Gene
RNA
| Item | Value |
|---|---|
| gene id | trnak-uuu_21 |
| gene name | NA |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047622.1 |
| NCBI id | CM018568.1 |
| chromosome length | 15845479 |
| location | 317582 ~ 317654 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| trnak-uuu_21 | True | 73 | tRNA | 0.56 | 1 | 317582 | 317654 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| rps6 | rps6 | coding | upstream | 27922 | 284647 ~ 289660 (+) |
| LOC113524531 | LOC108260598 | coding | upstream | 136840 | 125116 ~ 180742 (+) |
| LOC117596366 | NA | coding | upstream | 169840 | 145825 ~ 147742 (+) |
| LOC117596367 | NA | coding | upstream | 202969 | 112191 ~ 114613 (+) |
| si:ch211-217k17.11 | NA | coding | upstream | 243128 | 69450 ~ 74454 (+) |
| LOC117596377 | LOC108260518 | coding | downstream | 87456 | 405110 ~ 408556 (+) |
| LOC117596316 | LOC108260515,LOC108260518,LOC108260589 | coding | downstream | 143651 | 461305 ~ 499554 (+) |
| LOC117596373 | LOC108260589,LOC108260518 | coding | downstream | 156461 | 474115 ~ 483907 (+) |
| LOC113545724 | NA | coding | downstream | 195156 | 512810 ~ 517919 (+) |
| LOC113545735 | NA | coding | downstream | 247183 | 564837 ~ 565963 (+) |
| G389450 | glb1 | non-coding | upstream | 267962 | 47572 ~ 49620 (+) |
| G389490 | LOC108260594,LOC108260595,LOC108260596 | non-coding | downstream | 21219 | 338873 ~ 346593 (+) |
| G389492 | NA | non-coding | downstream | 21946 | 339600 ~ 375948 (+) |
| G389442 | NA | non-coding | downstream | 35153 | 352807 ~ 374670 (+) |
| G389498 | NA | non-coding | downstream | 86050 | 403704 ~ 404420 (+) |
| G389500 | NA | non-coding | downstream | 100430 | 418084 ~ 434111 (+) |
| G389456 | LOC108260598 | other | upstream | 136569 | 99214 ~ 181013 (+) |
| LOC113524533 | NA | other | downstream | 15485 | 333139 ~ 348335 (+) |
| LOC117596315 | NA | other | downstream | 30742 | 348396 ~ 350005 (+) |
| G389438 | LOC108260589,LOC108260518,LOC108260515 | other | downstream | 84348 | 402002 ~ 950407 (+) |
| G389524 | NA | other | downstream | 469722 | 787376 ~ 800566 (+) |
| G389525 | NA | other | downstream | 486706 | 804360 ~ 805216 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| rainbow trout (Oncorhynchus mykiss) | trnak-uuu-127 | NA | coding | NC_048583.1 | CM023237.2 | 19994594 ~ 19994666 (-) |
| eurasian perch (Perca fluviatilis) | trnak-uuu_22 | NA | coding | NC_053131.1 | CM020928.1 | 14939806 ~ 14939878 (-) |
| tiger barb (Puntius tetrazona) | trnak-uuu_107 | NA | coding | NC_056715.1 | CM032084.1 | 4910050 ~ 4910122 (-) |
| tiger barb (Puntius tetrazona) | trnaa-cgc_14 | NA | coding | NC_056704.1 | CM032073.1 | 13440955 ~ 13441026 (-) |
| mexican tetra (Astyanax mexicanus) | trnak-uuu_34 | NA | non-coding | NC_035902.1 | CM008305.1 | 25591433 ~ 25591505 (-) |
