fgf8b (fgf8,fgf8b,LOC108258517,LOC107699081,LOC107568785,LOC107602739,LOC107738466,LOC107704317)


Basic Information

Item Value
gene id fgf8b
gene name fgf8,fgf8b,LOC108258517,LOC107699081,LOC107568785,LOC107602739,LOC107738466,LOC107704317
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 12585726 ~ 12592448 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300265.1
AATGCAGAGAGCAGGCTGGTCCGAGCCGCACTTCTCTGCGGGATGAAAACCCGACTCCTGCGCATCATTTTACTTTAAATTGAAAGCGGCTGCACGCGgatctttgtttttaaaaattcagaaatgactttGACATGTATTTATTCAGTTCTTGGAGATTAGCTGAATTATAGCTGAATTACATATTAGCTTTGCCATgagcaaataaaaacaactgaaaaatgtACACGTTACTGCGCGCTTATTTTACATGCAAACGCGTCTTCAGGATAGCGGATAAGATCCCTTCCGTTTTTTCCAGTTTGGTATTTTCCCTAGTTGTTAATACGAATCAGATCACTGATTCACAGTGTCTGCGGTTTGGGGTGCAGGTAGTAATCCGTCTGAATGCTTGAATGAATCcgattgaatttttttttttttttttggattgtcCAGTTATATACGGTTGAAGAAGATTTGTTTCTGAGGGAATTATGGATCTCCCTCAATAGACTGTAAAATTCTGAGCTGTCAATTCAACTTAATTTGTAGTTGATCAGCAACGGGATATATTTTTGGAGGACATTTCCATCGGGACTAACTCTGTCCCCTCAGAAACAGGGAACTCATGAAGGATTTAAATCAGGAGCCAGACGCAAAAGTTTGCAGAATCTCACAATGAAGCTGAAATCTTCTAAATGGGGTTACCTgttaatCCAATTCATGACGCTAATCTTTTACACACAGACGGCAGCAGGCCTGCACTCCGTGTCCGTGCCGAACTTCAAGCAGCACGTGACCGAGCACAGCCGCTTGTCGGACCGCACGAGCCGCCGGTTGACGCGCACCTACCAGCTGTACAGCCGCACGAGCGGTAGGCACGTGCAGGTGTTGAGCAATAAGAGAGTTGTGGCTAACGGCGAGGACGGAGACGTGCACGCCAAACTGATTGTGGAGACCGATACGTTTGGGAGTCGGATTCGTATCCGCGGAGCTAAGACAGGCTTCTATATATGCATGAACAAGAAAGGAAAGCTGATTGGACGGAGGAAGGGTCATGGCAAGGACTGCATTTTCACTGAGATCGTTCTGGAGAACAACTACACAGCACTGCAGAATGCCAAGTACAAAGGCTGGTACATGGCATTTACACGTAAAGGCCGTCCACGGAAGGCGACACGCACACAACAGCACCAGAGAGAAGCTCATTTCATGAAACGCTTTCCACGGGGACACCTGCTCACTGAGCACAAGCCCTTCGATATTGTCCCTTATCAGCTCAACAAGAGGACTAAACACAGCCATCGGCCTAGTGTCAACTAAGGAtgcccactgacacaca

Function

symbol description
fgf8b Predicted to enable growth factor activity; type 1 fibroblast growth factor receptor binding activity; and type 2 fibroblast growth factor receptor binding activity. Predicted to be involved in several processes, including fibroblast growth factor receptor signaling pathway; heart development; and positive regulation of macromolecule metabolic process. Predicted to act upstream of or within nervous system development and positive regulation of cell division. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Is expressed in several structures, including anterior macula; brain; midbrain hindbrain boundary neural rod; optic vesicle; and otic vesicle. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 6 with or without anosmia and prostate carcinoma in situ. Orthologous to human FGF8 (fibroblast growth factor 8).
fgf8 Enables growth factor activity; type 1 fibroblast growth factor receptor binding activity; and type 2 fibroblast growth factor receptor binding activity. Involved in several processes, including animal organ development; dopaminergic neuron differentiation; and negative regulation of cardiac muscle tissue development. Acts upstream of or within fibroblast growth factor receptor signaling pathway. Located in extracellular space. Implicated in hypogonadotropic hypogonadism 6 with or without anosmia and prostate carcinoma in situ. Biomarker of breast cancer; choriocarcinoma; embryonal carcinoma; endodermal sinus tumor; and prostatic hypertrophy.

NR:

description
fibroblast growth factor 8b

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0051781 positive regulation of cell division biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0007399 nervous system development biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300265.1 True 1324 mRNA 0.46 5 12585726 12592448

Neighbor

gene id symbol gene type direction distance location
poll poll coding downstream 7333 12571039 ~ 12578393 (-)
wbp1lb LOC108259041 coding downstream 15428 12563004 ~ 12570298 (-)
as3mt as3mt coding downstream 39303 12536497 ~ 12546423 (-)
cnnm2b cnnm2b,LOC108258315,LOC108435981,LOC107568787,LOC107699104,LOC107708677 coding downstream 50495 12502681 ~ 12535231 (-)
inab ina coding downstream 114115 12465957 ~ 12471611 (-)
slc2a15b LOC108258984,LOC108435958,LOC107708658,LOC107704318,LOC107602731,LOC107699075 coding upstream 16605 12609053 ~ 12622350 (-)
LOC113537226 NA coding upstream 51491 12643939 ~ 12659493 (-)
pnpla4 pnpla4 coding upstream 151813 12744261 ~ 12751839 (-)
cd99 NA coding upstream 728815 13321263 ~ 13348834 (-)
trnar-ucu_15 NA coding upstream 731634 13324082 ~ 13324173 (-)
G375028 NA non-coding downstream 129 12585160 ~ 12585597 (-)
G375027 NA non-coding downstream 1067 12584445 ~ 12584659 (-)
G375018 NA non-coding downstream 24901 12560601 ~ 12560825 (-)
G375001 NA non-coding downstream 58907 12526620 ~ 12526819 (-)
G374963 NA non-coding downstream 144187 12441321 ~ 12441539 (-)
G375097 NA non-coding upstream 103567 12696015 ~ 12697218 (-)
G375119 NA non-coding upstream 148977 12741425 ~ 12741652 (-)
G375121 NA non-coding upstream 149872 12742320 ~ 12742520 (-)
G375141 NA non-coding upstream 240428 12832876 ~ 12833354 (-)
G375329 NA non-coding upstream 675434 13267882 ~ 13271621 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 501677 12078891 ~ 12084049 (-)
lipt1 lipt1 other downstream 1713170 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 2150359 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 2666947 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 3974885 8591407 ~ 8610841 (-)
LOC113537246 NA other upstream 32603 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 715265 13307713 ~ 13320530 (-)
G375428 NA other upstream 846771 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 1379888 13972336 ~ 13980251 (-)
pibf1 pibf1 other upstream 1390297 13982745 ~ 14016151 (-)

Expression


Co-expression Network