G404982


Basic Information

Item Value
gene id G404982
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13127399 ~ 13127656 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU480472
TCAAGAATGGTTTGTAGTTTCGCACATTTGCCAGTCTGTTATGGGAGAACGGTTTTGAATATCAGAGTTCCTTTGGTGACTTTTGTTTAGACAGgcctcaagatgatgtgaggcaaatttggtgaagactggacaaaatttggaggagtaccaaaaatggcagtttgatgtaagcattttttaccatgttattgttacttttgaccagtaggcgGCACTGGCACAAAATTTATTGCATTGCCTCAGGACATGGTCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480472 True 258 lncRNA 0.41 1 13127399 13127656

Neighbor

gene id symbol gene type direction distance location
LOC117596411 LOC101068103,LOC105418166,LOC108412963,LOC106522608,LOC105419408,LOC108431938,LOC106674638,LOC108415995 coding downstream 35653 13087487 ~ 13091746 (-)
crabp2b crabp2,crabp2b,LOC107656471 coding downstream 181022 12937224 ~ 12946377 (-)
scamp3 scamp3,LOC106588184 coding downstream 201135 12915978 ~ 12926264 (-)
ash1l LOC108272684,LOC108437921,LOC106588182 coding downstream 227439 12860573 ~ 12899960 (-)
lrrc71 lrrc71 coding downstream 271907 12838204 ~ 12855492 (-)
trim46b LOC108272350,LOC108437912,LOC107589413,LOC107693334,LOC107750805 coding upstream 281401 13409057 ~ 13443086 (-)
chrna11 si:ch211-39a7.1,LOC108273254,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611 coding upstream 362293 13489949 ~ 13526100 (-)
LOC113535306 NA coding upstream 420761 13548417 ~ 13549215 (-)
aqp10b LOC108272648,LOC108433769,LOC107599561 coding upstream 448028 13575684 ~ 13586550 (-)
hax1 hax1 coding upstream 463383 13591039 ~ 13599620 (-)
G404959 NA non-coding downstream 14758 13112433 ~ 13112641 (-)
G404956 NA non-coding downstream 20442 13106733 ~ 13106957 (-)
G404943 NA non-coding downstream 40200 13086961 ~ 13087199 (-)
G404927 NA non-coding downstream 63246 13061344 ~ 13064153 (-)
G404897 NA non-coding downstream 101942 13025247 ~ 13025457 (-)
G404997 NA non-coding upstream 12764 13140420 ~ 13140655 (-)
G405032 NA non-coding upstream 90623 13218279 ~ 13218480 (-)
G405144 NA non-coding upstream 238781 13366437 ~ 13366776 (-)
G405206 LOC108273195,LOC108437913,LOC103394518,LOC103356295 non-coding upstream 324743 13452399 ~ 13454797 (-)
LOC113535067 NA non-coding upstream 432233 13559889 ~ 13563949 (-)
trnav-cac_26 NA other downstream 547748 12579580 ~ 12579651 (-)
trnav-aac_26 NA other downstream 548598 12578729 ~ 12578801 (-)
trnav-cac_25 NA other downstream 549739 12577588 ~ 12577660 (-)
trnav-aac_25 NA other downstream 550595 12576732 ~ 12576804 (-)
trnav-aac_24 NA other downstream 552584 12574740 ~ 12574815 (-)
G404999 NA other upstream 13038 13140694 ~ 13141115 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other upstream 262260 13389916 ~ 13392833 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other upstream 414347 13542003 ~ 13544505 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other upstream 428500 13556156 ~ 13558631 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 632105 13759761 ~ 13761557 (-)

Expression


Co-expression Network