G405906


Basic Information

Item Value
gene id G405906
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14644853 ~ 14966111 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU481553
TAGATAAAGACATGTATAGTATTGTAGTACTGAACtgtaaaacataattatattgTGCGCTACATGTTCCCacggggcagtcgtggcctaatggatagagagtcggacttgcaacccgaaggtgaacctgaaggttgtgggtttgagtctcgggtctagcagggattgtaggtggggggagtgaatgaccagcgctctctcccaccctcaataccaccactgaggtgagacccctgagcaaggcaccgaacccccaactgctccccagcacttggatgggttaaatgcagagcacaaattccgagtatgggtcaccatacatggccacaagtcacttca

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU481553 True 339 lncRNA 0.50 2 14644853 14966111

Neighbor

gene id symbol gene type direction distance location
ctdp1 ctdp1,LOC107552301,LOC107550068 coding downstream 7520 14622681 ~ 14637333 (-)
zbtb22b zbtb22b,LOC108272665,LOC101073910,LOC103355711,LOC104955937,LOC101155366 coding downstream 30092 14598495 ~ 14614761 (-)
epb41a epb41,LOC107712606 coding downstream 58611 14552044 ~ 14586242 (-)
trnat-ugu_15 NA coding downstream 98675 14546106 ~ 14546178 (-)
trnat-ugu_14 NA coding downstream 101564 14543217 ~ 14543289 (-)
LOC113534955 LOC108272455,LOC108433744,LOC107753802 coding upstream 107558 15073669 ~ 15136790 (-)
atp1a3a LOC108433742,LOC108272709,LOC102313318,LOC102779181,LOC103362864,LOC100707930 coding upstream 199077 15165188 ~ 15206951 (-)
G405707 NA non-coding downstream 259203 14378892 ~ 14385650 (-)
G405681 NA non-coding downstream 315653 14256524 ~ 14329200 (-)
G405701 NA non-coding downstream 330019 14313739 ~ 14314834 (-)
LOC117596429 NA non-coding downstream 453098 14183486 ~ 14191755 (-)
G405575 NA non-coding downstream 567703 14076442 ~ 14077150 (-)
G405967 NA non-coding upstream 52575 15018686 ~ 15019240 (-)
G405976 NA non-coding upstream 82610 15048721 ~ 15049178 (-)
G405981 NA non-coding upstream 85578 15051689 ~ 15051897 (-)
G405982 NA non-coding upstream 85844 15051955 ~ 15052188 (-)
G405983 NA non-coding upstream 86476 15052587 ~ 15052844 (-)
tpbga LOC108272337 other downstream 165776 14475476 ~ 14479077 (-)
G405588 NA other downstream 525195 14114619 ~ 14119658 (-)
npy npy other downstream 561007 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 883296 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 1086222 13556156 ~ 13558631 (-)
G405961 NA other upstream 1365 14967476 ~ 15013988 (-)

Expression


Co-expression Network