gnb3b (gnb3b,LOC108433753,LOC107666347,LOC107665150,LOC107753988,LOC107727720,LOC107563025)


Basic Information

Item Value
gene id gnb3b
gene name gnb3b,LOC108433753,LOC107666347,LOC107665150,LOC107753988,LOC107727720,LOC107563025
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 14860254 ~ 14867598 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928308.2
gaaaaagagtgtgtTTTTCACAGGCAAGTTGCCACCAGTCTCTTAGGGGAACGCATGAAAGGTAGAGTTTGAGAGAACTCAGAGGACAGTCCATTGGATTGAGGTGTGCTGAAAAGTGGGGCTTCAGTTAAGAAGAGAAACACTAATTCTTGGGGAATAACGGAGAACTGGCACTTTGTGTTGAAAAAAGGTCACCTTGTATCCATTCATTCCCATCAGTAATTACAGCCGTCAACTGCTGCCATGGGTGAAATGGAGAAGATGAAAAAGGAGGCTGAAACCCTGAAGACACAGATTGAGGCAGCACGCAAGGCAGCTCATGACACAGACTTATCTGCTGCTGCCTCTGGAGTGGCAGCTACGCCCACCATACAGCTGAAGACCAGGAAGACACTGAAAGGCCACCTGGCCAAAATCTATGCCCTGCACTGGGCCACAGATAGCAGGCTAATGGTCAGTGCATCACAGGATGGAAAACTCCTTATTTGGGATACCCACTCAGGAAACAAGATTAATGCGGTTCCTCTGAAGTCCTCATGGGTGATGACCTGCGGATATTCCCCCTCTGGAAACTTCGTGGCCAGTGGTGGTCTCGACAACATGTGCACCATATACAACTTGAAGACGCCTATCGTTAAGATTGTGAAAGAATTAGACGCACACACGGGTTACCTCTCCTGTGCTCGCTTTCTAAATGACAATGAAATCCTCACTTCCTCCGGTGACACCACCTGTGCACTGTGGGATATAGAGTCTGGCAAGCAGAAGACCATCTTTCTTAACCATGTGGGTGACTGTATGTGTCTGGCTCTATCCCCTGATATGAACATGTTCATTTCTGGAGCCTGTGACTCGTTGGCCAAACTGTGGGACATCAGGGACGGCAAATGCAAACAGACATTCCAGGGACACACCAGCGATGTCAATGCCATTGCATTCTTGAATAATGGAAACGCTTTTGTGACTGGCTCAGACGACTGTACCCTCAAGATGTTTGACATCCGCTCTGATCAGGAAGTGATGTGCTACGAGGATGGCCAAATGAACAGTGCTGTGACGTCACTGGCCCTGTCTATTTCAGGCCGCCTCATATTTGCTGGATATGACAACTTTAACTGCAACATCTGGGACTCGCTGAAGGGCGAGAAAGTTGGAGTGCTGTCTGGACATGACAACAGAGTGAGTTGCACCGGAGTACCATTGGATGGCATTTGTGTGTGCACTGGCTCATGGGACAGCTTTCTAAAAGTCTGGAACTGATCTGGTCGAACCACCCCAAAACggggaggaggaggggaagcaaatgaaagaaacagaaaggatAGAGTTGGAGGGGAGAAGTAGAGAGACTAAGAAAGAAGAAAGCCATGAAAAAGATCATGGCACCTGTCAGACATTAATGTCACAAAaccctttctctccctgtctctctttttctcctacATATGAATACTGGGAAATTAATGGAGTAATAGAAATGTCCTCTCAAACACCATAAGATGTAGCATATTAACACGAGAAGTGAAATGTATTATCACCTCATGACCAAGATCAAAAATAGCATAGGCTTAAGCTCATATgggaaaatgataaatgttaaatatattcattaatattttattgtacttGGTAAAACTGATAGGGTTTTGAAAACAAATCATGACTAGGGACAGGAACAGAATAATAGAGTAACTGTCAAATTACAGAAACTTATAGACTTTATTACAGACTTCGGTTAGATGGaagtatttatgtatataataaattacaAGAAAACTGCAGAGTTAATATACACTGACTTttatcacacacagacaatgtGCATGTCTGTCTAAAGCATGGATATGTCTACGATTTTGAAATGCAGCTTGTGTGGGCCTTTTGTCTTCACTCAGGTGAACCCAAGGTGTGACACCTAATAAAACATTACTCAGTCAATTACTTTCTTTCATGTACTTTAACCTCCAGATCATGTTTGTTTATGACTAAATGCTTCTGCTGCATAGTCACCTTCATCCAATTTCACACCTACATAGTTATGTATTTCTCTTACGTTGCCACAGAGTctcttaaaaaata

