LOC117596123


Basic Information

Item Value
gene id LOC117596123
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 10676632 ~ 10797197 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004577287.1
CCCAATGCAGATACCTGAAGAGCCTCAGTCCTACACATGTCAGTGTCTTCCCTGCTCACTTACCCACTGTTAAtgagctgattagttgaatcagatGTGTTGGGAGAATAACACTATaatgtgcaggacagagtacaaggtactccaggaccaagaTTGGAAATCTGTGGACTAGAGTGTGCCAGTCTCTCCAGGAGGATGCTGGAGCAAGGAAGGGGTTGCCTGGAGCACTGAACTGAAATTCCTACTGTTTAAGATGACTTTTTACACAGTGGTTCGCATGGACATTGGCTAGATCTCCAGCAGAATGTGTGGCCCTAAAGGACAACCCTTCAGAAAAAAACGACCTTGAAACTGATACATTCCCAACAGCTATACAGATTTTTCCTATAGACTAAAATAGGATACTGTCATATTCTGTTGCTTAGAATTTCTCTAAGACCAGCTCTTCCGAGAATTTCAATGAAACTTTTGCTGTTTGTGACACAGATGCATCCATGGCTGTCCTTCAAGTTCATCTAAAACCGGGTGGGCCGAAACCAATTTCCTCTTGTGTAAAGCCAATCTATTCCATGGCTATTGTAGCATGATTAAAAGGCTAAAATGGTTTAGTTAAAATACTCCTAAATCCATAAATGTGTCACATTGATTTCAAATAGGTTTGTAGTGTAGTCATACTGCCCCCTTTTGAATTGAGATGCTTTTTGGACTGAAAACtaccttcatttttttaaaccaccaaaatttctccaaaacattgtgagagactgataaactcctacagaaaacgcTTGCTTCAACTTATTGTTgctactgaattatagggtgtacttattttttctcacctgacttctgaatgttgttttttttgggggaaaaggtttggtttctgtttgtttacagAAGTTGGGGAGGATCACACAATTGATATTTAGgccctgaaaaataaaaacctagaaATGAAGGAGAGTGTACCAtcttttcccatgactgtatgtaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacctggccTTACCGGTCCAGCTACCCCACAGTCCTGGAGGTCAGCCAAGTCTCATCAATTATCCGTAAGCCAATCCTGCGCGTGAGTGGGAGGGTCTGAGGATCATGTTCTGGTTAATTGGGCCTCCATGCATCAATGTGGCACCAATCAACCTTCAGCTCCTCTCAGGCCTGAACTTCAGACGTCTCATATTCAACTGCTGATTGGACAGATAAAACTGACAAGGAGCCACGGCTAGTAAACAGGATGTGGGAGAGTATTGCTGTTACGAGGATGATTAAATTTGCTCTTGGATTAAGCTTCCTCATTGTAACTTGTGTTTACACAATCTTCATGACCTGTGTGCTTAATCACATGCATGTTTGTGTAAAATGGCGAAGACGTTGTCACGTTTTTATGTACATCTGAATGTTGTAGTTTCCAGGCTGCTTGCACAGCTGAAGGATTTTTATTTCTGGAGCTATTTTTGTACTACATTCATATATTTACACTCTAAAAATGGCTGGGTTAAAAATAATCCAGTTTGGGTCAATTTGGAAACCCTGTGCTCAGCGCGGTTAGGTTGGGTTGTTGACCCAGCATGCATGATTGAATTTTTTAACCCAACTAGTTGGTAAAAATGACTATATTTCTGGGATGTAGATACCCAAGTTGTTATGATTACAGTCCTCAGCTAGCATACTTCTGTCAGCAGACTAAC
>XR_004577288.1
GGATGCTGTCAAGCTGGAGGCAGAGAAGctgttctgtctctttctctcgcatgcacacacacacacacacacacactcactgtgacTTCCAGGAGCTTTTTGAGAGTTCTGCAGCTGTGATGGAGAGGAAAGTAGAGGAAACTCTTGTGGACTTTACCTGCATAACGGCAGAGGACAGATGTTCATAGAAACAAAGCAGGATGGAAAGAGGATGCTGGAGCAAGGAAGGGGTTGCCTGGAGCACTGAACTGAAATTCCTACTGTTTAAGATGACTTTTTACACAGTGGTTCGCATGGACATTGGCTAGATCTCCAGCAGAATGTGTGGCCCTAAAGGACAACCCTTCAGAAAAAAACGACCTTGAAACTGATACATTCCCAACAGCTATACAGATTTTTCCTATAGACTAAAATAGGATACTGTCATATTCTGTTGCTTAGAATTTCTCTAAGACCAGCTCTTCCGAGAATTTCAATGAAACTTTTGCTGTTTGTGACACAGATGCATCCATGGCTGTCCTTCAAGTTCATCTAAAACCGGGTGGGCCGAAACCAATTTCCTCTTGTGTAAAGCCAATCTATTCCATGGCTATTGTAGCATGATTAAAAGGCTAAAATGGTTTAGTTAAAATACTCCTAAATCCATAAATGTGTCACATTGATTTCAAATAGGTTTGTAGTGTAGTCATACTGCCCCCTTTTGAATTGAGATGCTTTTTGGACTGAAAACtaccttcatttttttaaaccaccaaaatttctccaaaacattgtgagagactgataaactcctacagaaaacgcTTGCTTCAACTTATTGTTgctactgaattatagggtgtacttattttttctcacctgacttctgaatgttgttttttttgggggaaaaggtttggtttctgtttgtttacagAAGTTGGGGAGGATCACACAATTGATATTTAGgccctgaaaaataaaaacctagaaATGAAGGAGAGTGTACCAtcttttcccatgactgtatgtaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacctggccTTACCGGTCCAGCTACCCCACAGTCCTGGAGGTCAGCCAAGTCTCATCAATTATCCGTAAGCCAATCCTGCGCGTGAGTGGGAGGGTCTGAGGATCATGTTCTGGTTAATTGGGCCTCCATGCATCAATGTGGCACCAATCAACCTTCAGCTCCTCTCAGGCCTGAACTTCAGACGTCTCATATTCAACTGCTGATTGGACAGATAAAACTGACAAGGAGCCACGGCTAGTAAACAGGATGTGGGAGAGTATTGCTGTTACGAGGATGATTAAATTTGCTCTTGGATTAAGCTTCCTCATTGTAACTTGTGTTTACACAATCTTCATGACCTGTGTGCTTAATCACATGCATGTTTGTGTAAAATGGCGAAGACGTTGTCACGTTTTTATGTACATCTGAATGTTGTAGTTTCCAGGCTGCTTGCACAGCTGAAGGATTTTTATTTCTGGAGCTATTTTTGTACTACATTCATATATTTACACTCTAAAAATGGCTGGGTTAAAAATAATCCAGTTTGGGTCAATTTGGAAACCCTGTGCTCAGCGCGGTTAGGTTGGGTTGTTGACCCAGCATGCATGATTGAATTTTTTAACCCAACTAGTTGGTAAAAATGACTATATTTCTGGGATGTAGATACCCAAGTTGTTATGATTACAGTCCTCAGCTAGCATACTTCTGTCAGCAGACTAAC

