G389438 (LOC108260589,LOC108260518,LOC108260515)


Basic Information

Item Value
gene id G389438
gene name LOC108260589,LOC108260518,LOC108260515
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 402002 ~ 950407 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU461720
GCTGAGGGGAAAGTGTGTACTGAGCATGTacagactgaacacactgcCACAGGAGGAGCTGCAGCGGGTTGATGGATGTGAGCCAGTAAAGACGCTAAGCTAACAGCATCGGAAGCATAACAtacagcagaaacacacaccatgtcgcTTATCTGctagttttattgtttataaaatcCTTCAGTGACACTGATGTTCAGGACGACGGGAAAATGTCTGGCTGACAAACACTTACTATGGATTATGAAAATGTGACTATTTTAGCAGGAAACAGGATTCTCTGGACTTTTCTTCTCCTGCTGTGCTGTTTACTGTGTGCGGCTGGAGACGAGACGGTCAAACTGCAGGAAGTGGAAGGAACCACTATAACTCTCCATACTGGAATAACTGGAATTCAGAGTGATGCTCAGATTCAGTGGTTTTATGGACCTGAGAAAGCAGAGGAAATTATATTGATTAGTCCAGTATTTACAGAACAAAGAGAAATCAGTGAGAGATTTAAAGAGCGACTGCAGCTGGACAGAACCAGTGGAGCTTTAACCATCAGGAACATCAGCAGAAACCATTCtggagtttatttattacaagttCTTACTCCACGTCTCTCATCTAGGactttcagtgtcagtgtttatg
>TU461721
ACGCATATCATCTAGGactttcagtgtcagtgtttatgCTCCAGTATCAACTCCAGTAATAAGAAATGAAAGAGGAAATGGAAGTGTGTCTTCCACAGAGCAGTGTTTCCTCCTGTGCACTGTGGAGAATGGAGAAGATGTGAAGTTATCCTGGTACAGAGGGAATGAGAGACTCAATATCACCAATAACACAGATCTCAGTGTTCCCCTCAATCTCCCACTTCAAATACAACTCCATGATAATAACACTAACACTTATATCTGTGTGTCTGCAAACCCTGTCAGCAATAAAACAACTTCTCTCAACATCGCACAGCTCTGTGATCATAACTCAGGACAAACTGATCGTTCCCGTTCACTGCTTCCTGTCCTGATATCTGCTGGA
>TU461723
aataataataataataataatccatgtGCTACAGAATATATCCGATTCCCAGATGTGTAATAGCGTCACATTTCTGAGTtaaaaacatcatcatctgAAATGACAAATCTGTAGCACAGTACAGTCTGTGAGTGAAATGATGaatctgaagctgaagctgtgaTGCAGGTTTACTGTGTGCGGCTGGAGACGAGACGGTCAAACTGCAGGAAGTGGAAGGAACCACTATAACTCTCCATACTGGGATCACTGGAATTCAGAGTGATGCTCAGATTGTGTGGCTCTATGGACCTGAGAAAGCAGAGGAAATTATATTGAACAGTCAGGTGTTTAAAGGAGAAACAGAAATCAGTGAGAGATTTAAAGAGCGACTGCAGCTGGACAGAACCAGTGGAGCTTTAACCATCAGGAACATCAGCAGAAATGATTCtggagtttatttattacaagttCTTGCTGGACGTCTCACATCCAGGactttcagtgtcagtgtttatgCTCCAGTATCAACTCCAGTAATAAGAAATGAAAGAGGAAATGGAAGTGTGTCTTCCACAGAGCAGTGTTTCCTCCTGTGCACTGTGGAGAATGGAGAAGATGTGAAGTTATCCTGGTACAGAGGGAATGAGAGACTCAATATCACCAATAACACAGATCTCAGTGTTCCCCTCAATCTCCCACTTCAAATACAACTCCATGATAATAACACTAACACTTATATCTGTGTGTCTGCAAACCCTGTCAGCAATAAAACAACTTCTCTCAACATCGCACAGCTCTGTGATCATAACTCAGGACAAACTGATCGTTCCCGTTCACTGCTTCCTGTCCTGATATCTGCTGGA
>TU461729
