Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC113545735 |
| gene name | NA |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047622.1 |
| NCBI id | CM018568.1 |
| chromosome length | 15845479 |
| location | 564837 ~ 565963 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_034301029.1 | True | 643 | mRNA | 0.48 | 4 | 564837 | 565963 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113545724 | NA | coding | upstream | 46918 | 512810 ~ 517919 (+) |
| LOC117596316 | LOC108260515,LOC108260518,LOC108260589 | coding | upstream | 65283 | 461305 ~ 499554 (+) |
| LOC117596373 | LOC108260589,LOC108260518 | coding | upstream | 80930 | 474115 ~ 483907 (+) |
| LOC117596377 | LOC108260518 | coding | upstream | 156281 | 405110 ~ 408556 (+) |
| trnak-uuu_21 | NA | coding | upstream | 247183 | 317582 ~ 317654 (+) |
| LOC113545725 | NA | coding | downstream | 158164 | 724127 ~ 727917 (+) |
| LOC113545734 | NA | coding | downstream | 180744 | 746707 ~ 749895 (+) |
| si:dkey-22i16.9 | NA | coding | downstream | 185172 | 751135 ~ 755659 (+) |
| scpp9 | NA | coding | downstream | 192809 | 758772 ~ 762952 (+) |
| odam | LOC108260526 | coding | downstream | 198343 | 764306 ~ 767760 (+) |
| G389441 | NA | non-coding | upstream | 55106 | 444407 ~ 509731 (+) |
| G389440 | NA | non-coding | upstream | 98028 | 424585 ~ 466809 (+) |
| G389501 | NA | non-coding | upstream | 118859 | 428491 ~ 445978 (+) |
| G389500 | NA | non-coding | upstream | 130726 | 418084 ~ 434111 (+) |
| G389505 | NA | non-coding | downstream | 38456 | 604419 ~ 658738 (+) |
| G389506 | NA | non-coding | downstream | 46340 | 612303 ~ 731165 (+) |
| G389515 | NA | non-coding | downstream | 170896 | 736859 ~ 741306 (+) |
| LOC117596382 | NA | non-coding | downstream | 372703 | 938666 ~ 939174 (+) |
| G389542 | NA | non-coding | downstream | 414460 | 980423 ~ 998703 (+) |
| LOC117596315 | NA | other | upstream | 214832 | 348396 ~ 350005 (+) |
| LOC113524533 | NA | other | upstream | 216502 | 333139 ~ 348335 (+) |
| smu1b | LOC108260605,LOC108431794,LOC107720315,LOC107692159,LOC107746727,LOC107551820 | other | upstream | 236346 | 290979 ~ 328491 (+) |
| G389456 | LOC108260598 | other | upstream | 383824 | 99214 ~ 181013 (+) |
| G389524 | NA | other | downstream | 221413 | 787376 ~ 800566 (+) |
| G389525 | NA | other | downstream | 238397 | 804360 ~ 805216 (+) |
| adra1d | adra1d,LOC107689480,LOC107719776,LOC107711521 | other | downstream | 1053334 | 1619297 ~ 1632772 (+) |
| rnf24 | rnf24,LOC107689472,LOC107551705 | other | downstream | 1149302 | 1715265 ~ 1750762 (+) |
| LOC113545784 | clhc1 | other | downstream | 1798591 | 2364554 ~ 2386867 (+) |
