G406078


Basic Information

Item Value
gene id G406078
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 15256802 ~ 15257054 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU481740
TTTGGTCAAAgtcaccaatgatttgttgatgGCTTCTGACTCTGGTACAACATCTATTCTTATTCTTCTTGATCTAAGAGCCGCTTTTGATACTGTTGATCACAGTCTATTACTTACTCATCTTGAAAGAGTGTTTGGTGTGTCTGGGACTGCCTTGAAGTGGTTGAGGTCTTATTTTACTGACCGCTCCCAGTTTGTTTCTATGGGTGGTTATAGGTCTGAGATTAGCTCtgtctccactggtgttcctcAG

Function

GO:

id name namespace
GO:0048882 lateral line development biological_process
GO:0048884 neuromast development biological_process
GO:0048925 lateral line system development biological_process

KEGG:

id description
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU481740 True 253 lncRNA 0.42 1 15256802 15257054

Neighbor

gene id symbol gene type direction distance location
atp1a3a LOC108433742,LOC108272709,LOC102313318,LOC102779181,LOC103362864,LOC100707930 coding downstream 49851 15165188 ~ 15206951 (-)
LOC113534955 LOC108272455,LOC108433744,LOC107753802 coding downstream 120012 15073669 ~ 15136790 (-)
cica LOC108272903,LOC108433746 coding downstream 291991 14931143 ~ 14964811 (-)
si:ch211-264f5.6 NA coding downstream 338885 14897610 ~ 14917917 (-)
gnb3b gnb3b,LOC108433753,LOC107666347,LOC107665150,LOC107753988,LOC107727720,LOC107563025 coding downstream 389204 14860254 ~ 14867598 (-)
G406054 NA non-coding downstream 49271 15207201 ~ 15207531 (-)
G405983 NA non-coding downstream 203958 15052587 ~ 15052844 (-)
G405982 NA non-coding downstream 204614 15051955 ~ 15052188 (-)
G405981 NA non-coding downstream 204905 15051689 ~ 15051897 (-)
G405976 NA non-coding downstream 207624 15048721 ~ 15049178 (-)
G406079 NA non-coding upstream 671 15257725 ~ 15257945 (-)
G406083 NA non-coding upstream 14619 15271673 ~ 15272249 (-)
G406086 NA non-coding upstream 15954 15273008 ~ 15273429 (-)
G405961 NA other downstream 242814 14967476 ~ 15013988 (-)
tpbga LOC108272337 other downstream 777725 14475476 ~ 14479077 (-)
G405588 NA other downstream 1137144 14114619 ~ 14119658 (-)
npy npy other downstream 1172956 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 1495245 13759761 ~ 13761557 (-)

Expression


Co-expression Network