Function

symbol description
gnb3b Predicted to enable signaling receptor complex adaptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in cytoplasm. Is expressed in epiphysis; eye; pineal complex; retina; and retinal cone cell. Human ortholog(s) of this gene implicated in artery disease (multiple); congenital stationary night blindness 1H; familial hyperlipidemia; mental depression; and type 2 diabetes mellitus. Orthologous to human GNB3 (G protein subunit beta 3).

NR:

description
PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3-like

GO: NA

KEGG:

id description
K04536 GNB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928308.2 True 2079 mRNA 0.43 9 14860254 14867598

Neighbor

gene id symbol gene type direction distance location
daxx daxx coding downstream 190214 14652344 ~ 14670040 (-)
ctdp1 ctdp1,LOC107552301,LOC107550068 coding downstream 222921 14622681 ~ 14637333 (-)
zbtb22b zbtb22b,LOC108272665,LOC101073910,LOC103355711,LOC104955937,LOC101155366 coding downstream 245493 14598495 ~ 14614761 (-)
epb41a epb41,LOC107712606 coding downstream 274012 14552044 ~ 14586242 (-)
trnat-ugu_15 NA coding downstream 314076 14546106 ~ 14546178 (-)
si:ch211-264f5.6 NA coding upstream 30012 14897610 ~ 14917917 (-)
cica LOC108272903,LOC108433746 coding upstream 63545 14931143 ~ 14964811 (-)
LOC113534955 LOC108272455,LOC108433744,LOC107753802 coding upstream 206071 15073669 ~ 15136790 (-)
atp1a3a LOC108433742,LOC108272709,LOC102313318,LOC102779181,LOC103362864,LOC100707930 coding upstream 297590 15165188 ~ 15206951 (-)
G405924 LOC108272765 non-coding downstream 53395 14805181 ~ 14806859 (-)
G405930 LOC108272765,LOC107694750,LOC107751686,LOC107577321,LOC107694162 non-coding downstream 106962 14749754 ~ 14753292 (-)
G405929 NA non-coding downstream 111807 14746848 ~ 14748447 (-)
G405909 NA non-coding downstream 139348 14688023 ~ 14720906 (-)
G405917 NA non-coding downstream 155942 14700268 ~ 14704312 (-)
G405967 NA non-coding upstream 151088 15018686 ~ 15019240 (-)
G405976 NA non-coding upstream 181123 15048721 ~ 15049178 (-)
G405981 NA non-coding upstream 184091 15051689 ~ 15051897 (-)
G405982 NA non-coding upstream 184357 15051955 ~ 15052188 (-)
G405983 NA non-coding upstream 184989 15052587 ~ 15052844 (-)
tpbga LOC108272337 other downstream 381177 14475476 ~ 14479077 (-)
G405588 NA other downstream 740596 14114619 ~ 14119658 (-)
npy npy other downstream 776408 14081372 ~ 14083846 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other downstream 1098697 13759761 ~ 13761557 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other downstream 1301623 13556156 ~ 13558631 (-)
G405961 NA other upstream 99878 14967476 ~ 15013988 (-)

Expression


Co-expression Network