s100s (s100s,LOC108272970,LOC108433762,LOC103039105,LOC107716593,LOC107670010,LOC107559723)


Basic Information

Item Value
gene id s100s
gene name s100s,LOC108272970,LOC108433762,LOC103039105,LOC107716593,LOC107670010,LOC107559723
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 13746878 ~ 13750502 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928110.2
CAGGAGTGAAGGATATTTAAGACCTGGAGATGCTCTCTCCTCATCCGtttctttgcttctttctaTCAGTCTGCATCTCTGGCTCTTTGTCACAGACAAAGGAGGCTCTTCAGCAACACTCAGTAGCTTGGCAAGCCTGGAGACAGAAGAACCAAGATGCCACGCTCAAATTGTGATGTCATGGCTAAAGAACCAAGCACTAACCTGGAGAGCGCCATGCAGATGCTCATCAAGACCTTCCATAAGTACTCAGGGAAAGAAGGGGACAAATACACACTTAGCCGAGGGGAGTTAAGAGAACTACTGACAGAGGAATTGGGAAACTATCTAGGGAATGCACAAGACAAGGATGCCGTGGAGCGAGTGATGAGTGATCTGGACGCCAATAATGATGGTGAGGTGGACTTCACTGAGTTCATCATCCTAATGGGTGCACTCACCGTGGCCTGCAATGACTTCTTCCTTGACAGCCCACCACCAAAGAACAAGCCTGAGCCAAAGTCAGATGCaaaggaaggagagaagaaagagtaATGATGGGATGAGAATGGGAGCATGAGAGAGAAATGTATCAGGTGGTTTCTGTAACCAGGAGTGAACGTCTGAGGAGAAACCCATCTGTTTTGAGCTATTAATTACTTGAAATTTCCAATTATTATGCTTGTCATTACTCTGTGCCCTAAACACATTGAACGCTTTCATTAATTTCAGGAACATATTTGTCCAACCCTAATCTAATTCCCCAGGTAAGCAGAAAAACAACATGCAGCTGTAGAcacttttgtttaaattaaatcctCCTGATGGTACTAAGATACATTTCTTCCATTTTGATGTACATTTTGTGATTTTAGGACCTGATTGTACTAAAGTTCTCCATTAATTTGAAGAGttctaaatacattaaaaaatgcatCTAGTACCCTGACAAAATATCACTGAAACATTCCTGTAATTAACTTGAGGAAACCTATGAAATGGTTAGGATGAAGGGAGGGGTTAACTGTAAGCTCATTTATAACACACGCATTATTAAAAACGTCACCAGTGTTGAACACTTCAATGTGTTTTGCTTCTTTTCAAGGCACCTATTTTGTAGCCTGTTTTGGTAAGTGATATGTATCTTTAtcattacaataaatatg
>XM_026928111.2
TCCTCATCCGtttctttgcttctttctaTCAGTCTGCATCTCTGGCTCTTTGTCACAGACAAAGGAGGCTCTTCAGCAACACTCAGCTTGGCAAGCCTGGAGACAGAAGAACCAAGATGCCACGCTCAAATTGTGATGTCATGGCTAAAGAACCAAGCACTAACCTGGAGAGCGCCATGCAGATGCTCATCAAGACCTTCCATAAGTACTCAGGGAAAGAAGGGGACAAATACACACTTAGCCGAGGGGAGTTAAGAGAACTACTGACAGAGGAATTGGGAAACTATCTAGGGAATGCACAAGACAAGGATGCCGTGGAGCGAGTGATGAGTGATCTGGACGCCAATAATGATGGTGAGGTGGACTTCACTGAGTTCATCATCCTAATGGGTGCACTCACCGTGGCCTGCAATGACTTCTTCCTTGACAGCCCACCACCAAAGAACAAGCCTGAGCCAAAGTCAGATGCaaaggaaggagagaagaaagagtaATGATGGGATGAGAATGGGAGCATGAGAGAGAAATGTATCAGGTGGTTTCTGTAACCAGGAGTGAACGTCTGAGGAGAAACCCATCTGTTTTGAGCTATTAATTACTTGAAATTTCCAATTATTATGCTTGTCATTACTCTGTGCCCTAAACACATTGAACGCTTTCATTAATTTCAGGAACATATTTGTCCAACCCTAATCTAATTCCCCAGGTAAGCAGAAAAACAACATGCAGCTGTAGAcacttttgtttaaattaaatcctCCTGATGGTACTAAGATACATTTCTTCCATTTTGATGTACATTTTGTGATTTTAGGACCTGATTGTACTAAAGTTCTCCATTAATTTGAAGAGttctaaatacattaaaaaatgcatCTAGTACCCTGACAAAATATCACTGAAACATTCCTGTAATTAACTTGAGGAAACCTATGAAATGGTTAGGATGAAGGGAGGGGTTAACTGTAAGCTCATTTATAACACACGCATTATTAAAAACGTCACCAGTGTTGAACACTTCAATGTGTTTTGCTTCTTTTCAAGGCACCTATTTTGTAGCCTGTTTTGGTAAGTGATATGTATCTTTAtcattacaataaatatgt
