taf5 (taf5,LOC107583167,LOC107684290,LOC107676012)


Basic Information

Item Value
gene id taf5
gene name taf5,LOC107583167,LOC107684290,LOC107676012
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8743452 ~ 8752250 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932248.2
CACGTATTCGACGTCGCCCGAACGTCCTTTCATTCGCCTGCGTCATCACGTCGATGTTGTGTTGCGCGTCGGGGCAAAATGGCGGCTGTGCATGATGGACCGAGCGACGTCGAGAGcgagaaagaaacaaaacccGACATTCTGAGCGAGGAGTCGGCAGCAAACCTGCCCGGAATAACGTTGTCCTCGTCGCCGCTCGCACCTCCTTCTGCCGTAGCGCCCAAAGCAGAGGAGCAGCAGAAGACTTTACTCGCCGTGCTGCAGTTCCTGAAGAGGAACAACCTAACGGAGTCGGTGGATATCCTGCGGCGCGAGGCAAGAATACAGGACGAGCTAGAGGAGGCGCGCGGGACAGACGCTGCAGCACCGGGGCTGAATTCCGGCTCCGGAGACAACAGCTCACTCCTCAGCCGTGTGTCTTCCCAAAGCGGCGCTCCGGCTAAAGCAGGTGGAGAGGACCAGCCGGATGTCAGCGTTGTCCTCTCGGCGTACAGCCAGCAGGGGGATCCTTCATTGTATCAGGTTTACTACAGCGGGCTGAAGAAGTTCATCGAGTCGGTACTGGACTGCCACAGGGCCGAGCTGTCGCAGCTCTTCTACCCGCTCTTTGTTCACATGTACCTGGAGCTGGTTTACAACAACCATGAAAACGAAGCAAAGGCATTCTTTGAGAAGTTCAGCGGTGACCAGGAATGCTACTACCAGGACGACCTGCGTGTGCTCTCAGGCCTCACCAAGAAGGAGCACATGAAGGGTAACGAGACGCTGCTGGATTTCCGCACAAGTCGCTTCGTGCTGCGCATTTCGCGCGACTCCTACCAGCTGCTGAAGCGCCACCTTCAGGAGCGCCAGAACAACCAGATCTGGAACATCATCCAGGAGCACCTCTACATCGACATCTTCGATGGCATGCCACGGAGCAAGAGTCAGATCGACAGCACGTCCGGCAGCCTGGCTGGAGAGGCCCGCCGAGAGGCCAACAAAGCCAAGGTGTTCTACGGATTGCTGAAGGAGCCCGAGATCGAGGTCCCTCTCGacgatgaagatgaagaggCTGAGAATGAAGAGGGCAAACCCAAGAAGAAGAAACCTAAGAAGGACAGCATGGGTTCAAAAAGCAAGAAGCAGGACCCCAATGCACCGCAACAAAACAGGATTCCTCTACCAGAACTAAAGGACTCTGATAAACTGGACAAAATCATGTATATGAAAGAGGCCACGAAGAGGCTTCGTCTAGGCCCAGAAATACTGCCCTCGATATGCTTCTACACGTTCCTCAACGCTTACCAGGGTCTGACAGCAGTGGACATTACAGACGACTCAAGTCTGATAGCAGGAGGCTTCGCCGACTCCACAGTGCGTGTCTGGAGCGTCACACCCAAGAAACTCCGCAAGGTCAAATCCGCAGCAGatcTCAGTCTCATAGACAAGGAGTCAGATGATGTGCTGGAAAGGATCATGGACGAGAAAACAGCCAGCGAGTCCAAGATCCTGTACGGCCACAGCGGGCCAGTGTACGCCGTCAGCTTCAGTCCAGACAGGAATTATCTGTTGTCGAGTTCAGAAGATGGCACCATCAGGCTGTGGAGCTTGCAGACATTTACCTGTCTGGTAGCGTATAAGGGACACAATTACCCAGTGTGGGACACTCAGTTCTCTGCACATGGATACTATTTTGTGTCTGGAGGACATGACAGAGTGGCACGGCTGTGGGCCACTGACCACCACCAGCCGCTGCGCATATTCGCCGGACATCTCTCTGACGTCACCTGCACCTGCTTCCACCCGAACTCCAACTACATGGCCACAGGCTCAGCCGATCGCACCGTGCGCCTCTGGGACGTCCTGAACGGCAACTGCGTCCGCATTTTTACAGGACACAAGGGACCAATCCACTCTTTGGCATTCTCGCCCAACGGCAAGTACCTGGCGTCTGGCTCAACCGATGGCAGAGTTCTGCTGTGGGACATCGGCCACGGACTCATGATTGGCGAACTGAAGGGTCACAGCGACACCATCTATGCACTCAAGTTcagcagagatggagagatccTCGCTTCAGGCTCCATGGACAACACGGTCCGGCTGTGGGACGCCATCAAAGCCGTCGACGACGTGGAAACGGACGATTTCACAGCAGCCACGGGTCACATTCACTTACCCGACAACTCTCAGGAGTTATTACTGGGGACGTACCTGACCAAATCCACCGCCGTCATCCACGTCCACTTCACCAGACGCAACCTGCTACTGGCCGCCGGTGCATACATCTCCCAGTGATCACAGCACAGCTTCCATCACCAAATCATGCAGCACTGGCCCAGGAACAGCTCAAACAATCCGTGTTGCTCACCTCGTTTTTTAATAGGGTATTAAAGTGAAGCAACTGAAACTTATGGACTTAACCATGTGTGTATTTCCATCAGTTCTACACAGACACTGATACTAAACGTTGATTACTTTACACATCACTGCCATACAGGGTTGTGGCCCCAGCCTCCTGAACTGTACAGTCTTTTataattgtgtaaataaaacagCTTTTCTATGTA
