cbsa (cbs,LOC107742639,LOC107654262,LOC107667662)


Basic Information

Item Value
gene id cbsa
gene name cbs,LOC107742639,LOC107654262,LOC107667662
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8132987 ~ 8148533 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932402.2
TGGGCAAAACGTACAAATTTGTGATGCAGTTTGAACGTTTGAATAGGTGCCAAACATTTTCAATTAACAAACACTTTTAGGGTGAGGTTTATAAAATAggcaaaacattttttgtggAACTTTGCTTCCGGTTTGAGTGTGACGTAATCGCCGGGCCCCTTATCCTTTAAATGTGAAGACTCGCGCTTACTTTCTCATTCTGGTCAGATCTGAGCGACTGGGGACTTTCTTACCACTTTAACTCACAATCTCTGAACTGCATCTGTAAAGTGAATCATGCCTTCAGTGCCTTCCACTAAAGAGAATGATCTCTCCAAACCTGTCTGCCCCTTTGCTGGCAAAAagaacaacaccaccaccagcatTACTGGTGGACTGTTCCAGAGTGAAAGCACTGAGACTGACCTCGAGAAATGGATCCGTCCTGACCTTCCCAGCAAGTGCACATGGAGCCTGGGAGCACCACTTACTGATTCCCCACACTTACATGCACTCAGgACAAATGATCCAAGCATCTTGCCCAACATCCTCAGAAAAATTGGGGACACGCCAATGGTACGCATCAACAAGATCAACAAGACTTACGGACTCAAGTGTGAGCTGTtggcaAAGTGTGAGTTCTTCAATGCCGGTGGCAGTGTTAAAGATAGGATCAGTCTGCGCATGGTTGAGGATGCAGAGAGAGCAGGCATCCTTAAACCTGGAGATACCATCATAGAGCCTACTTCTGGAAACACTGGTATTGGCCTAGCTCTGGCTGCTGCTGTGAAGGGCTACCGCTGCATCATCGTCATGCCTGAAAAAATGAGTATGGAAAAGGTGGACGTGTTGAGAGCTCTGGGTGCGGAGATAGTCCGCACACCCACCAGCGCCCGTTTTGATTCCCCGGAGTCCCATGTGGGCGTGGCTTGGCGCCTGAAGAATGAAATCCCCAATTCTCACATCTTGGACCAGTACCGCAACCCCAGCAACCCCCTGGCTCACTATGACACCACAGCTGAGGAAATCCTAGAGCAGTGCGATGGAAAAGTGGACATGCTGGTAGCAGGAGCTGGCACTGGGGGCACCATCACTGGTGTAGCCCGCAAACTGAAGGAGAAATGCCCCAACATTAAGATTGTTGCTGTGGACCCAGAGGGATCCATTCTGGCTGAACCAGAGGAGCTAAACCAGACTGATAAGACTCAGTACGAGGTGGAGGGCATTGGATATGACTTCATTCCCACTGTGCTTGACAGATCCGTGGTAGACAGCTGGTACAAGTCCAATGATGAGGAGTCATTCGCTATGGCTCGTATGCTTATAAGAGACGAGGGCCTGCTTTGTGGTGGCAGTTCAGGCACAGCCATGGCAGCAGCCGTGAAGATGGCTAAAGAGCTGAAGGAAGGGCAGCGCTGTGTGGTCATTCTTCCTGATTCCATCCGCAACTACATgtCCAAGTTCCTAAGTGACAACTGGATGTTCCAAAAGGGTTTCCTCACTGCAGAAGACTTCATGGTTAGCAAGCCCTGgTGGTGGAATCTCAGGCTACAGAGTTTGAACCTTTCGGCACCTCTCACTGTTTTGCCCACAGTCAGCTGTCAAAAAACCATCAAGATTCTGAAAGAAAAGGCGTTTGACCAAGCGCCAGTTGTAGATGAGGCTGGGGTCATTCTTGGTATGGTCACCCTGGGGAACATGTTAGCCTCTCTGCTAGCTGGAAAGATCAAACCATCTGATCCCGTCAGCAAAGTGCTCTACAAACAGTTCAAACAGATTCGTTTAACTGATAACCTCGGAAAACTTTCTCGGATCCTGGAGACAGATCACTTCGCCCTGGTGGTGCATGAGCAGATTCAGTATTTGACAGACGGGTCCACCGTAATGAAGCACATGGTGTTTGGAGTAGTGACGGCCATTGACCTGCTGAACTTCGTTACAGCTCGCGAGAAACGTGAGCGATCCATATCTGAATGCACAGATGAGCTGTGAAAAATGAGTATCGGCCATAGCTCATCTCTAAGAGTTTTGGGGCATTAgtggaaaatattttatgaacTGAGGCTGTTCAAACATTCTGCAATGGCGGTTTTGCTTCTTGTGTAATTTGACAGTTTTGATCTActaaaagatttaaaagaacTAAAACTGAGGGAGTCAAGGTAAATTCCAATTTTGGTTTGaagttaaaatttaattattgcTCACATGTacaattaaaacacatttgaacatttttagaTAAACTAAATTGAGTTCATTGtcctaaatcttttttttttttttttaagaaagattGTCTTTTACTtctttgtgtgttgtattgCATTGTGTGTTGTATCATGAACGCTATTAAATATTACTGTTTACAATAAGTGTACAATGTTGTGTAAGAGAATATAAGAGCTCTTAAGCTAAAAGTTTTTTGCTCTGGATAGGTGCTTTCATGCAGAATCTTATTGTCCCATCAATAAAATTTCTTAATTTTCcagataa