>XM_034301583.1
ttctttctaTCAGTCTGCATCTCTGGCTCTTTGTCACAGACAAAGGAGGCTCTTCAGCAACACTCAGCATGGCTAAAGAACCAAGCACTAACCTGGAGAGCGCCATGCAGATGCTCATCAAGACCTTCCATAAGTACTCAGGGAAAGAAGGGGACAAATACACACTTAGCCGAGGGGAGTTAAGAGAACTACTGACAGAGGAATTGGGAAACTATCTAGGGAATGCACAAGACAAGGATGCCGTGGAGCGAGTGATGAGTGATCTGGACGCCAATAATGATGGTGAGGTGGACTTCACTGAGTTCATCATCCTAATGGGTGCACTCACCGTGGCCTGCAATGACTTCTTCCTTGACAGCCCACCACCAAAGAACAAGCCTGAGCCAAAGTCAGATGCaaaggaaggagagaagaaagagtaATGATGGGATGAGAATGGGAGCATGAGAGAGAAATGTATCAGGTGGTTTCTGTAACCAGGAGTGAACGTCTGAGGAGAAACCCATCTGTTTTGAGCTATTAATTACTTGAAATTTCCAATTATTATGCTTGTCATTACTCTGTGCCCTAAACACATTGAACGCTTTCATTAATTTCAGGAACATATTTGTCCAACCCTAATCTAATTCCCCAGGTAAGCAGAAAAACAACATGCAGCTGTAGAcacttttgtttaaattaaatcctCCTGATGGTACTAAGATACATTTCTTCCATTTTGATGTACATTTTGTGATTTTAGGACCTGATTGTACTAAAGTTCTCCATTAATTTGAAGAGttctaaatacattaaaaaatgcatCTAGTACCCTGACAAAATATCACTGAAACATTCCTGTAATTAACTTGAGGAAACCTATGAAATGGTTAGGATGAAGGGAGGGGTTAACTGTAAGCTCATTTATAACACACGCATTATTAAAAACGTCACCAGTGTTGAACACTTCAATGTGTTTTGCTTCTTTTCAAGGCACCTATTTTGTAGCCTGTTTTGGTAAGTGATATGTATCTTTAtcattacaataaatatgtC
>XM_034301584.1
tttctaTCAGTCTGCATCTCTGGCTCTTTGTCACAGACAAAGGAGGCTCTTCAGCAACACTCAGtttagATGAGAAAACTTGTAAACCTATGAAGAATtatggagaaaatgtgatgtttGGTCCATTTTAGCATGGCTAAAGAACCAAGCACTAACCTGGAGAGCGCCATGCAGATGCTCATCAAGACCTTCCATAAGTACTCAGGGAAAGAAGGGGACAAATACACACTTAGCCGAGGGGAGTTAAGAGAACTACTGACAGAGGAATTGGGAAACTATCTAGGGAATGCACAAGACAAGGATGCCGTGGAGCGAGTGATGAGTGATCTGGACGCCAATAATGATGGTGAGGTGGACTTCACTGAGTTCATCATCCTAATGGGTGCACTCACCGTGGCCTGCAATGACTTCTTCCTTGACAGCCCACCACCAAAGAACAAGCCTGAGCCAAAGTCAGATGCaaaggaaggagagaagaaagagtaATGATGGGATGAGAATGGGAGCATGAGAGAGAAATGTATCAGGTGGTTTCTGTAACCAGGAGTGAACGTCTGAGGAGAAACCCATCTGTTTTGAGCTATTAATTACTTGAAATTTCCAATTATTATGCTTGTCATTACTCTGTGCCCTAAACACATTGAACGCTTTCATTAATTTCAGGAACATATTTGTCCAACCCTAATCTAATTCCCCAGGTAAGCAGAAAAACAACATGCAGCTGTAGAcacttttgtttaaattaaatcctCCTGATGGTACTAAGATACATTTCTTCCATTTTGATGTACATTTTGTGATTTTAGGACCTGATTGTACTAAAGTTCTCCATTAATTTGAAGAGttctaaatacattaaaaaatgcatCTAGTACCCTGACAAAATATCACTGAAACATTCCTGTAATTAACTTGAGGAAACCTATGAAATGGTTAGGATGAAGGGAGGGGTTAACTGTAAGCTCATTTATAACACACGCATTATTAAAAACGTCACCAGTGTTGAACACTTCAATGTGTTTTGCTTCTTTTCAAGGCACCTATTTTGTAGCCTGTTTTGGTAAGTGATATGTATCTTTAtcattacaataaatatgtC