>XM_026932249.2
CACGTATTCGACGTCGCCCGAACGTCCTTTCATTCGCCTGCGTCATCACGTCGATGTTGTGTTGCGCGTCGGGGCAAAATGGCGGCTGTGCATGATGGACCGAGCGACGTCGAGAGcgagaaagaaacaaaacccGACATTCTGAGCGAGGAGTCGGCAGCAAACCTGCCCGGAATAACGTTGTCCTCGTCGCCGCTCGCACCTCCTTCTGCCGTAGCGCCCAAAGCAGAGGAGCAGCAGAAGACTTTACTCGCCGTGCTGCAGTTCCTGAAGAGGAACAACCTAACGGAGTCGGTGGATATCCTGCGGCGCGAGGCAAGAATACAGGACGAGCTAGAGGAGGCGCGCGGGACAGACGCTGCAGCACCGGGGCTGAATTCCGGCTCCGGAGACAACAGCTCACTCCTCAGCCGTGTGTCTTCCCAAAGCGGCGCTCCGGCTAAAGGTGGAGAGGACCAGCCGGATGTCAGCGTTGTCCTCTCGGCGTACAGCCAGCAGGGGGATCCTTCATTGTATCAGGTTTACTACAGCGGGCTGAAGAAGTTCATCGAGTCGGTACTGGACTGCCACAGGGCCGAGCTGTCGCAGCTCTTCTACCCGCTCTTTGTTCACATGTACCTGGAGCTGGTTTACAACAACCATGAAAACGAAGCAAAGGCATTCTTTGAGAAGTTCAGCGGTGACCAGGAATGCTACTACCAGGACGACCTGCGTGTGCTCTCAGGCCTCACCAAGAAGGAGCACATGAAGGGTAACGAGACGCTGCTGGATTTCCGCACAAGTCGCTTCGTGCTGCGCATTTCGCGCGACTCCTACCAGCTGCTGAAGCGCCACCTTCAGGAGCGCCAGAACAACCAGATCTGGAACATCATCCAGGAGCACCTCTACATCGACATCTTCGATGGCATGCCACGGAGCAAGAGTCAGATCGACAGCACGTCCGGCAGCCTGGCTGGAGAGGCCCGCCGAGAGGCCAACAAAGCCAAGGTGTTCTACGGATTGCTGAAGGAGCCCGAGATCGAGGTCCCTCTCGacgatgaagatgaagaggCTGAGAATGAAGAGGGCAAACCCAAGAAGAAGAAACCTAAGAAGGACAGCATGGGTTCAAAAAGCAAGAAGCAGGACCCCAATGCACCGCAACAAAACAGGATTCCTCTACCAGAACTAAAGGACTCTGATAAACTGGACAAAATCATGTATATGAAAGAGGCCACGAAGAGGCTTCGTCTAGGCCCAGAAATACTGCCCTCGATATGCTTCTACACGTTCCTCAACGCTTACCAGGGTCTGACAGCAGTGGACATTACAGACGACTCAAGTCTGATAGCAGGAGGCTTCGCCGACTCCACAGTGCGTGTCTGGAGCGTCACACCCAAGAAACTCCGCAAGGTCAAATCCGCAGCAGatcTCAGTCTCATAGACAAGGAGTCAGATGATGTGCTGGAAAGGATCATGGACGAGAAAACAGCCAGCGAGTCCAAGATCCTGTACGGCCACAGCGGGCCAGTGTACGCCGTCAGCTTCAGTCCAGACAGGAATTATCTGTTGTCGAGTTCAGAAGATGGCACCATCAGGCTGTGGAGCTTGCAGACATTTACCTGTCTGGTAGCGTATAAGGGACACAATTACCCAGTGTGGGACACTCAGTTCTCTGCACATGGATACTATTTTGTGTCTGGAGGACATGACAGAGTGGCACGGCTGTGGGCCACTGACCACCACCAGCCGCTGCGCATATTCGCCGGACATCTCTCTGACGTCACCTGCACCTGCTTCCACCCGAACTCCAACTACATGGCCACAGGCTCAGCCGATCGCACCGTGCGCCTCTGGGACGTCCTGAACGGCAACTGCGTCCGCATTTTTACAGGACACAAGGGACCAATCCACTCTTTGGCATTCTCGCCCAACGGCAAGTACCTGGCGTCTGGCTCAACCGATGGCAGAGTTCTGCTGTGGGACATCGGCCACGGACTCATGATTGGCGAACTGAAGGGTCACAGCGACACCATCTATGCACTCAAGTTcagcagagatggagagatccTCGCTTCAGGCTCCATGGACAACACGGTCCGGCTGTGGGACGCCATCAAAGCCGTCGACGACGTGGAAACGGACGATTTCACAGCAGCCACGGGTCACATTCACTTACCCGACAACTCTCAGGAGTTATTACTGGGGACGTACCTGACCAAATCCACCGCCGTCATCCACGTCCACTTCACCAGACGCAACCTGCTACTGGCCGCCGGTGCATACATCTCCCAGTGATCACAGCACAGCTTCCATCACCAAATCATGCAGCACTGGCCCAGGAACAGCTCAAACAATCCGTGTTGCTCACCTCGTTTTTTAATAGGGTATTAAAGTGAAGCAACTGAAACTTATGGACTTAACCATGTGTGTATTTCCATCAGTTCTACACAGACACTGATACTAAACGTTGATTACTTTACACATCACTGCCATACAGGGTTGTGGCCCCAGCCTCCTGAACTGTACAGTCTTTTataattgtgtaaataaaacagCTTTTCTATGTA

