataaaagacTTATTCGTGTAGTA
>XM_026932140.2
TAATGTCGTGAAATAGAAAGAGGAAATACACTTCATGCCACTTGAGCAGGAAAGTATAAATGTGCATTACTCTGTGTTATCGAAAGTGATGAAGATTAGTGTGGCCCACAGGGTTCTGTGAAAAAGCTAACAAGGTCAGACCAAGAGCAGgaataagacaaaacagaaaaaacttcAAGATGTGCTGCTCGTGGTTCCTGAAAACAATGATGTTCTTCTTCAATGGGGTCATCTTTTTGGCAGGTGCCGCAATCCTGGGCGTAGGGATCTGGGTGACAGTAGACAGCAGCTCCCTGCTTGGTGTATTATCTAATATTGACGGTGCGCCCTCTGAGTTGGCTCAGCTGGCTAACGTGGGCTACCTGCTGATCGTCGTGGGGTCCATACTCGCCATCATGGGCTTCCTGGGCTGCTGTGGGGCCATAACTGAGAACAAGTGCATGCTTCTGATCTTCTTCATCATCGTGCTTATCATCTTCATTGCTGAGGTGGCTGGGGCCATTGTAGTTCTGGTGTTCAAGCCCTTGgCCAAGGATATTTTTGTCAGTCTGAATGAGAATTTTGTTAAGGCCATCAGGAAAGACTATGGAGACCAAAAAGACTTCACAGCCGTCCTGAATAACACTATGATACAgCTGAAATGCTGTGGATTCAACAACTACACCGACTTCGATGGATCTCCTTTTGAATCGTCCACCAAGCTTTACCCAGAGCCTTGCTGCCCTGGCAGCAATAAGTGTGATTTGAGCACAGCAGAAAGCAAGaacgTGGAGGGTTGTTTCAACGCACTGGTTGAACTGATAGAAAATAACGCTGCTTTGCTAGGAGGCGTGGCCCTTGGCATCGCTGCTCTAGAGattGCTGCGATGGTTGTGTCCATGGTCCTGTACAATAACATTGGGAAATAATTACAAAAGCTAAAGTTCCACCAAGCACTGATTTATGTACTTCTTCTTAGTACTACTAACTTCACTGCAGGCTGACTGCTGTCTTACAGCTGCCTATTGATACAAATTCTCACAAGTCAACCCTTATGAAAAGTTACCAGTGTTTAAGGTCAGAGTTTGAAGGGGTTCATTAGTACGAAACGCAACTAACCTGCGTTAATTATAATCTGTGTGAATATTGCAAGAGATCGGATTGCATAGGCTAACTTCACCCAAGCTTGCTAATAAGACTACGCATGAATAAGCTCTACTTAGAAACAGTTAATatgatcttttttatttaatgtctgttGGTGCCTATTagcgtttatttatttgtaagttTGTAAGATTCATGTTGGATGTCATATTAATCAGAGCATTGTCACCCACACTCACAGTTCCTAACACTCATATTGTTGGTTAGACTCTTGTCTAGTCCAGATTTGAATATTTGCTTCCTGTTTACTCtgtcataaaaacaaaatactatGTAACATTGGCCATGATGCATATGGTAAATGAATACTGTCTTGTAAAACCCTTAATGCCTTATCTAAAATTTGAAATGATCTTGTTCTGTTGGCTCCATTTTGCTTCTGTTTTAACTGAAATGCGTAAAGGTTTCTGCCGATGGAACAAGACTAGAAACAGacaataatatcataataaaaatattatatttctagTTGATATCATTTTTTCACTGTAAAGCAAGATGTCCTCTCTTATGTATGTATAGTTTTATGTTGTAATGAAATgtactgaaatgtttatttgtgtaaatctaaataaaagacTTATTCGTGTAGTA

Function

NR:

description
PREDICTED: tetraspanin-1-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17348 TSPAN1; tetraspanin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932139.2 False 1670 mRNA 0.41 8 11434514 11446094
XM_026932140.2 True 1740 mRNA 0.40 8 11434514 11444936

Neighbor

gene id symbol gene type direction distance location
psmb13a LOC108258499,LOC108433729,LOC103024985,LOC106569958,LOC107104818 coding downstream 24400 11404116 ~ 11410114 (-)
LOC113537507 psmb8a,psmb8,LOC108258500,LOC108258501,LOC107694758,LOC107549856,LOC107554342 coding downstream 31941 11399622 ~ 11402573 (-)
psmb12 pb9la,lmp2/d,LOC108433731,LOC103024673,LOC106569959,LOC106588399 coding downstream 43312 11385636 ~ 11391202 (-)
psmb9a psmb9-a,psmb9-b,psmb9a,LOC108258508,LOC108433730,LOC103024362 coding downstream 50243 11380912 ~ 11384271 (-)
LOC113537638 LOC108258487,LOC108258488 coding downstream 54711 11374505 ~ 11379803 (-)
rab3da rab3da,LOC108258507,LOC108435977,LOC103040938,LOC107757002,LOC107747429,LOC107675349,LOC107569532 coding upstream 2285 11448379 ~ 11464622 (-)
pld6 pld6 coding upstream 21310 11467404 ~ 11471543 (-)
trnar-ucu_14 NA coding upstream 26786 11472880 ~ 11472971 (-)
spp2 spp2 coding upstream 93286 11539380 ~ 11543697 (-)
alg11 alg11,LOC107556718,LOC107705036,LOC107588826 coding upstream 100880 11546974 ~ 11552722 (-)
G374230 ddx39aa,ddx39ab,LOC100304672,LOC107603018,LOC107692155,LOC105901571 non-coding downstream 74093 11358843 ~ 11360421 (-)
G374198 grin2b,grin2bb,LOC108258482,LOC107603025,LOC107551907,LOC107676879 non-coding downstream 191677 11238241 ~ 11242837 (-)
G374196 LOC108258482,LOC107676879,LOC107551907,LOC107603025,LOC107692185 non-coding downstream 197083 11237062 ~ 11237431 (-)
G374111 NA non-coding downstream 286841 11147454 ~ 11147673 (-)
G374105 NA non-coding downstream 294703 11139183 ~ 11139811 (-)
G374370 NA non-coding upstream 147872 11593966 ~ 11594981 (-)
G374371 NA non-coding upstream 149098 11595192 ~ 11596239 (-)
G374442 NA non-coding upstream 222899 11668993 ~ 11669256 (-)
G374495 c26h3orf70 non-coding upstream 306480 11752574 ~ 11755115 (-)
G374657 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393 non-coding upstream 488440 11934534 ~ 11943075 (-)
lipt1 lipt1 other downstream 561958 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 999147 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1515735 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2823673 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 3002076 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 632797 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1178957 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 1861619 13307713 ~ 13320530 (-)
G375428 NA other upstream 1993125 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2526242 13972336 ~ 13980251 (-)

Expression


Co-expression Network