Function

GO:

id name namespace
GO:0048368 lateral mesoderm development biological_process
GO:0045202 synapse cellular_component

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05032 Morphine addiction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004577287.1 False 1736 lncRNA 0.41 3 10676632 10794557
XR_004577288.1 True 1749 lncRNA 0.41 3 10676632 10797197

Neighbor

gene id symbol gene type direction distance location
tubgcp3 tubgcp3,LOC107692132,LOC107746265 coding downstream 114925 10529524 ~ 10561707 (-)
mcf2la mcf2l coding downstream 149756 10439948 ~ 10526876 (-)
arl11 arl11 coding downstream 277381 10397901 ~ 10399251 (-)
LOC113537273 kcnrg coding downstream 317198 10355226 ~ 10359434 (-)
LOC113537761 LOC108258610 coding downstream 440474 10217608 ~ 10236158 (-)
arhgef7b arhgef7,arhgef7b,LOC107718510,LOC107567796,LOC107676887 coding upstream 9238 10806435 ~ 10838961 (-)
eif5b eif5b,LOC102778822 coding upstream 53179 10850376 ~ 10870096 (-)
map2k7 map2k7,LOC107712243,LOC107692141 coding upstream 136948 10934145 ~ 10946702 (-)
pkn1a LOC108428230,LOC107603033,LOC107712223,LOC107676851,LOC107561874 coding upstream 151881 10949078 ~ 10995765 (-)
si:ch211-214c7.4 prr36,LOC108258951 coding upstream 204470 11001667 ~ 11019985 (-)
G373762 NA non-coding downstream 111708 10495636 ~ 10564924 (-)
LOC113537663 NA non-coding downstream 384054 10290637 ~ 10292578 (-)
G373719 dleu7 non-coding downstream 387259 10288380 ~ 10289373 (-)
G373714 NA non-coding downstream 407971 10255003 ~ 10268661 (-)
G373678 NA non-coding downstream 429812 10191996 ~ 10246820 (-)
G374040 NA non-coding upstream 131270 10928467 ~ 10929554 (-)
G374039 NA non-coding upstream 132542 10929739 ~ 10933407 (-)
G374091 sept3 non-coding upstream 270534 11067731 ~ 11067952 (-)
G374093 atf7ip non-coding upstream 287445 11084642 ~ 11120831 (-)
G374105 NA non-coding upstream 341986 11139183 ~ 11139811 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 241265 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 757853 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2065791 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 2244194 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 2347606 8320868 ~ 8329026 (-)
lipt1 lipt1 other upstream 74027 10871224 ~ 10872556 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 1281694 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1827854 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 2510516 13307713 ~ 13320530 (-)
G375428 NA other upstream 2642022 13439219 ~ 13439535 (-)

Expression


Co-expression Network