AATCTGTAGCACAGTACAGTCTGTGAGTGAAATGATGaatctgaagctgaagctgtgaTGCAGGTTTACTGTGTGCGGCTGGAGACGAGACGGTCAAACTGCAGGAAGTGGAAGGAACCACTATAACTCTCCATACTGGAATAACTGGAATTCAGAGTGATGCTCAGATTCTGTGGTCTTATGGACCtgagaaagcacagaaaaaGATATTGAACAGTCAGGTGTTAAAAGGAGAAACTGTTACAGAAATCAGTGAGAGATTTAAAGAGCGACTGCAGCTGGACAGAACCAGTGGAGCTTTAACCATCAGGAACATCAGCAGAAACCATTCtggagtttatttattacaagtcATCGCTGATGATATCACATCCAGGactttcagtgtcagtgtttatgCTCCAGTATCAACTCCAGTAATAAGAAATCAAAGAGGAAATGGAAGTGTGTCTTCCACAGAGCAGTGTTTCCTCCTGTGCACTGTGGAGAATGGAGAAGATGTGAAGTTATCCTGGTACAGAGGGAATGAGAGACTCAATATCACCAATAACACAGATCTCAGTGTTCCCCTCAATCTCCCACTTCAAATACAACTCCATGATAATAACACTAACACTTATATCTGTGTGTCTGCAAACCCTGTCAGCAATAAAACAACTTCTCTCAACATCGCACAGCTCTGTGATCATAACTCAGGACAAACTGATCGTTCCCGTTCACTGCTTCCTGTCCTGATATCTGCTGGA
>TU461730
GTGTCCGTGCCTCAGAAGGACAGAGCATTCTCTCAGTACAGCGAAAGAATGAAAGTAATGCTGATAAACCTCTTTAAACATTCCTGGAACCTGATTTTCTGCTAATGAACAATGCTAACTGTTGACCATTTACACATCAGGGTCCTCACATGGACGTGATTTAAAGGACATCGTCATCGTCTGAGCTGGAGGCTTTACTGAGCTCTTTACGGTCCATAAGACCACAGAATCTGAGCATCACTCTGAATTCCAGTTCTCCCAGTATGGAGAGTTATAGTGGTTCCTTCCACTTCCTGCAGTTTGACCGTCTCGTCTCCAGCCGCACACAGTAAACCTGCAtcacagcttcagcttcagattCATCATTTCActcacaaacacaatcacatacaGTCCATTAAAACTACACTGTGCTACAGATTtgtcatttcatatttaaattccaaaatgcaaaaaaatctggGAATCTGTTCTGCATTCTGTAACACATACATTATTAGGTACTGCTGCACTGCTGTATGTTGTACACTGCATAATATTTTTGAGTATATTAGCC
>TU461736
GCTGAGGGGAAAGTGTGTACTGAGCATGTacagactgaacacactgcCACAGGAGGAGCTGCAGCGGGTTGATGGATGTGAGCCAGTAAAGACGCTAAGCTAACAGCATCGGAAGCATAACAtacagcagaaacacacaccatgtcgcTTATCTGctagttttattgtttataaaatcCTTCAGTGACACTGATGTTCAGGACGACGGGAAAATGTCTGGCTGACAAACACTTACTATGGATTATGAAAATGTGACTATTTTAGCAGGAAACAGGATTCTCTGGACTTTTCTTCTCCTGCTGTGCTGTTTACTGTGTGCGGCTGGAGACGAGACGGTCAAACTGCAGGAAGTGGAAGGAACCACTATAACTCTCCATACTGGGATCACTGGAATTCAGAGTGATGCTCAGATTCAGTGGTTTTATGGACCTGAGAAAGCAGAGGAAATTATATTGATTAGTCCAGTATTTACAGAACAAAGAGAAATCAGTGAGAGATTTAAAGAGCGACTGCAGCTGGACAGAACCAGTGGAGCTTTAACCATCAGGAACATCAGCAGAAACCATTCtggagtttatttattacaagttCTTACTCCACGTCTCTCATCTAGGactttcagtgtcagtgtttatg
>TU461737
GTGGCACTAAATCAAGTGCAGaccagaatttatttattttttttGCAAGAGCAGGTTACAGACTGAACAAGCTGACACAGGTGTTCCCCTTCAGTGGTTTGATGGAAGTGAGCCAGTAAAGACGTTACACTAACAGTAACGGAAGGTTGTGTAACTGCACTGCGCACAACATGCTTGACTGACACTGATGTTCGGGACCTCGGAGAAAAATGTAAAGCTGAGCAACGCTTACTATGGCTCATGAAAATGATTTAGCAGAAATCAGGACTCTCAGGACTCTTCTTCTCCTGCTGTGCTGTTTACTGTGTGCGGCTGGAGACGAGACGGTCAAACTGCAGGAAGTGGAAGGAACCACTATAACTCTCCATACTGGAATAACTGGAATTCAGAGTGATGCTCAGATTCTGTGGTCTTATGGACCTGAGAAAGCAGAGGAAATTATATTGATTAGTCCAGTATTTACAGAACAAAGAGAAATCAGTGAGAGATTTAAAGAGCGACTGCAGCTGGACAGAACCAGTGGAGCTTTAACCATCAGGAACATCAGCAGAAACCATTCtggagtttatttattacaagttCTTACTCCACGTCTCTCATCTAGGactttcagtgtcagtgtttatg
>TU461740
