G405575


Basic Information

Item Value
gene id G405575
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14076442 ~ 14077150 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU481157
GGTCAGCACATGTAGAAATAGAAGGCAATGAAACTGTAGATAAGATGGCAAAACTGTGCCTTAAAGGACTAGAGTTTGATAGACCACTACACATGAGCAAAGTAGTGGCAAAAGTCCTGATAATACATAAAGTAAGGATTTTATGGCAAGAAATGTGGGAGAATGAGCACAAGGGGCAACACCTAGGCCATGTTCACACCTGGCACACACATGAGACCTGGGTGAACTGATCCTAATAGACAGTGCAGGTACAGGTGTGAATAGAAGGCAGATCttaataccaggtgtgaacaggacCTTATACAGGTACAGGTGGGATGGATGGGGATTGGAGGGATTATCAGAAGGCAGGATGTCATATTCACACAACTTAGAATAGGGCACACTCAGTTAAATCACTCACTTcacctaataaaaaaaagcacagctcaGGACTTTATCAACACTGTAACaattgtgctgttatgggaaaataatccacgccagGGTACTGCAGAAGCAACAGCAACGTGAGCAGCATTGTTCACAAGTACTCGAGTactttatgtacatctggaggtATAAATGCAACATTTGCTAGATGGCGCATCAGGGCCAAAACAACCCTGTCTGTCAGGTTTTCGAATCAAACTGAAAAATGTTCAGCAAATTCACACTCAGCATTGTTAAAAACTCGAGCTCTGTTCAATTTTATAACTTTCTGTTGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU481157 True 709 lncRNA 0.42 1 14076442 14077150

Neighbor

gene id symbol gene type direction distance location
ccdc126 ccdc126 coding downstream 2267 14067317 ~ 14074175 (-)
igf2bp3 igf2bp3,LOC108273237,LOC107748676,LOC107592016 coding downstream 30399 14016688 ~ 14046043 (-)
oxnad1 oxnad1 coding downstream 75777 13925835 ~ 14000665 (-)
LOC113535216 LOC108272677,LOC108433755,LOC107727734,LOC103040142,LOC107754022,LOC107549876,LOC107563022,LOC107666341,LOC107665170 coding downstream 271854 13782962 ~ 13804588 (-)
pbxip1a LOC108273227 coding downstream 304909 13761655 ~ 13771533 (-)
mpp6b mpp6,LOC108272353,LOC107592011 coding upstream 62794 14139944 ~ 14168596 (-)
dazl dazl coding upstream 95684 14172834 ~ 14195466 (-)
tbc1d5 tbc1d5,LOC107592018,LOC107739565,LOC107748680 coding upstream 118805 14195955 ~ 14218170 (-)
arid1ab LOC108272722,LOC108415569 coding upstream 243715 14320865 ~ 14388466 (-)
nudc nudc,LOC107689540,LOC107700719 coding upstream 363650 14440800 ~ 14452371 (-)
G405420 NA non-coding downstream 204014 13815898 ~ 13872428 (-)
G405419 NA non-coding downstream 261550 13808483 ~ 13814892 (-)
G405386 NA non-coding downstream 340694 13735536 ~ 13735748 (-)
G405368 NA non-coding downstream 369900 13655405 ~ 13706542 (-)
G405353 NA non-coding downstream 470550 13601027 ~ 13605892 (-)
LOC117596429 NA non-coding upstream 106336 14183486 ~ 14191755 (-)
G405681 NA non-coding upstream 179374 14256524 ~ 14329200 (-)
G405701 NA non-coding upstream 236589 14313739 ~ 14314834 (-)
G405707 NA non-coding upstream 301742 14378892 ~ 14385650 (-)
G405900 NA non-coding upstream 541499 14618649 ~ 14686310 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 314885 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 517811 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 531937 13542003 ~ 13544505 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other downstream 683609 13389916 ~ 13392833 (-)
G404999 NA other downstream 935327 13140694 ~ 13141115 (-)
npy npy other upstream 4222 14081372 ~ 14083846 (-)
G405588 NA other upstream 37469 14114619 ~ 14119658 (-)
tpbga LOC108272337 other upstream 398326 14475476 ~ 14479077 (-)
G405961 NA other upstream 890326 14967476 ~ 15013988 (-)

Expression


Co-expression Network