cracdlb (LOC108259003)


Basic Information

Item Value
gene id cracdlb
gene name LOC108259003
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8572271 ~ 8590418 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932228.2
GCAATTCACAGCGTTCGAACACCTGCAGGTCGGAGATGGTCGCGCGCTCCACCGGTGCAGATGTCAGTGATGTAATGGCAACGGATGGTGGTTGTTAGTGTATGTGTGGGCACAGCCTTCTTCCCTGAGAGACGGAGACAAACAAGGGACAAAAAGGAAACCAcagaagagagtgaaagaagTGCTTACTGAGACTTCACGTCACCCTGCTGATATAGCGATGGAGTCCACCCAAGGAGAAGTGAGTGGAAACACAGAGGATGTCACAGGGAGGAAGAAGTCAAGGTTCAAGTTCCTCAAAGTCCGTCTTTTTGGGCGTCTGAAGAAAAAGGATACGGAAGGACGGATGAAGCAGAGCCAGTCTGCTGGTGATGTTACTGCACAGGACGGTGGGAGAGGTGGGGATGACTCAGAGGATGACTGTCACTATCCAGAGGGGACATTAGGCTCCAGAGCATTGTCTCATGACAGTATCTTCCTGGCTGATCAGGTTCAGTCCTCACAGCCAACGCGGGTCCTCTCACAGGAGAATGTTCACAGCAAGATTAAAGCTCTGCAGTTGAAGCTACAGCAACAGAACATGCGACTGGCTCCTCCAATGTTGATTCCTGGAAAGCGAATGGAAGACTCCGGAACAACTTCTGAGGATGATGGCTTACCTCGTAGTCCTCCTGAAATGTCCTTCCAAGAGGTAGCCATGCAAAGAGGAGCCTCTAAGTATCCTGAGGCTAAAAAACATCTCAGCTGGTTAAGTTTAGCAGGAACAGGcagtgaagaagaagagcagGGTGGTTTCTCACAACCCTCATCAAGACCCCTTTCTCCAGTCCCCCAACTGTCACCAGAAGAATCACCCTCTGCTGGTGTGGATTTCACAAGCCCCGCCCAGTATGTCCCCATCTTAGACAATTCGGCCGCTCGTCATCGCATGTCCATCAAGCCCAGGAATCAACGAGCTAGCaccagagggaaaaaaacacctAATCTGTACCGTCCTCAGTCCAGCAGCATGAACAGTCTGAATCAGTCATTTTCAGAGAAGGAAGAGACAGAGCAAAGTGTCACACCTATGGAGCTCATGCACCATTACTCCTACACTTCTGAAGATTCAACCCAAGCTGAGGAACCTGTATCACCTTCTTCCAGTGTACACGTACAGGAAGAACCAGAGAAAGTGATACCAATGGATTGCAGCCCATGTAGTCCATTAAACAACAACGCTACAGAACCGTTCCAAAATGAAGACAGAACCAACACCACTTTATCGGTGTACTCTGATGAGATTACAGCCCAGCATGCCTCAAACAACACCAGAGAACCCCTGGCAAAAGAATTTTCAAATAATAACCAATACACAAATAagattaatgttaatgaaaagCATCAGGCCAGTACTTCTTTAATACCTCTGTCCATTTGTCCAGTGGATATAGAAAgtgattataatgttataaaagaAAGAACTGATGATAGCTTGGCTGCATGTAGCACAGATCAAATGGAGTCATTGAAAATAACCATTGATGTGGATGTTTCTAAACCAACAGAAACTATAAGTAGGCCCCATCCTGTTCCTGCACCACGGACCAAAAAGCCAACCTTGTCAAGCTTAAATACCGGCACTCCTAAAGTATCAAGTGCAAAACCTACTGAGGCCGAAAAGGAGACAGCACCATCTTCAGGCCTGGCTGAATCATCAAGAGAAGATGATAAACCACTAAGACCCAGCTCATTTCGCTTTAACATTGCGTCTGCAAAATATCGCTCCAAATCAAGTGATGAGATTGTGGCTAAGCAGGATGACGAAAGCTCTGGTAATACACAGAAGGGCCAAGCCTACAACCAGAACCCGGTAGTACAAATGGAAAAAGTGGAAAACTCAAAATCCACTGAGGTTTGCAGAAATACTCCAGATAAAAGAAGCAGTTTGAGGAGGGAAGCAATAGGCCAAAATGTCTCCAAGACAGGAGTAGGTGACAATCCTGAAAAGTCTGAAGCATGTTTACAAAGCACAGAATGCctaaaaagtgaaaaactgaAAGCTGAGGAGTCCGAGGACAGAAGAGGTCTTTTTGGGGTTAAGCTGCGAAGCACGTCTCTGTCTCTAAAGTATCGCTCTGAGCTGCCCAAATTAGAGGCTGAAATGAAGCGACATAGTCTGGAAGGCTATCATAATCTAGCAGTAAAGGAACCAGTTTCCAGTGACACGGAAGCAGTTGGTAATGACAGAAAAGCAAATGTTCTGACAAATCCTGCACCACGGAGCTTGGATTCACAACAGGATCCAATTTTAGACAAAGGCAGTGAAACAGACAGCAGACCTGAACCAGCACGGAGGAGTCTTCCCCGAGAAAAGACTAGAGTCCACCAGTCCTTCTCCACTAAACCATCTACTCAGCCAGCTCCACCACCTTCTTTATTTACGTCTCAATCCTCCTCCACTCAACAACTTTCAAAACCATCCCTGCAGCCTAGACCTCACTTACCACCAACCAGCAAACCCCAACCAGTTAACCAATCATCACAGCAAATTGCACCCAAAACAGCTCCAAGGGCAATGGAAAGATGGACCATGTCCaatcagagagaagaaaagagttCTGTGAGCCAGTCTACACACAGAGATGAATTATTGGATTCTAAGGGACAATCAAAACATGGAGTCAGAAGTAACACCCAAACAGAGCCTGATCAGCAGCCTCCATCAGACAAAGCTCAGCCGACTTGGATGGAACTTGCCAAGAGAAAGTCTCTCGCCTGGAGCGACAAGACCTTAGATTCTatgaatttttaattatgtaaatagGTTCAAAATGCACATGGACAATTGACAGAATACTTAGTTTTTGTAAATACAGACTGGTTAAATAAGCTAGATGCGCAGGATTACCGTGCCTTGTCAAATAGTGAAagctaaaatactgaaaatctAGTCAAaacagaattatatatatatata
>XM_026932229.2
GTCATGCTAGATACGACTTGTGCCGAGTCAggttcattaaaatgcagcaggGTGACTGGGTTTAAATGAAGTGGGGGAGCAAACAAGCAAGGAGACAGATTGCAAAATGATTGCATTAAtgatattctaaaaaaaatgtaatcaggaTTTGTCACTTTGTCCTGGAGATACGGTCTGGAACTTAAGATGTCAGTGATGTAATGGCAACGGATGGTGGTTGTTAGTGTATGTGTGGGCACAGCCTTCTTCCCTGAGAGACGGAGACAAACAAGGGACAAAAAGGAAACCAcagaagagagtgaaagaagTGCTTACTGAGACTTCACGTCACCCTGCTGATATAGCGATGGAGTCCACCCAAGGAGAAGTGAGTGGAAACACAGAGGATGTCACAGGGAGGAAGAAGTCAAGGTTCAAGTTCCTCAAAGTCCGTCTTTTTGGGCGTCTGAAGAAAAAGGATACGGAAGGACGGATGAAGCAGAGCCAGTCTGCTGGTGATGTTACTGCACAGGACGGTGGGAGAGGTGGGGATGACTCAGAGGATGACTGTCACTATCCAGAGGGGACATTAGGCTCCAGAGCATTGTCTCATGACAGTATCTTCCTGGCTGATCAGGTTCAGTCCTCACAGCCAACGCGGGTCCTCTCACAGGAGAATGTTCACAGCAAGATTAAAGCTCTGCAGTTGAAGCTACAGCAACAGAACATGCGACTGGCTCCTCCAATGTTGATTCCTGGAAAGCGAATGGAAGACTCCGGAACAACTTCTGAGGATGATGGCTTACCTCGTAGTCCTCCTGAAATGTCCTTCCAAGAGGTAGCCATGCAAAGAGGAGCCTCTAAGTATCCTGAGGCTAAAAAACATCTCAGCTGGTTAAGTTTAGCAGGAACAGGcagtgaagaagaagagcagGGTGGTTTCTCACAACCCTCATCAAGACCCCTTTCTCCAGTCCCCCAACTGTCACCAGAAGAATCACCCTCTGCTGGTGTGGATTTCACAAGCCCCGCCCAGTATGTCCCCATCTTAGACAATTCGGCCGCTCGTCATCGCATGTCCATCAAGCCCAGGAATCAACGAGCTAGCaccagagggaaaaaaacacctAATCTGTACCGTCCTCAGTCCAGCAGCATGAACAGTCTGAATCAGTCATTTTCAGAGAAGGAAGAGACAGAGCAAAGTGTCACACCTATGGAGCTCATGCACCATTACTCCTACACTTCTGAAGATTCAACCCAAGCTGAGGAACCTGTATCACCTTCTTCCAGTGTACACGTACAGGAAGAACCAGAGAAAGTGATACCAATGGATTGCAGCCCATGTAGTCCATTAAACAACAACGCTACAGAACCGTTCCAAAATGAAGACAGAACCAACACCACTTTATCGGTGTACTCTGATGAGATTACAGCCCAGCATGCCTCAAACAACACCAGAGAACCCCTGGCAAAAGAATTTTCAAATAATAACCAATACACAAATAagattaatgttaatgaaaagCATCAGGCCAGTACTTCTTTAATACCTCTGTCCATTTGTCCAGTGGATATAGAAAgtgattataatgttataaaagaAAGAACTGATGATAGCTTGGCTGCATGTAGCACAGATCAAATGGAGTCATTGAAAATAACCATTGATGTGGATGTTTCTAAACCAACAGAAACTATAAGTAGGCCCCATCCTGTTCCTGCACCACGGACCAAAAAGCCAACCTTGTCAAGCTTAAATACCGGCACTCCTAAAGTATCAAGTGCAAAACCTACTGAGGCCGAAAAGGAGACAGCACCATCTTCAGGCCTGGCTGAATCATCAAGAGAAGATGATAAACCACTAAGACCCAGCTCATTTCGCTTTAACATTGCGTCTGCAAAATATCGCTCCAAATCAAGTGATGAGATTGTGGCTAAGCAGGATGACGAAAGCTCTGGTAATACACAGAAGGGCCAAGCCTACAACCAGAACCCGGTAGTACAAATGGAAAAAGTGGAAAACTCAAAATCCACTGAGGTTTGCAGAAATACTCCAGATAAAAGAAGCAGTTTGAGGAGGGAAGCAATAGGCCAAAATGTCTCCAAGACAGGAGTAGGTGACAATCCTGAAAAGTCTGAAGCATGTTTACAAAGCACAGAATGCctaaaaagtgaaaaactgaAAGCTGAGGAGTCCGAGGACAGAAGAGGTCTTTTTGGGGTTAAGCTGCGAAGCACGTCTCTGTCTCTAAAGTATCGCTCTGAGCTGCCCAAATTAGAGGCTGAAATGAAGCGACATAGTCTGGAAGGCTATCATAATCTAGCAGTAAAGGAACCAGTTTCCAGTGACACGGAAGCAGTTGGTAATGACAGAAAAGCAAATGTTCTGACAAATCCTGCACCACGGAGCTTGGATTCACAACAGGATCCAATTTTAGACAAAGGCAGTGAAACAGACAGCAGACCTGAACCAGCACGGAGGAGTCTTCCCCGAGAAAAGACTAGAGTCCACCAGTCCTTCTCCACTAAACCATCTACTCAGCCAGCTCCACCACCTTCTTTATTTACGTCTCAATCCTCCTCCACTCAACAACTTTCAAAACCATCCCTGCAGCCTAGACCTCACTTACCACCAACCAGCAAACCCCAACCAGTTAACCAATCATCACAGCAAATTGCACCCAAAACAGCTCCAAGGGCAATGGAAAGATGGACCATGTCCaatcagagagaagaaaagagttCTGTGAGCCAGTCTACACACAGAGATGAATTATTGGATTCTAAGGGACAATCAAAACATGGAGTCAGAAGTAACACCCAAACAGAGCCTGATCAGCAGCCTCCATCAGACAAAGCTCAGCCGACTTGGATGGAACTTGCCAAGAGAAAGTCTCTCGCCTGGAGCGACAAGACCTTAGATTCTatgaatttttaattatgtaaatagGTTCAAAATGCACATGGACAATTGACAGAATACTTAGTTTTTGTAAATACAGACTGGTTAAATAAGCTAGATGCGCAGGATTACCGTGCCTTGTCAAATAGTGAAagctaaaatactgaaaatctAGTCAAaacagaattatatatatatata