GTGTCCGTGCCTCAGAAGGACAGAGCATTCTCTCAGTACAGCGAAAGAATGAAAGTAATGCTGATAAACCTCTTTAAACATTCCTGGAACCTGATTTTCTGCTAATGAACAATGCTAACTGTTGACCATTTACACATCAGGGTCCTCACATGGACGTGATTTAAAGGACATCGTCATCGTCTGAGCTGGAGGCTTTACTGAGCTCTTTACGGTCCATAAGACCACAGAATCTGAGCATCACTCTGAATTCCAGTTATTCCAGTATGGAGAGTTATAGTGGTTCCTTCCACTTCCTGCAGTTTGACCGTCTCGTCTCCAGCCGCACACAaaaagTGGACTGAACTGGATCTTTCCCTGTCGCTGGAGTGGAGAAAAACACCTTCTGTACCTTCAGGTGTGTCTCTAAACATTACTCTCAAAGCTAATTAATGTACATGAGAGTTTCTTAAACTAATCATGTTCCTCAGAtcaattaaaagtaaaacacactcatataataaaaaaaacacacactacaggaaTAAATGATGTGCTGTAGAGAGTCCCAcctcagtgacagtgaaaagtgctgttcagtgtttattctgAGAGTTTAATAGAAAGGAAACTAAACAGGTTCCTGTGTTTGGcttttgtttgaaaagtcaaagtGCTGTGAAACAGGAGCTTTTCAGAGGACTCATTAACACCAGCTCTAAACTGCTGTAGCACTGTTCAGCTTAACACTGAGCAAAATTCACTCCATCCAACACACCAAGTATTACACTGACTTTCACAACCCACTTTCCCTTCTTCAGGACTGACTTCTTTTATAAAACTCTGTAGATTTACAGTTACACTTTCTTCTGTTGTGAAGGAAAGGTGTAAACTTACAGCACAGCAGGAGGAGAAAAGTCCAGAGAATCCTGTTTCCTGCTAAAATAGTCACATTTTCATAATCCATAGTAAGTGTTTGTCAGCCAGACATTTTCCCGTCGTCCTGAACATCAGTGTGAGTGAAGGATTCAGTGCACAAAGCAGTTGAACGCCATGATGTGTGGAGCTGCAGATCACAAGCTTCCACACGCTGTTAGCTTAGTGAACTGCCTCCTCCTGTAGAAAAGCTCACTCCTGTCTCAGTGTTCAGTCTGTACATGCTCAGTGCACTCCTTTCAGCTCTGTGCACCTTCATGTGCACCTTCTTTTGTGGGTACAAACGGCTTTCTCAGATGTGTTTACACTAAAATTGCAAATCTTTTAAATTGTATGATTACATAAGTCTACAAATGTTACAGACAGTCTGTACAAAAGTCAGTGCACCCTTTTGTTTTTGATCACATGGTCATTCAGTACTTactgttaattatttggtggTAAACAATATGAtggaaaaatgtacagtacattaattCCATTTTCAGTCAAACAGCCATGCAGTAcctttgtgtgatttatgagcaaaaatgacaggaaaatatatttaacagaaaaacagcat
>TU461743
CGTGTACTGAGCGTGTacagactgaacacactgaGACAGGACTTCCGCCCAGCGCTCTGATGAATGTGGGACAGTAAAGACGCTAAGCTAACAGTAAGGGAAGGTTGTGTACAGCAGCAACATAACTGCACTGAACACAACATTCTTCACTGATAATGACATGGAGGAGAAGCGAAAGAAACTGCTGGGGAATATTTTAGCAGAAATCAGGACTCTCAGGACTCTTCTTCTCCTGCTGTGCTGTTTACTGTGTGCGGCTGGAGACGAGACGGTCAAACTGCAGGAAGTGGAAGGAACCACTATAACTCTCCATACTGGAATAACTGGAATTCAGAGTGATGCTCAGATTCTGTGGTCTTATGGACCTGAGAAAGCAGAGGAAAAGATATTATTTAGTCAGGTGTTTAAAGGAGAAACTGCTACAAAAATCAGTGAGAGATTTAAAGAGCGACTGCAGCTGGACAGAACCAGTGGAGCTTTAACCATCAGGAACATCAGCAGAAATGATTCtggagtttatttattacaagttCTTACTCCACGTCTCTCATCTAGGactttcagtgtcagtgtttatgCTCCAGTATCAACTCCAGTAATAAGAAATCAAAGAGGAAATGGAAGTGTGTCTTCCACAGACCAGTGTTTCCTCCTGTGCACTGTGGAGAATGGAGAAGATGTGAAGTTATCCTGGTACAGAGGGAATGAGAGACTCAATATCACCAATAACACAGATCTCAGTGTTCCCCTCAATCTCCCACTTCAAATACAACTCCATGatattaacactaacacttatATCTGTGTGTCTGCAAACCCTGTCAGCAGTAAAACAACTTCTCTCAACATCGCACAGCTCTGTGATCATAACTCAGGACAAACTGATCGTTCCCGTTCACTGCTTCCTGTCCTGATATCTGCTGGAGTTTTCCTATTAATAATATCCATACCTGTGTGGCTTTGgctaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU461720 False 636 TUCP 0.43 3 402002 932118
