rgs11 (rgs11)


Basic Information

Item Value
gene id rgs11
gene name rgs11
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 262153 ~ 277683 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034300280.1
ATGACCATCAGCACACTGAGAGGAGGAGAGCAGCGCGCGCACATGGAGTGTTTCaccaagatggagAGGATAATCGTGTCCATGCAGGATCCGGATATGGGAATGAAGATGAGAAACCAGAGACTGCTCATTACACTCATTCCTCACGCCATGACCGGAAGTGATattgttgaatggctgataaaGAAATATAACATCACTGAAGAAGaggcaTTACATATCGGGAACTTCTTGGTGAAGTACGGATATATTTACCCGTTAAAGGAACCTCGGAACCTGAGTTTGAGACAAGACGAGTCGCCTTATCGCTTTCAGactccATATTACTGGACGTCGAGTCGCTGGCCTGCAACAGAGCTGGATTACGCTATTTATTTGGCCAAGAAGAACATTCGCAAGCAAGGAGAACTGATAGAGTATGAAAAGGAGTGTTATAATGCTCTGCATAAGAGAATCAATCACACCTGGGACTTTGTGGTGATGCAGGCGAGAGAGCAgctcaggGCATCGAAACACCGTCGGAAATCTGATCGCATCGTGCTGGAGTGTCAAGAGCAAGCGTACTGGCTGGTCAACAGACCTCctCCAGGTGCTATGGATATTTTGGAGTTTGGTCCTGAGAGACGGAACATCACAAACACACGAGTGCTGCTGAACACTGAATTCTACAGGAGAGAGATTGAGCAAATCAGGAAAAACCTGGGAAGAAGGAACCGAATGAAGTCCTCTGTTTGTCTGGAAAGttttGTTAAGTACAGTGCCCAGTACCTGAACCATGATCCCATAATGCAAGGCTGCCTTCCCAGCAACCCCTGGATCACAGATGACACCATGTTGTGGAATATCAACTCAGACatGGTTGCCATGCCGACAAAACTCCGTGTGGAGCGCTGGAGCTTTAGCTTCATGGAGCTGCTGAGTGACCCGATGGGCAGAAAAGAATTCCTCACTTACCTGGAGAAAGAGTTCagtgCGGAGAACCTGTGTTTCTGGCAGGCGTGTGAGGACCTGCGACACGGAGAAACTTCCAAAATCCCAGAGAAAGTGGACGAGGTTTACAACCAGTACCTCGCTCCCGGAGCTGCACACTCGGTCAACATCGACGGTAAGACGATGGCTGTCACTCTGGAGGGAATGAAGAACCCAGATCGCTTCGTCTTCGACAGCGCACAGATGCACATCTATGTCCTCATGAAGAAGgaCTCGTACACTCGCTACTTAAAGTCTGAACAGTACAAGAGCTTGCTAGCGAAAGCTGTAGTACCACAGGAAACAAAGAAGAGtGTGTTCCCGTGTATGCGTCGTCAGCGAAATTCAAGCTACGCCCCATCTCTGATACAAACAGGAGATGAAAATGGAAAGAACAACGCTGGAACTGCTTCACAgatttaatcacacacacacacacacacacacacacacacacacacacacacacacacacacatatatattacagatGCAATAAGTTTAAAGCCTGTACTATAACCCATATGCTCCAATGTGCAGAACCTGAACCGTACAGAACTGAAAGTGAGTTCACACCTGCAcctgtttcttttcattattataatgtttattcAGCTGATTCAGCAGGGTTGCCATGGATACTCAGAAATGAGCCTTCTGTGCATTTTATAAGTTACGAGTTATAGTGTAGTGAATTCAGATGTTTGGACCTTGGATTGAAAATCTTAATGcactagaacacacacacacacacacacacacacacacacacacacacacacactcaggctgaatttattgaatatttacaCCATGTAGGTGCCTGAAATGTAAAAGTCCACAATAAACTACAGATTATTTAGTCACATCATATCGAATTAATTCTAATTAAAATATAGCGATACTTAATAATATGcattaaatcacattaaacTGCTATTTTAACCTTCTAATCTGTTtactatttttttccacattgtttcacaagttaaatattatatattattcatcactgtttatttttttcattgtatttcTCTGTATTGTGCATCGTTTAGTTCGTGCTAAATACATGAATAAGAGTTTTTATCTGATCCTTAAAGCACGCAGAATTTCACCAAACCTGACTCTTCATAAAGCAGGAACTGAAGTGTGTGAGACTCCGAGTGCcgtgtttttttattccacatttTTATGCCACTTCACCCACATCAACACCGATACGCTCATTTCTATCTTGGAAAATAAGAAAcggagagaaatgagagaaagaaaataaaattgactTGTGACCATTTTTAC

Function

symbol description
rgs11 Predicted to act upstream of or within G protein-coupled receptor signaling pathway; intracellular signal transduction; and negative regulation of signal transduction. Orthologous to human RGS11 (regulator of G protein signaling 11).

NR:

description
PREDICTED: regulator of G-protein signaling 11

GO: NA

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034300280.1 True 2271 mRNA 0.43 17 262153 277683

Neighbor

gene id symbol gene type direction distance location
percc1 LOC108258685 coding downstream 17979 234899 ~ 244174 (-)
pdia2 LOC108258683 coding downstream 27177 228448 ~ 234976 (-)
rnf175 rnf175,LOC107665971,LOC107692639,LOC107714147 coding downstream 100172 154481 ~ 161981 (-)
fgb fgb,LOC107758871 coding downstream 131792 125530 ~ 130361 (-)
LOC113524573 lratb,LOC108258974,LOC108439370,LOC107758869,LOC107590749,LOC106608435 coding downstream 148413 92135 ~ 113740 (-)
elfn1b elfn1b,LOC108258545,LOC108439159,LOC107722936,LOC107590768,LOC107702506,LOC107714143 coding upstream 74770 352453 ~ 408289 (-)
uncx4.1 LOC108258667 coding upstream 240921 518604 ~ 525065 (-)
chtf18 chtf18,LOC107725360 coding upstream 266575 544258 ~ 558212 (-)
plk1 plk1,LOC107722962,LOC107702528 coding upstream 304815 582498 ~ 589396 (-)
LOC113535779 cacng3,LOC108258515,LOC108439097 coding upstream 367793 645476 ~ 651428 (-)
G368713 NA non-coding downstream 17373 244177 ~ 244780 (-)
G368689 NA non-coding downstream 68239 185834 ~ 193914 (-)
G368685 NA non-coding downstream 77507 179182 ~ 184646 (-)
G368725 NA non-coding upstream 3756 281439 ~ 281903 (-)
G368903 NA non-coding upstream 300910 578593 ~ 581860 (-)
G368912 NA non-coding upstream 393957 671640 ~ 673030 (-)
G368944 NA non-coding upstream 423401 701084 ~ 701288 (-)
G369130 NA non-coding upstream 593906 871589 ~ 875203 (-)
si:dkeyp-75b4.8 NA other downstream 35051 202654 ~ 227102 (-)
pmm2 pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664 other upstream 7180 284863 ~ 289908 (-)
rasd3 LOC108258668 other upstream 313453 591136 ~ 592595 (-)
prkcba prkcb other upstream 375770 653453 ~ 702345 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other upstream 592076 869759 ~ 948803 (-)
G369125 actb other upstream 633870 911553 ~ 915683 (-)

Expression


Co-expression Network