si:ch211-217k17.11


Basic Information

Item Value
gene id si:ch211-217k17.11
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047622.1
NCBI id CM018568.1
chromosome length 15845479
location 69450 ~ 74454 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301263.1
GTGttctttatttacacttttatgAAGCTTTTGCTACTCGGAGGAGAGACGAGTTGATCTGACCTCGGTATTTCCCTCCTCCCCTTTTATACTCCACAAAATGATATAAAGACAGCAGACAGATCAGCGCACAACAGACCTTCTGAAGAGAGAAGATGTCGACTGCACAAGTCTGCTCTCCTCCGcaTTGCTGTAGTTTGCCAAAAGCTGATCCTCCTAAGGTTAACCCTGAGCCCAAACATCATGCAAAGTTCAGTCACACCACTCACAGCTTTCtaaaagtgtgtgatgatgcCCCAGGATCTCCTCAGCCTGAGAAGATTGATGTCACTGTCTTCGATCCTTCTAAGAACATCCGCATCCCGTTTACCCTAAAGAGCACAGACACCACTGACATGCTGAACGAGAAATACCTGCAGATGAGGCCTGAGCTGGTGGGAACGCTGAACCTTGCCTACAACGGCAAACCAGTTCCAGGGCAGAAGACCCTGAGAGAGCTGGGGGTGAAGCCCGGGGCCGTGTTCATCACCTTCCAGAGATGCGTTGGAGGATAAGAGACCGGGCGTCACACCTCTGTCTTTATCTGCAAAATGAATCTGATCTCTTTTCACTCCTCTCACAAACTTTATTCTCAGGTCACTCAATAAtatgaatacacacatacatatactgtatatatacacacaaaaatctCATATCATTTGGtacaatataattttaaaccacttttatttactttgcaTTTACTGTAAGTCTCTGTAGGTTCATCACATTCTGGCTTTAAATTTTACAAGTTGAAATGAATTTGCTGACCGTAACTGTCATCACATTTACTgatctttctgttttattacatattttttaatctcATATActtcttaaaaattaaataaacttattAAAGAATTGTATAAACA
>XM_034301264.1
AGATTGTGttctttatttacacttttatgAAGCTTTTGCTACTCGGAGGAGAGACGAGTTGATCTGACCTCGGTATTTCCCTCCTCCCCTTTTATACTCCACAAAATGATATAAAGACAGCAGACAGATCAGCGCACAACAGACCTTCTGAAGAGAGAAGATGTCGACTGCACAAGTCTGCTCTCCTCCGcaTTGCTGTAGTTTGCCAAAAGCTGATCCTCCTAAGGTTAACCCTGAGCCCAAACATCATGCAAAGTTCAGTCACACCACTCACAGCTTTCtaaaagtgtgtgatgatgcCCCAGGATCTCCTCAGCCTGAGAAGATTGATGTCACTGTCTTCGATCCTTCTAAGAACATCCGCATCCCGTTTACCCTAAAGAGCACAGACACCACTGACATGCTGAACGAGAAATACCTGCAGATGAGGCCTGAGCTGGTGGGAACGCTGAACCTTGCCTACAACGGCAAACCAGTTCCAGGGCAGAAGACCCTGAGAGAGCTGGGGGTGAAGCCCGGGGCCGTGTTCATCACCTTCCAGAGATGCTTTGGAGGATAAGAGACCGGACATCACACCTCTGTCTTTATCCGCaaaattcattttccataaaatcAAATCTGTTTTCACTTCTCACTCTCTGAAAAATAATCTTAggtctattttaaaataaaacagggtAAATGTCTTCATTGTGTTCAACCCTTTTAATTATTCTGGGacaggaaattaaaaaacaatactacaacacacactaaacagGTCACTATGCTCATATCTACAGTGTAATATAATTTCAAACCATTAACATTTAGTTTGTAGATAGgtctatatatttctatatctcttcatttttaattaaaaacttttGTTAGTAATTTGTTAGTTTCAGCTGACTgtaattatcatttattttactgatCATATTGTTTCAATCTATTTCTATGCTTTTGTTTATTCTGATATCTTTATGTACtccttaaaataaagtaaataaaattttttctGTGAACATCA

Function

GO: NA

KEGG:

id description
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko05332 Graft-versus-host disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301263.1 False 917 mRNA 0.41 2 69455 70725
XM_034301264.1 True 1015 mRNA 0.39 3 69450 74454

Neighbor

gene id symbol gene type direction distance location
ccdc86 ccdc86,si:ch211-217k17.7,LOC107570826,LOC107675318,LOC107571916,LOC107746093 coding upstream 1548 60948 ~ 67902 (+)
LOC117596365 LOC108260518 coding upstream 38900 26668 ~ 30550 (+)
LOC117596358 LOC108260518 coding upstream 63494 4072 ~ 5956 (+)
LOC117596367 NA coding downstream 37737 112191 ~ 114613 (+)
LOC113524531 LOC108260598 coding downstream 50662 125116 ~ 180742 (+)
LOC117596366 NA coding downstream 71371 145825 ~ 147742 (+)
rps6 rps6 coding downstream 210193 284647 ~ 289660 (+)
trnak-uuu_21 NA coding downstream 243128 317582 ~ 317654 (+)
G389450 glb1 non-coding upstream 19830 47572 ~ 49620 (+)
G389490 LOC108260594,LOC108260595,LOC108260596 non-coding downstream 264419 338873 ~ 346593 (+)
G389492 NA non-coding downstream 265146 339600 ~ 375948 (+)
G389442 NA non-coding downstream 278353 352807 ~ 374670 (+)
G389498 NA non-coding downstream 329250 403704 ~ 404420 (+)
G389500 NA non-coding downstream 343630 418084 ~ 434111 (+)
G389456 LOC108260598 other downstream 24760 99214 ~ 181013 (+)
smu1b LOC108260605,LOC108431794,LOC107720315,LOC107692159,LOC107746727,LOC107551820 other downstream 216525 290979 ~ 328491 (+)
LOC113524533 NA other downstream 258685 333139 ~ 348335 (+)
LOC117596315 NA other downstream 273942 348396 ~ 350005 (+)
G389438 LOC108260589,LOC108260518,LOC108260515 other downstream 327548 402002 ~ 950407 (+)

Expression


Co-expression Network