Function

symbol description
cbs Enables several functions, including S-adenosyl-L-methionine binding activity; cystathionine beta-synthase activity; and heme binding activity. Involved in DNA protection; alpha-amino acid metabolic process; and hydrogen sulfide biosynthetic process. Located in cytoplasm and nucleus. Implicated in coronary artery disease; homocystinuria; hyperhomocysteinemia; malaria; and neural tube defect.

NR:

description
PREDICTED: cystathionine beta-synthase-like

GO: NA

KEGG:

id description
K01697 CBS; cystathionine beta-synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932402.2 True 2475 mRNA 0.45 15 8132987 8148533

Neighbor

gene id symbol gene type direction distance location
cryaa cryaa,LOC106939151 coding downstream 1804 8127561 ~ 8131183 (-)
ankrd10a ankrd10 coding downstream 27635 8091366 ~ 8105352 (-)
LOC113537306 ube2a,ube2al,LOC108259060,LOC103029486,LOC103021436,LOC107552373,LOC105934920,LOC107588833 coding downstream 42890 8087780 ~ 8090097 (-)
LOC113537312 LOC108259043 coding downstream 66536 8062221 ~ 8066451 (-)
irs2a LOC108258957,LOC108434672 coding downstream 78442 8042485 ~ 8054545 (-)
u2af1 u2af1,LOC102219527,LOC105917412,LOC103389252,LOC101158751 coding upstream 1607 8150140 ~ 8157560 (-)
rab9a rab9a,LOC108434684,LOC105902834,LOC107654259,LOC107667663 coding upstream 64370 8212903 ~ 8218195 (-)
LOC113537479 tceanc coding upstream 70106 8218639 ~ 8222543 (-)
zgc:64002 LOC108258972 coding upstream 140628 8289161 ~ 8291351 (-)
gk gk,LOC108259045,LOC107700103,LOC107667651,LOC107742635 coding upstream 146346 8294879 ~ 8319843 (-)
G372307 NA non-coding downstream 116599 8016105 ~ 8016388 (-)
G372300 NA non-coding downstream 143789 7988950 ~ 7989198 (-)
G372288 NA non-coding downstream 155996 7976777 ~ 7976991 (-)
G372168 NA non-coding downstream 223435 7909124 ~ 7909552 (-)
G372132 NA non-coding downstream 351782 7780062 ~ 7781205 (-)
G372471 NA non-coding upstream 54235 8202768 ~ 8204224 (-)
G372522 NA non-coding upstream 280071 8428604 ~ 8444065 (-)
G372742 NA non-coding upstream 626499 8775032 ~ 8788141 (-)
LOC113537261 NA non-coding upstream 815052 8963585 ~ 8965621 (-)
G373288 NA non-coding upstream 1611208 9759741 ~ 9759949 (-)
cars2 cars2 other downstream 48448 8069402 ~ 8084539 (-)
fam155a LOC108258331 other downstream 139891 7912210 ~ 7993096 (-)
G372086 LOC108258915 other downstream 408192 7718263 ~ 7724795 (-)
LOC113537388 arhgap6 other downstream 654478 7357271 ~ 7478509 (-)
LOC113537271 LOC108258282 other downstream 1064456 7058835 ~ 7068531 (-)
LOC113537489 NA other upstream 112902 8261435 ~ 8267272 (-)
timmdc1 timmdc1 other upstream 172335 8320868 ~ 8329026 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other upstream 281029 8429562 ~ 8432438 (-)
tsga10 LOC108258346 other upstream 442874 8591407 ~ 8610841 (-)
LOC117596103 LOC102201964,LOC102304430 other upstream 1730310 9878843 ~ 9918779 (-)

Expression


Co-expression Network