G389498


Basic Information

Item Value
gene id G389498
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 403704 ~ 404420 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU461935
GTGAGATCAATATTGAGGACGCggaagctgcatcacaccacccaagcAGTACTTAGACAAACAGTAACTAGAGAAGCAGTATTTAGACAAGCAGTATTTAGACAAGCAGTACCTGGACAAGACTGTCCCTCAAAACTCATAAACAAGACAGAGACTGTGCCCCAAAagtcactctgaaggagttaTAGAGTACAGTGGCTGAGAGTGAAGTGAAGGTGCATCAGACAACCATTTTATGAGCTCTGCATAGCCGGGGAATGTGTGGAAGGCATGGCTAAAAAGAAACTGATGCTCAAGAACAGCTGTATGAAAACACAAGAGCCAATCagtgaagatgtgttttttggtgagatgagaccaagatctaGATACTGTATTTGGGCAAGTGCTGTGTGTGCTTTCTATCCACTGAACCTGGGCTTCTTGTCAAAATTGAAGAAAGAATGGATAGAGTCAAATACAGGAGGATATTAGAAAAGAAATCGCTTCAGTCTGCTAAAAAACTAAAGCTTGGAAGAAACTTCACCGTTCAGCAGGACAATGGTCTCAAACACAAGACCAAAGCAGCCTGAAGAAGCTGGAGCAAATCTGGCAggaagaatgggtgaaaatcTCAAACAACGCGCAGAGCTGGCAGGAACTTCACCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU461935 True 649 lncRNA 0.44 2 403704 404420

Neighbor

gene id symbol gene type direction distance location
trnak-uuu_21 NA coding upstream 86050 317582 ~ 317654 (+)
rps6 rps6 coding upstream 114044 284647 ~ 289660 (+)
LOC113524531 LOC108260598 coding upstream 222962 125116 ~ 180742 (+)
LOC117596366 NA coding upstream 255962 145825 ~ 147742 (+)
LOC117596367 NA coding upstream 289091 112191 ~ 114613 (+)
LOC117596377 LOC108260518 coding downstream 690 405110 ~ 408556 (+)
LOC117596316 LOC108260515,LOC108260518,LOC108260589 coding downstream 56885 461305 ~ 499554 (+)
LOC117596373 LOC108260589,LOC108260518 coding downstream 69695 474115 ~ 483907 (+)
LOC113545724 NA coding downstream 108390 512810 ~ 517919 (+)
LOC113545735 NA coding downstream 160417 564837 ~ 565963 (+)
G389492 NA non-coding upstream 27756 339600 ~ 375948 (+)
G389442 NA non-coding upstream 29034 352807 ~ 374670 (+)
G389490 LOC108260594,LOC108260595,LOC108260596 non-coding upstream 57111 338873 ~ 346593 (+)
G389450 glb1 non-coding upstream 354084 47572 ~ 49620 (+)
G389500 NA non-coding downstream 13664 418084 ~ 434111 (+)
G389440 NA non-coding downstream 20165 424585 ~ 466809 (+)
LOC117596380 NA non-coding downstream 23175 427595 ~ 428210 (+)
G389501 NA non-coding downstream 24071 428491 ~ 445978 (+)
G389441 NA non-coding downstream 39987 444407 ~ 509731 (+)
LOC117596315 NA other upstream 53699 348396 ~ 350005 (+)
LOC113524533 NA other upstream 55369 333139 ~ 348335 (+)
smu1b LOC108260605,LOC108431794,LOC107720315,LOC107692159,LOC107746727,LOC107551820 other upstream 75213 290979 ~ 328491 (+)
G389456 LOC108260598 other upstream 222691 99214 ~ 181013 (+)
G389524 NA other downstream 382956 787376 ~ 800566 (+)
G389525 NA other downstream 399940 804360 ~ 805216 (+)
adra1d adra1d,LOC107689480,LOC107719776,LOC107711521 other downstream 1214877 1619297 ~ 1632772 (+)
rnf24 rnf24,LOC107689472,LOC107551705 other downstream 1310845 1715265 ~ 1750762 (+)
LOC113545784 clhc1 other downstream 1960134 2364554 ~ 2386867 (+)

Expression


Co-expression Network