TU461721 False 385 lncRNA 0.43 3 946120 950362
TU461723 False 845 lncRNA 0.42 3 949010 950362
TU461729 False 746 lncRNA 0.43 5 939048 950362
TU461730 False 556 lncRNA 0.41 2 438504 929047
TU461736 False 636 TUCP 0.43 4 402002 932118
TU461737 False 627 TUCP 0.43 4 512320 932118
TU461740 True 1477 lncRNA 0.40 3 438504 501155
TU461743 False 970 TUCP 0.43 5 934929 950407

Neighbor

gene id symbol gene type direction distance location
trnak-uuu_21 NA coding upstream 84348 317582 ~ 317654 (+)
rps6 rps6 coding upstream 112342 284647 ~ 289660 (+)
LOC113524531 LOC108260598 coding upstream 221260 125116 ~ 180742 (+)
LOC117596366 NA coding upstream 254260 145825 ~ 147742 (+)
LOC117596367 NA coding upstream 287389 112191 ~ 114613 (+)
suclg1 suclg1 coding downstream 11287 961694 ~ 979326 (+)
lrrtm1 lrrtm1,LOC107689474,LOC107706126,LOC107551676,LOC107558618 coding downstream 365252 1315659 ~ 1320076 (+)
LOC113545749 nrxn1,LOC108443646 coding downstream 922909 1873316 ~ 2185917 (+)
LOC113545799 LOC100305044 coding downstream 1369935 2320342 ~ 2335887 (+)
rtn4b rtn4,LOC108412986,LOC105890919 coding downstream 1438424 2388831 ~ 2413115 (+)
G389492 NA non-coding upstream 26054 339600 ~ 375948 (+)
G389442 NA non-coding upstream 27332 352807 ~ 374670 (+)
G389490 LOC108260594,LOC108260595,LOC108260596 non-coding upstream 55409 338873 ~ 346593 (+)
G389450 glb1 non-coding upstream 352382 47572 ~ 49620 (+)
G389542 NA non-coding downstream 30016 980423 ~ 998703 (+)
G389707 NA non-coding downstream 266322 1216729 ~ 1232853 (+)
G389959 smox non-coding downstream 737390 1687797 ~ 1692987 (+)
G389967 NA non-coding downstream 762633 1713040 ~ 1713242 (+)
G389985 NA non-coding downstream 804310 1754717 ~ 1760912 (+)
LOC117596315 NA other upstream 51997 348396 ~ 350005 (+)
LOC113524533 NA other upstream 53667 333139 ~ 348335 (+)
smu1b LOC108260605,LOC108431794,LOC107720315,LOC107692159,LOC107746727,LOC107551820 other upstream 73511 290979 ~ 328491 (+)
G389456 LOC108260598 other upstream 220989 99214 ~ 181013 (+)
adra1d adra1d,LOC107689480,LOC107719776,LOC107711521 other downstream 668890 1619297 ~ 1632772 (+)
rnf24 rnf24,LOC107689472,LOC107551705 other downstream 764858 1715265 ~ 1750762 (+)
LOC113545784 clhc1 other downstream 1414147 2364554 ~ 2386867 (+)
LOC113545782 rasgrp2,LOC108261011,LOC108427446 other downstream 2408970 3359377 ~ 3400825 (+)
LOC113545745 ptprd other downstream 3513491 4463898 ~ 4856974 (+)

Expression


Co-expression Network