cryaa (cryaa,LOC106939151)


Basic Information

Item Value
gene id cryaa
gene name cryaa,LOC106939151
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8127561 ~ 8131183 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932151.2
CAAATTTCCCTAGCTATTCAAATTCCAATCCTCTGCTTTAGTTTGTTTTGGCAGCTAGGGCCAGATTGTCATCAGTGCCATTCTGCTGACACTACCATTCCCACCATGAGCTCATGCTATTCCAGATGGATCTAATTGTAAGCCCCTTTTCCTGGCTCTTTCTGTATATAAAGGCAGGTTGTGGCCACAGTCAAGGGTAGTACACACCCTTTGACAATTCCTGTCTTCTCTTGGATCCTTGCACAGCCTCCTCTCAGCTCCCTCCACTGCACTTATTCTCTTCAAGCACACTCTTTTAAAGGGTGTCCAAAGCAAAGGCTTAGAATTGGACCAAGATTGACCCAGCAACAGCAAGCTGAGAAGTTATGGATATTGCCATCCAGTACCCGTGGTTCAGACGTGCCCTGAGCTACCCTTCTCGCCTCTTTGACCAGTTCTTTGGAGATGGTCTGTTTGATCATGACCTCTTCCCCTTCACTTCCACCACCATCAGCCCTTACTACCGCCACGCCCTCTTCCGCAGTTTCCTGGACTCCTCCAACTCTGGCATCTCTGAGGTGAGGTCTGACAGGGACAGGTTCATGGTTTACCTGGATGTGAAACACTTCTCCCCTGAGGAGCTCAGCATAAAGGTGTCAGATGACTATGTGGAGATTCATGGCAAGCATGGGGAGAGACAGGACGACCATGGCTACGTCTCACGGGAGTTCCACCGCCGCTACCGTCTACCCTCCAATGTTGATCAGTCAGCCATCACCTGTACACTTTCAGGTGATGGCCTGCTCACCATCTGCGGCCCAAAAACAGGTGGCTCAGAATACGGGCGTGGAGATCGCAGCATTCCTGTCACCCACGATGACAAACCCAATCCTGCCCCTTCCTCTTAGACAAGTGGATGAGGGTGCATGAGCATGGCTCAGCAGGGGCTCTAATTGTTGAGATTATTATAATCTAGTATATTGGGGAGAAACAGATTAAGAGGAATGGATGGACACTGTTTGGAAAGTTCTTTCAAATCCAGCCACTccagaataaaatcaaatttaggAAGCTGATTTACTTTTCTTTGAAGAAGTAACAAACAAGGAAAAATAAGTTTGGTTACAAAATTAGTTTCTGTTAAGTAGGGCTGTGATTTGCAAGAGTTTCTATATACAATCATCCAGCCTCCTAACTGTTCTTCCTATGTCtgatcttttctcttttttgcttgtttgtcaCCTGACTTTTTCTTTGCCTTCTCTCCTCTAACCTTGTTTTACTGAAACGCCCCTCACC

Function

symbol description
cryaa Enables unfolded protein binding activity. Acts upstream of or within lens development in camera-type eye. Is expressed in eye; lens; and solid lens vesicle. Used to study cataract. Human ortholog(s) of this gene implicated in cataract 9 multiple types. Orthologous to human CRYAA (crystallin alpha A).

NR:

description
PREDICTED: alpha-crystallin A chain

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0001654 eye development biological_process
GO:0046872 metal ion binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09541 CRYAA; crystallin, alpha A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932151.2 True 1278 mRNA 0.47 3 8127561 8131183

Neighbor

gene id symbol gene type direction distance location
ankrd10a ankrd10 coding downstream 22209 8091366 ~ 8105352 (-)
LOC113537306 ube2a,ube2al,LOC108259060,LOC103029486,LOC103021436,LOC107552373,LOC105934920,LOC107588833 coding downstream 37464 8087780 ~ 8090097 (-)
LOC113537312 LOC108259043 coding downstream 61110 8062221 ~ 8066451 (-)
irs2a LOC108258957,LOC108434672 coding downstream 73016 8042485 ~ 8054545 (-)
lig4 lig4,LOC108412030,LOC107654268 coding downstream 117328 8006372 ~ 8010233 (-)
cbsa cbs,LOC107742639,LOC107654262,LOC107667662 coding upstream 1804 8132987 ~ 8148533 (-)
u2af1 u2af1,LOC102219527,LOC105917412,LOC103389252,LOC101158751 coding upstream 18957 8150140 ~ 8157560 (-)
rab9a rab9a,LOC108434684,LOC105902834,LOC107654259,LOC107667663 coding upstream 81720 8212903 ~ 8218195 (-)
LOC113537479 tceanc coding upstream 87456 8218639 ~ 8222543 (-)
zgc:64002 LOC108258972 coding upstream 157978 8289161 ~ 8291351 (-)
G372307 NA non-coding downstream 111173 8016105 ~ 8016388 (-)
G372300 NA non-coding downstream 138363 7988950 ~ 7989198 (-)
G372288 NA non-coding downstream 150570 7976777 ~ 7976991 (-)
G372168 NA non-coding downstream 218009 7909124 ~ 7909552 (-)
G372132 NA non-coding downstream 346356 7780062 ~ 7781205 (-)
G372471 NA non-coding upstream 71585 8202768 ~ 8204224 (-)
G372522 NA non-coding upstream 297421 8428604 ~ 8444065 (-)
G372742 NA non-coding upstream 643849 8775032 ~ 8788141 (-)
LOC113537261 NA non-coding upstream 832402 8963585 ~ 8965621 (-)
G373288 NA non-coding upstream 1628558 9759741 ~ 9759949 (-)
cars2 cars2 other downstream 43022 8069402 ~ 8084539 (-)
fam155a LOC108258331 other downstream 134465 7912210 ~ 7993096 (-)
G372086 LOC108258915 other downstream 402766 7718263 ~ 7724795 (-)
LOC113537388 arhgap6 other downstream 649052 7357271 ~ 7478509 (-)
LOC113537271 LOC108258282 other downstream 1059030 7058835 ~ 7068531 (-)
LOC113537489 NA other upstream 130252 8261435 ~ 8267272 (-)
timmdc1 timmdc1 other upstream 189685 8320868 ~ 8329026 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other upstream 298379 8429562 ~ 8432438 (-)
tsga10 LOC108258346 other upstream 460224 8591407 ~ 8610841 (-)
LOC117596103 LOC102201964,LOC102304430 other upstream 1747660 9878843 ~ 9918779 (-)

Expression


Co-expression Network