Function

NR:

description
PREDICTED: uncharacterized protein KIAA1211-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932228.2 False 2959 mRNA 0.45 11 8572271 8590418
XM_026932229.2 True 3085 mRNA 0.45 11 8572271 8579925

Neighbor

gene id symbol gene type direction distance location
LOC113537579 NA coding downstream 3236 8556011 ~ 8569035 (-)
LOC113537664 zc3h12c,LOC108259022 coding downstream 17963 8529482 ~ 8554308 (-)
LOC113537751 vangl1,LOC107588836,LOC107552384,LOC107739810 coding downstream 156330 8355647 ~ 8415941 (-)
poglut1 poglut1 coding downstream 235403 8329650 ~ 8336868 (-)
gk gk,LOC108259045,LOC107700103,LOC107667651,LOC107742635 coding downstream 252428 8294879 ~ 8319843 (-)
col17a1a col17a1 coding upstream 50094 8640512 ~ 8669319 (-)
LOC113537765 NA coding upstream 104119 8694537 ~ 8697313 (-)
pdcd11 pdcd11,LOC104950700 coding upstream 119965 8710383 ~ 8740417 (-)
taf5 taf5,LOC107583167,LOC107684290,LOC107676012 coding upstream 153034 8743452 ~ 8752250 (-)
msx1b LOC108258334 coding upstream 205949 8796367 ~ 8798248 (-)
G372522 NA non-coding downstream 128206 8428604 ~ 8444065 (-)
G372471 NA non-coding downstream 368047 8202768 ~ 8204224 (-)
G372307 NA non-coding downstream 555883 8016105 ~ 8016388 (-)
G372300 NA non-coding downstream 583073 7988950 ~ 7989198 (-)
G372288 NA non-coding downstream 595280 7976777 ~ 7976991 (-)
G372742 NA non-coding upstream 184614 8775032 ~ 8788141 (-)
LOC113537261 NA non-coding upstream 373167 8963585 ~ 8965621 (-)
G373288 NA non-coding upstream 1169323 9759741 ~ 9759949 (-)
G373292 neurl1,LOC107676877,LOC107746052 non-coding upstream 1173201 9763619 ~ 9764526 (-)
G373296 neurl1,LOC103384027 non-coding upstream 1176621 9767039 ~ 9767482 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 139833 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 243245 8320868 ~ 8329026 (-)
LOC113537489 NA other downstream 304999 8261435 ~ 8267272 (-)
cars2 cars2 other downstream 487732 8069402 ~ 8084539 (-)
fam155a LOC108258331 other downstream 579175 7912210 ~ 7993096 (-)
tsga10 LOC108258346 other upstream 989 8591407 ~ 8610841 (-)
LOC117596103 LOC102201964,LOC102304430 other upstream 1288425 9878843 ~ 9918779 (-)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 1831734 10422152 ~ 10435367 (-)
lipt1 lipt1 other upstream 2280806 10871224 ~ 10872556 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 3488473 12078891 ~ 12084049 (-)

Expression


Co-expression Network