dazl (dazl)


Basic Information

Item Value
gene id dazl
gene name dazl
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14172834 ~ 14195466 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928099.2
gagcgAGCTGGCCCTTGGTGTACACAGGAACCCTCCCTGATTGAATGGCTGTAGATCAGTCGGGAAGCTGGAGGCTGATTAGTGCCCAGGTGTAGGCGCCTGTTCCTCCTCCATTTTCTCACAACGCTTGAAAGAAACGGGAAGGCAATTTGGGCAGACATtaatttattcacttattttaaCGGTTTTAGACATGGATCTCCAGAAACAGCGGCATGGCGTGGCGATGTCTAACGGCTTCATCTTACCGGAGGGCAAAATGACGCCCAACACACTGTTTGTGGGAGGCATAGACATGAAGGTTGAAGAGAATGAGATCCGAGACTTCTTCGCTCGGTACGGCGCAGTGAAGGAGGTGAAGATCATCACCTACAGGGGTGGAATCTGCAAAGGTTATGGTTTTGTTTACTTCAGCGAGGATGTCGACATCCAGACTATCGTTGAACAACAGGTCACTTTTAAAGGAAAGAAACTCAAACTGGGCCCTGCCATCATGAAGGAGCGGAGTTCTCGTGAGTCAGGTTTCCAAGGTTCTGTCCAGTCACCTTTGATTGGTCCATCACAGTGGGTAAGCCCCTCCCCCTGTGTGTACTGTACCTGCTGCCCTCCCAGCCTGGTTACACCCACTGTGCTCAGTGGAGGTGCACAGTACCTGCAGccaTATTCTTACCCAAGTTTTCCAGGAGTAATGATCCCTCAGATGCCTATGAATTATGCACAGACAGCCTACGCCTACCCGTACTCCCTGCCACAGTGGTGTGGTGACCAGAGGACACGGTTTATGAATCAgAACTTTGTGGACTGTGGAGTCCAGACGTTGCTGACACTTCTGTAGTCCGGTTTAGATGTGGACTGTCTTTCCGGACCAGCACCCAAGGAAACCGAGGCTGATGTCTTCATGAAAATGACATCCAATTGTGGGAAAGCATGTTCAGCATTCTACCTCTGGTGTGACTCTGTGTTTCTGGGAACAAACGTCCCACTCTGGGTGACATGTCAGTGTGATGGCAAATCATGGTTATGTGGTCAAACTTCCAATAGAAGGCtgcatactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgactgaatacaatttacacaaatgttttTGTCAGTTTATTTGTTATTGTCCTTGCTCTGCCTTTGTCATaccaaacctttaaaaaaaaaaaaaaaagacacttttaAAATCACAAAGGTTTTTGTTTCATCTATGTTGgttattttaatgtttgcaCCTCCCTCGTTCTCCAAATGCTTTTTGATCTCAAGGGGAGGCGACTGTTCTTGAGGCTTCTGTAAATTGTTCAGCAAGTTCAGTTCAgcaaattttataattatatttgttGCATAATCTCATTCATGCTGGCAAAGCTCTATTGATTAACTTCTCAAACCTCATGTCACACATTGTAAGCACTGtcctggttttatttttatttttatatatttattatttattttgaacagGGTTAGGGATTCCAGTGTTAGTATTTTGAATATTTCTCAATGGagttgaggttttttttgggggggtttaTTTGGCTTCATGTGGCTTTGCCCATTTGATtaacatattataataattattataagttATATTGGCTTGACTCTTAATTTCAGATCAGTTGTGAAGAGaagccaggaaaaaaaatcactgcattAAATACCAATGATTGATTGAAaagaaacttttaaaaactTGTTCTGTAAAAATGCTCAGTCACGCAATGGGTTTGGCCAGTTTTAATTCACTAAGTAATGATGGAATAACAATGCTTCACACGTTCACTGGTTGATACTGATGTTTGatatttgtgggttttttttatttaaaggttcATTGTGCTTTTGTCTTCTTTCACTTTGTTAACGGTGGTTTTCTTCAcaagaattgttttatttaaaaataatagggTGATCTGTCTTGAATGGTGAGATTTGCACACGTCATTTTCTTATGGCTGTAACAGATTGCAATACCAACCTAAATAGTTGCTGGTAAGCCATAGGTGTTGAACACTATATTGTTAGCAAACACTTTTATGGAGCCTTTGGCATCTGATGGATTATTTCCTCTTTACATCTCCCATGGCCTCATAAGAACTGTAGTTTCTACTCTGGTTGATGGCATTGGTCGATCACTATTCAGTTTCTTATGTATACTAGTTTAACATAAAAGGTTTGGTGTCTTTTGTCttgtttataaagaaataaagttgaagttaaataaaa

