u2af1 (u2af1,LOC102219527,LOC105917412,LOC103389252,LOC101158751)


Basic Information

Item Value
gene id u2af1
gene name u2af1,LOC102219527,LOC105917412,LOC103389252,LOC101158751
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8150140 ~ 8157560 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932222.2
AGGCAAAGAAAATTCACGCGCGAGGCGTGGAATCTGCTCGAATGCTCACTATTGGGTGACGACAGACGCGTAATTTGATGACGAAGAACACAAGTGACCCGACGACGGGAAGATGGCGGAGTACCTAGCGTCCATTTTTGGTACAGAGAAAGACAAGGTCAACTGCTCCTTCTACTTTAAGATTGGAGCATGTCGACATGGAGATCGCTGCTCCAGACTCCATAATAAACCAACTTTCAGCCAGACTATTTTGATCCAGAACATCTACCGTAACCCTCAGAACAGTGCTCAGACAGCTGACGCCTCTCGCTGTGCCGTGAGCGACGTGGAAATGCAGGAGCATTATGATGAGTTTTTCGAGGAAGTCTTCACAGAAATGGAGGAGAAGTACGGTGAGGTGGAggagatgaatgtgtgtgataatCTGGGCGATCACCTTGTCGGCAACGTTTATGTGAAGTTCCGGCGTGAGGAGGATGCCGAGAAAGCTGTGATGGACCTGAATAACCGCTGGTTCAACAGCCAGCCCATCCATGCCGAACTCTCTCCGGTTACTGACTTCAGAGAAGCCTGCTGCAGGCAGTATGAAATGGGGGAGTGCACTCGAGGTGGCTTCTGTAACTTCATGCACCTAAAGCCGATCTCTCGCGAGCTGAGGAGGGAACTGTACGGACGCCGTAGGAAAAGGCACCGCTCTCGTTCTCGGTCTCGTGACCGTCGCTCTCGCTCGCGGGACCGCGGCCGTCGCGACCGGGAGAGGAGGAGATCAAGGGATCGTGAACGCTCTGGAAGGTTTTGAGTCATCATGTGAACCCTTTTTGGTTTTTACCCTTCGGTGTAGTGCTCTCCCCACCCCAAATGACCAACATTTGCTTGGAACATTGGACTTTGTTCTGTACCTTActtttaccctttttttttttttttctctttttgtttttttaagatcaCACGAATATGAAAGCTCAGTTTCTCAATAAAAGTACATTGTTATTAATTCCGTC

Function

symbol description
u2af1 Predicted to enable pre-mRNA 3'-splice site binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U2AF complex and spliceosomal complex. Orthologous to human U2AF1 (U2 small nuclear RNA auxiliary factor 1).

NR:

description
PREDICTED: splicing factor U2AF 35 kDa subunit

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12836 U2AF1; splicing factor U2AF 35 kDa subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932222.2 True 1004 mRNA 0.49 8 8150140 8157560

Neighbor

gene id symbol gene type direction distance location
cbsa cbs,LOC107742639,LOC107654262,LOC107667662 coding downstream 1607 8132987 ~ 8148533 (-)
cryaa cryaa,LOC106939151 coding downstream 18957 8127561 ~ 8131183 (-)
ankrd10a ankrd10 coding downstream 44788 8091366 ~ 8105352 (-)
LOC113537306 ube2a,ube2al,LOC108259060,LOC103029486,LOC103021436,LOC107552373,LOC105934920,LOC107588833 coding downstream 60043 8087780 ~ 8090097 (-)
LOC113537312 LOC108259043 coding downstream 83689 8062221 ~ 8066451 (-)
rab9a rab9a,LOC108434684,LOC105902834,LOC107654259,LOC107667663 coding upstream 55343 8212903 ~ 8218195 (-)
LOC113537479 tceanc coding upstream 61079 8218639 ~ 8222543 (-)
zgc:64002 LOC108258972 coding upstream 131601 8289161 ~ 8291351 (-)
gk gk,LOC108259045,LOC107700103,LOC107667651,LOC107742635 coding upstream 137319 8294879 ~ 8319843 (-)
poglut1 poglut1 coding upstream 172090 8329650 ~ 8336868 (-)
G372307 NA non-coding downstream 133752 8016105 ~ 8016388 (-)
G372300 NA non-coding downstream 160942 7988950 ~ 7989198 (-)
G372288 NA non-coding downstream 173149 7976777 ~ 7976991 (-)
G372168 NA non-coding downstream 240588 7909124 ~ 7909552 (-)
G372132 NA non-coding downstream 368935 7780062 ~ 7781205 (-)
G372471 NA non-coding upstream 45208 8202768 ~ 8204224 (-)
G372522 NA non-coding upstream 271044 8428604 ~ 8444065 (-)
G372742 NA non-coding upstream 617472 8775032 ~ 8788141 (-)
LOC113537261 NA non-coding upstream 806025 8963585 ~ 8965621 (-)
G373288 NA non-coding upstream 1602181 9759741 ~ 9759949 (-)
cars2 cars2 other downstream 65601 8069402 ~ 8084539 (-)
fam155a LOC108258331 other downstream 157044 7912210 ~ 7993096 (-)
G372086 LOC108258915 other downstream 425345 7718263 ~ 7724795 (-)
LOC113537388 arhgap6 other downstream 671631 7357271 ~ 7478509 (-)
LOC113537271 LOC108258282 other downstream 1081609 7058835 ~ 7068531 (-)
LOC113537489 NA other upstream 103875 8261435 ~ 8267272 (-)
timmdc1 timmdc1 other upstream 163308 8320868 ~ 8329026 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other upstream 272002 8429562 ~ 8432438 (-)
tsga10 LOC108258346 other upstream 433847 8591407 ~ 8610841 (-)
LOC117596103 LOC102201964,LOC102304430 other upstream 1721283 9878843 ~ 9918779 (-)

Expression


Co-expression Network