Function

symbol description
s100s Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be active in cytoplasm. Is expressed in several structures, including digestive system; heart; integument; otic vesicle; and sensory system. Orthologous to several human genes including S100A2 (S100 calcium binding protein A2); S100A4 (S100 calcium binding protein A4); and S100A5 (S100 calcium binding protein A5).

NR:

description
PREDICTED: protein S100-A1-like isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928110.2 True 1145 mRNA 0.41 4 13746880 13750502
XM_026928111.2 False 1106 mRNA 0.41 4 13746879 13750465
XM_034301583.1 False 1035 mRNA 0.40 3 13746878 13750446
XM_034301584.1 False 1099 mRNA 0.40 4 13746878 13750443

Neighbor

gene id symbol gene type direction distance location
pygo2 LOC108273220,LOC108433763,LOC103036475,LOC107693316,LOC107729895 coding downstream 12117 13729127 ~ 13734761 (-)
cgnb LOC108272895 coding downstream 20723 13689122 ~ 13726155 (-)
tuft1b LOC108272645 coding downstream 68587 13646267 ~ 13678291 (-)
ubap2l ubap2l,LOC107599491 coding downstream 108753 13603327 ~ 13638125 (-)
hax1 hax1 coding downstream 147258 13591039 ~ 13599620 (-)
s100u LOC108272971,LOC108433761 coding upstream 2311 13752813 ~ 13758428 (-)
pbxip1a LOC108273227 coding upstream 11153 13761655 ~ 13771533 (-)
LOC113535216 LOC108272677,LOC108433755,LOC107727734,LOC103040142,LOC107754022,LOC107549876,LOC107563022,LOC107666341,LOC107665170 coding upstream 32460 13782962 ~ 13804588 (-)
oxnad1 oxnad1 coding upstream 175333 13925835 ~ 14000665 (-)
igf2bp3 igf2bp3,LOC108273237,LOC107748676,LOC107592016 coding upstream 266186 14016688 ~ 14046043 (-)
G405386 NA non-coding downstream 11130 13735536 ~ 13735748 (-)
G405368 NA non-coding downstream 40336 13655405 ~ 13706542 (-)
G405353 NA non-coding downstream 140986 13601027 ~ 13605892 (-)
LOC113535067 NA non-coding downstream 182929 13559889 ~ 13563949 (-)
G405206 LOC108273195,LOC108437913,LOC103394518,LOC103356295 non-coding downstream 292081 13452399 ~ 13454797 (-)
G405419 NA non-coding upstream 57981 13808483 ~ 13814892 (-)
G405420 NA non-coding upstream 65396 13815898 ~ 13872428 (-)
G405575 NA non-coding upstream 325940 14076442 ~ 14077150 (-)
LOC117596429 NA non-coding upstream 432984 14183486 ~ 14191755 (-)
G405681 NA non-coding upstream 506022 14256524 ~ 14329200 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 188247 13556156 ~ 13558631 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other downstream 202373 13542003 ~ 13544505 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other downstream 354045 13389916 ~ 13392833 (-)
G404999 NA other downstream 605763 13140694 ~ 13141115 (-)
trnav-cac_26 NA other downstream 1167227 12579580 ~ 12579651 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 9259 13759761 ~ 13761557 (-)
npy npy other upstream 330870 14081372 ~ 14083846 (-)
G405588 NA other upstream 364117 14114619 ~ 14119658 (-)
tpbga LOC108272337 other upstream 724974 14475476 ~ 14479077 (-)
G405961 NA other upstream 1216974 14967476 ~ 15013988 (-)

Expression


Co-expression Network