Function

symbol description
dazl Enables mRNA 3'-UTR binding activity; sequence-specific DNA binding activity; and translation activator activity. Acts upstream of or within 3'-UTR-mediated mRNA stabilization and negative regulation of gene silencing by miRNA. Located in cytoplasm. Is expressed in blastodisc; gonad; unfertilized egg; and yolk. Orthologous to several human genes including DAZL (deleted in azoospermia like).

NR:

description
deleted in azoospermia-like

GO:

id name namespace
GO:0045727 positive regulation of translation biological_process
GO:0048477 oogenesis biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0007283 spermatogenesis biological_process
GO:0060965 negative regulation of gene silencing by miRNA biological_process
GO:0070935 3'-UTR-mediated mRNA stabilization biological_process
GO:0045495 pole plasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008494 translation activator activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG:

id description
K24980 DAZ; deleted in azoospermia protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928099.2 True 2240 mRNA 0.41 10 14172834 14195466

Neighbor

gene id symbol gene type direction distance location
mpp6b mpp6,LOC108272353,LOC107592011 coding downstream 4238 14139944 ~ 14168596 (-)
ccdc126 ccdc126 coding downstream 98659 14067317 ~ 14074175 (-)
igf2bp3 igf2bp3,LOC108273237,LOC107748676,LOC107592016 coding downstream 126791 14016688 ~ 14046043 (-)
oxnad1 oxnad1 coding downstream 172169 13925835 ~ 14000665 (-)
LOC113535216 LOC108272677,LOC108433755,LOC107727734,LOC103040142,LOC107754022,LOC107549876,LOC107563022,LOC107666341,LOC107665170 coding downstream 368246 13782962 ~ 13804588 (-)
tbc1d5 tbc1d5,LOC107592018,LOC107739565,LOC107748680 coding upstream 489 14195955 ~ 14218170 (-)
arid1ab LOC108272722,LOC108415569 coding upstream 125399 14320865 ~ 14388466 (-)
nudc nudc,LOC107689540,LOC107700719 coding upstream 245334 14440800 ~ 14452371 (-)
kdf1b LOC108273298 coding upstream 264926 14460392 ~ 14470818 (-)
tmem222b tmem222,tmem222b,LOC108273317,LOC103043641,LOC105903612,LOC107550652,LOC107754919 coding upstream 286471 14481937 ~ 14491263 (-)
G405575 NA non-coding downstream 95684 14076442 ~ 14077150 (-)
G405420 NA non-coding downstream 300406 13815898 ~ 13872428 (-)
G405419 NA non-coding downstream 357942 13808483 ~ 13814892 (-)
G405386 NA non-coding downstream 437086 13735536 ~ 13735748 (-)
G405368 NA non-coding downstream 466292 13655405 ~ 13706542 (-)
G405681 NA non-coding upstream 61058 14256524 ~ 14329200 (-)
G405701 NA non-coding upstream 118273 14313739 ~ 14314834 (-)
G405707 NA non-coding upstream 183426 14378892 ~ 14385650 (-)
G405900 NA non-coding upstream 423183 14618649 ~ 14686310 (-)
G405901 NA non-coding upstream 423872 14619338 ~ 14654751 (-)
G405588 NA other downstream 53176 14114619 ~ 14119658 (-)
npy npy other downstream 88988 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 411277 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 614203 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 628329 13542003 ~ 13544505 (-)
tpbga LOC108272337 other upstream 280010 14475476 ~ 14479077 (-)
G405961 NA other upstream 772010 14967476 ~ 15013988 (-)

Expression


Co-expression Network