Function

symbol description
taf5 Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in transcription initiation from RNA polymerase II promoter. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF5 (TATA-box binding protein associated factor 5).

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 5

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K03130 TAF5; transcription initiation factor TFIID subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932248.2 True 2552 mRNA 0.54 11 8743452 8752250
XM_026932249.2 False 2549 mRNA 0.54 11 8743452 8752250

Neighbor

gene id symbol gene type direction distance location
pdcd11 pdcd11,LOC104950700 coding downstream 3035 8710383 ~ 8740417 (-)
LOC113537765 NA coding downstream 46139 8694537 ~ 8697313 (-)
col17a1a col17a1 coding downstream 74133 8640512 ~ 8669319 (-)
cracdlb LOC108259003 coding downstream 153034 8572271 ~ 8590418 (-)
LOC113537579 NA coding downstream 174417 8556011 ~ 8569035 (-)
msx1b LOC108258334 coding upstream 44117 8796367 ~ 8798248 (-)
caly caly,LOC108258305,LOC108434710,LOC103039857,LOC105891014 coding upstream 83237 8835487 ~ 8848164 (-)
sorcs3 LOC108258285,LOC108443686,LOC107746061,LOC107566138,LOC107684317,LOC105891017,LOC103472494,LOC106951909 coding upstream 554483 9306733 ~ 9547257 (-)
cfap58 cfap58 coding upstream 844764 9597014 ~ 9705826 (-)
sh3pxd2aa sh3pxd2a coding upstream 1054922 9807172 ~ 9823708 (-)
G372522 NA non-coding downstream 299387 8428604 ~ 8444065 (-)
G372471 NA non-coding downstream 539228 8202768 ~ 8204224 (-)
G372307 NA non-coding downstream 727064 8016105 ~ 8016388 (-)
G372300 NA non-coding downstream 754254 7988950 ~ 7989198 (-)
G372288 NA non-coding downstream 766461 7976777 ~ 7976991 (-)
G372742 NA non-coding upstream 22782 8775032 ~ 8788141 (-)
LOC113537261 NA non-coding upstream 211335 8963585 ~ 8965621 (-)
G373288 NA non-coding upstream 1007491 9759741 ~ 9759949 (-)
G373292 neurl1,LOC107676877,LOC107746052 non-coding upstream 1011369 9763619 ~ 9764526 (-)
G373296 neurl1,LOC103384027 non-coding upstream 1014789 9767039 ~ 9767482 (-)
tsga10 LOC108258346 other downstream 132611 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 311014 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 414426 8320868 ~ 8329026 (-)
LOC113537489 NA other downstream 476180 8261435 ~ 8267272 (-)
cars2 cars2 other downstream 658913 8069402 ~ 8084539 (-)
LOC117596103 LOC102201964,LOC102304430 other upstream 1126593 9878843 ~ 9918779 (-)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 1669902 10422152 ~ 10435367 (-)
lipt1 lipt1 other upstream 2118974 10871224 ~ 10872556 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 3326641 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 3872801 12625051 ~ 12630403 (-)

Expression


Co-expression Network