lrrc71 (lrrc71)


Basic Information

Item Value
gene id lrrc71
gene name lrrc71
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12838204 ~ 12855492 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928427.2
CTATGGAAGTGTAGtctattaataaacaaaacgGGGTGTATAAGTACTTTTATACACATCAATAACAAGAATAAGATGAATAAGAGTTTTCCTGCATCATTATAGTACGTTCAACGTTGTTAAATAGGCTtgtgtatgaaataaataattattaaaaaataaaaaaagcaatgaaaaaaagGATGGAAAAAGTCAGCAAGGAGAAAGGGACTTCTGGAGTTCTGGAGGAAGAGCCTTCACACACTGCAGGACTGAATATACAAGACAAACGCCCAGTCCAGAGCGTAGATGACTACGAGTGCTCAGGCAATCTGGAAGTGGATTTCCCAGAGCTGTGTGCTGTAGTCGGCTTGAGGGAAATCCCTGACGTGAGACCACTAACAGCAGCATCACCTTCCACAGAAAGAACAACGGAGAGTAGCCAAGAAGAGATTTTCTCTGAAAGCTGTATGGCAACCTGGTCTCCTAAACCCTGCCTTCACATAGAACTGGAGAGCGAGGACTCACGGAGCGTAAAAAGAGTTCGAATATCTGGATGGAGGGTGGACGAGGCGATGGCTCGAGTGCTGAGTAAGACGTTACCATCCCTCAGCAATCTGCAGAGCCTAGAGATGTGGCGGATTGGATTGACTGACCCCATTCTGACCTCCTTAAAGAACACAATTTCTATGTGCTCAAAGCTCAGGACAGTTATTTTGGAGGGAACCCCTATTCCAGAAAACAGTTACCATATTCTCATGGGAGAGGACAGTATGATAACACACCTATCACTGCGAAACAATCGCATAGGAGAAGAGGGAGCACGTCTGATTGGTTTAGCGCTGTCCAAGAATCTCCTGTCACTCAACATGGCCTTCAACGCTGTTGGTGATGCGGGTGCTATTTATCTCGCCCAGGGGTTGCGTCTCAATCGCACTTTGTTGTATCTCTCCCTGGCCAGCAATCACATAGGCGATGTAGGAGCAGCTCATCTGGCTCAGGTGCTTGGCAGATTTGCTCTGACACATGAAGAAATAGTCGAGAGGAGGAGGCTGTTGAAAAGGAAGGACCAACTGGATGCCACCAGAAAGGATGAGAAGCCTCCAACCAATCAGACATTGACAACaacaggaaagaaagaggaCCCCAAAGTGGAAAAGAAGAGAACCTCAGATACTAAGATGCCACAAGGCAAAGGTGGAAAATCAGATGGAAAAGACAAGCATCTTTCAGTGAAGGAACAAGAGaCAGAAGAAGTGGTTGAGACACAAAGCCCTTTGCTGAATCCTGCCATACAGAACATTGGAGGGAAAGTGATTTATCCAGGCAACACAACACTTCTGTCTCTAAACTTGTCAGGCAATAAACTGACACAGCAGTCACTTCAGATGTTCCTGTCATCTGTGGTGTGTCAAGGGAAAAGAGGTCTCCAGCATATTTCCCTTAATaggaaCAGCTTTCCTCCAGACTGTGAGGTCTTCCTGAAACTACAGGAAATGATGTCACTTAAGGATCCTCTAAACCGAGCCACCTCAGCTCAGGTGGACGCTGAGCAGGGACAGGCAGCATAGTTACCTTTTACGCCTCAGAATTTTACTTTACAATTATCTTTTTTATGCTCTAACATCATGTGTTTTTGTAGTTGCCtcctaagtaaggaataaatcacagtGGGGCGtgctgtgatagaaaaataatcaacgacgtggtggtgtgatggtgtgaagCAAAGGGGAGGGTCATTACcagcccaaagttgattattttctaataaaagcacatcccaacatgttttattcctcttacaccaccatattttgttaataattttgtgTTGAGTCGTATCACGTCACACACATATGAGTAGAGAGAGGAAGTTCACTTGGATTACCACAAGAGTGTAAAGCCAGACTGAGTTGGGCTTCACTGATCGCtactgttcccaacgaccaatcactgatcactactgtccCCCATGACCAATCACGGCTCGCTActtttcccaacaaccaatcactcatcacaaTTGTTCCCAGAAGTAAAAACTTAGCCTGTCTATGCTATATGTGTTCTTCCGAGAAATGTAACACtgaaattgtaaaaatatttgcaatttatttattattgcaaaTAATCACAGATCACCATTGCTCACATCAACCGATTACTGATTACTGCTGTTCCGAACAATCGATCACGGATCGCtgttgttcccaacaaccagtcACTGCTCACtactgttcccaacgaccaatcagtTATCAACCGATCAAAATACTTTTGATAGACAGTATAGTATTTCTAAAATGTGGAAAGAGTTAGTTTGTGGTGCCGTGACCAAAGTTGACTCTTTTTTGTGGGTTGTTTCCACTGACGTCACTGCGACCTATGcatttacccacaatgcaaaGCATTTATATCTATGTGCTCATTGTAATTCCCTAGCTAAATACCTTATGTATTAGTTCTGTCATGATAGCCTTCTTACCTGaaattcaaaatataaatttctTAAAGAAGAACTTGTTAAAACACATGAGGAAATACTCATACAAATGTCctacattcactcattcaccaAAGACgactctttctttctataagaaataaattacaatccgttattttctattctgataaaatttCTAT
>XM_034301515.1
CTATGGAAGTGTAGtctattaataaacaaaacgGGGTGTATAAGTACTTTTATACACATCAATAACAAGAATAAGATGAATAAGAGTTTTCCTGCATCATTATAGTACGTTCAACGTTGTTAAATAGGCTtgtgtatgaaataaataattattaaaaaataaaaaaagcaatgaaaaaaagGATGGAAAAAGTCAGCAAGGAGAAAGGGACTTCTGGAGTTCTGGAGGAAGAGCCTTCACACACTGCAGGACTGAATATACAAGACAAACGCCCAGTCCAGAGCGTAGATGACTACGAGTGCTCAGGCAATCTGGAAGTGGATTTCCCAGAGCTGTGTGCTGTAGTCGGCTTGAGGGAAATCCCTGACGTGAGACCACTAACAGCAGCATCACCTTCCACAGAAAGAACAACGGAGAGTAGCCAAGAAGAGATTTTCTCTGAAAGCTGTATGGCAACCTGGTCTCCTAAACCCTGCCTTCACATAGAACTGGAGAGCGAGGACTCACGGAGCGTAAAAAGAGTTCGAATATCTGGATGGAGGGTGGACGAGGCGATGGCTCGAGTGCTGAGTAAGACGTTACCATCCCTCAGCAATCTGCAGAGCCTAGAGACAGTTATTTTGGAGGGAACCCCTATTCCAGAAAACAGTTACCATATTCTCATGGGAGAGGACAGTATGATAACACACCTATCACTGCGAAACAATCGCATAGGAGAAGAGGGAGCACGTCTGATTGGTTTAGCGCTGTCCAAGAATCTCCTGTCACTCAACATGGCCTTCAACGCTGTTGGTGATGCGGGTGCTATTTATCTCGCCCAGGGGTTGCGTCTCAATCGCACTTTGTTGTATCTCTCCCTGGCCAGCAATCACATAGGCGATGTAGGAGCAGCTCATCTGGCTCAGGTGCTTGGCAGATTTGCTCTGACACATGAAGAAATAGTCGAGAGGAGGAGGCTGTTGAAAAGGAAGGACCAACTGGATGCCACCAGAAAGGATGAGAAGCCTCCAACCAATCAGACATTGACAACaacaggaaagaaagaggaCCCCAAAGTGGAAAAGAAGAGAACCTCAGATACTAAGATGCCACAAGGCAAAGGTGGAAAATCAGATGGAAAAGACAAGCATCTTTCAGTGAAGGAACAAGAGaCAGAAGAAGTGGTTGAGACACAAAGCCCTTTGCTGAATCCTGCCATACAGAACATTGGAGGGAAAGTGATTTATCCAGGCAACACAACACTTCTGTCTCTAAACTTGTCAGGCAATAAACTGACACAGCAGTCACTTCAGATGTTCCTGTCATCTGTGGTGTGTCAAGGGAAAAGAGGTCTCCAGCATATTTCCCTTAATaggaaCAGCTTTCCTCCAGACTGTGAGGTCTTCCTGAAACTACAGGAAATGATGTCACTTAAGGATCCTCTAAACCGAGCCACCTCAGCTCAGGTGGACGCTGAGCAGGGACAGGCAGCATAGTTACCTTTTACGCCTCAGAATTTTACTTTACAATTATCTTTTTTATGCTCTAACATCATGTGTTTTTGTAGTTGCCtcctaagtaaggaataaatcacagtGGGGCGtgctgtgatagaaaaataatcaacgacgtggtggtgtgatggtgtgaagCAAAGGGGAGGGTCATTACcagcccaaagttgattattttctaataaaagcacatcccaacatgttttattcctcttacaccaccatattttgttaataattttgtgTTGAGTCGTATCACGTCACACACATATGAGTAGAGAGAGGAAGTTCACTTGGATTACCACAAGAGTGTAAAGCCAGACTGAGTTGGGCTTCACTGATCGCtactgttcccaacgaccaatcactgatcactactgtccCCCATGACCAATCACGGCTCGCTActtttcccaacaaccaatcactcatcacaaTTGTTCCCAGAAGTAAAAACTTAGCCTGTCTATGCTATATGTGTTCTTCCGAGAAATGTAACACtgaaattgtaaaaatatttgcaatttatttattattgcaaaTAATCACAGATCACCATTGCTCACATCAACCGATTACTGATTACTGCTGTTCCGAACAATCGATCACGGATCGCtgttgttcccaacaaccagtcACTGCTCACtactgttcccaacgaccaatcagtTATCAACCGATCAAAATACTTTTGATAGACAGTATAGTATTTCTAAAATGTGGAAAGAGTTAGTTTGTGGTGCCGTGACCAAAGTTGACTCTTTTTTGTGGGTTGTTTCCACTGACGTCACTGCGACCTATGcatttacccacaatgcaaaGCATTTATATCTATGTGCTCATTGTAATTCCCTAGCTAAATACCTTATGTATTAGTTCTGTCATGATAGCCTTCTTACCTGaaattcaaaatataaatttctTAAAGAAGAACTTGTTAAAACACATGAGGAAATACTCATACAAATGTCctacattcactcattcaccaAAGACgactctttctttctataagaaataaattacaatccgttattttctattctgataaaatttCTAT
>XM_034301516.1
CTATGGAAGTGTAGtctattaataaacaaaacgGGGTGTATAAGTACTTTTATACACATCAATAACAAGAATAAGATGAATAAGAGTTTTCCTGCATCATTATAGTACGTTCAACGTTGTTAAATAGGCTtgtgtatgaaataaataattattaaaaaataaaaaaagcaatgaaaaaaagGATGGAAAAAGTCAGCAAGGAGAAAGGGACTTCTGGAGTTCTGGAGGAAGAGCCTTCACACACTGCAGGACTGAATATACAAGACAAACGCCCAGTCCAGAGCGTAGATGACTACGAGTGCTCAGGCAATCTGGAAGTGGATTTCCCAGAGCTGTGTGCTGTAGTCGGCTTGAGGGAAATCCCTGACGTGAGACCACTAACAGCAGCATCACCTTCCACAGAAAGAACAACGGAGAGTAGCCAAGAAGAGATTTTCTCTGAAAGCTGTATGGCAACCTGGTCTCCTAAACCCTGCCTTCACATAGAACTGGAGAGCGAGGACTCACGGAGCGTAAAAAGAGTTCGAATATCTGGATGGAGGGTGGACGAGGCGATGGCTCGAGTGCTGAGTAAGACGTTACCATCCCTCAGCAATCTGCAGAGCCTAGAGATGTGGCGGATTGGATTGACTGACCCCATTCTGACCTCCTTAAAGAACACAATTTCTATGTGCTCAAAGCTCAGGACAGTTATTTTGGAGGGAACCCCTATTCCAGAAAACAGTTACCATATTCTCATGGGAGAGGACAGTATGATAACACACCTATCACTGCGAAACAATCGCATAGGAGAAGAGGGAGCACGTCTGATTGGTTTAGCGCTGTCCAAGAATCTCCTGTCACTCAACATGGCCTTCAACGCTGTTGGTGATGCGGGTGCTATTTATCTCGCCCAGGGGTTGCGTCTCAATCGCACTTTGTTGTATCTCTCCCTGGCCAGCAATCACATAGGCGATGTAGGAGCAGCTCATCTGGCTCAGGTGCTTGGCAGATTTGCTCTGACACATGAAGAAATAGTCGAGAGGAGGAGGCTGTTGAAAAGGAAGGACCAACTGGATGCCACCAGAAAGGATGAGAAGCCTCCAACCAATCAGACATTGACAACaacaggaaagaaagaggaCCCCAAAGTGGAAAAGAAGAGAACCTCAGATACTAAGATGCCACAAGGCAAAGGTGGAAAATCAGATGGAAAAGACAAGCATCTTTCAGTGAAGGAACAAGAGaCAGAAGAAGTGGTTGAGACACAAAGCCCTTTGCTGAATCCTGCCATACAGAACATTGGAGGGAAAGTGATTTATCCAGGCAACACAACACTTCTGTCTCTAAACTTGTCAGGCAATAAACTGACACAGCAGTCACTTCAGATGTTCCTGTCATCTGTGGTGTGTCAAGGGAAAAGAGaggaaCAGCTTTCCTCCAGACTGTGAGGTCTTCCTGAAACTACAGGAAATGATGTCACTTAAGGATCCTCTAAACCGAGCCACCTCAGCTCAGGTGGACGCTGAGCAGGGACAGGCAGCATAGTTACCTTTTACGCCTCAGAATTTTACTTTACAATTATCTTTTTTATGCTCTAACATCATGTGTTTTTGTAGTTGCCtcctaagtaaggaataaatcacagtGGGGCGtgctgtgatagaaaaataatcaacgacgtggtggtgtgatggtgtgaagCAAAGGGGAGGGTCATTACcagcccaaagttgattattttctaataaaagcacatcccaacatgttttattcctcttacaccaccatattttgttaataattttgtgTTGAGTCGTATCACGTCACACACATATGAGTAGAGAGAGGAAGTTCACTTGGATTACCACAAGAGTGTAAAGCCAGACTGAGTTGGGCTTCACTGATCGCtactgttcccaacgaccaatcactgatcactactgtccCCCATGACCAATCACGGCTCGCTActtttcccaacaaccaatcactcatcacaaTTGTTCCCAGAAGTAAAAACTTAGCCTGTCTATGCTATATGTGTTCTTCCGAGAAATGTAACACtgaaattgtaaaaatatttgcaatttatttattattgcaaaTAATCACAGATCACCATTGCTCACATCAACCGATTACTGATTACTGCTGTTCCGAACAATCGATCACGGATCGCtgttgttcccaacaaccagtcACTGCTCACtactgttcccaacgaccaatcagtTATCAACCGATCAAAATACTTTTGATAGACAGTATAGTATTTCTAAAATGTGGAAAGAGTTAGTTTGTGGTGCCGTGACCAAAGTTGACTCTTTTTTGTGGGTTGTTTCCACTGACGTCACTGCGACCTATGcatttacccacaatgcaaaGCATTTATATCTATGTGCTCATTGTAATTCCCTAGCTAAATACCTTATGTATTAGTTCTGTCATGATAGCCTTCTTACCTGaaattcaaaatataaatttctTAAAGAAGAACTTGTTAAAACACATGAGGAAATACTCATACAAATGTCctacattcactcattcaccaAAGACgactctttctttctataagaaataaattacaatccgttattttctattctgataaaatttCTAT

Function

symbol description
lrrc71 Orthologous to human LRRC71 (leucine rich repeat containing 71).

NR:

description
leucine-rich repeat-containing protein 71-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928427.2 True 2628 mRNA 0.42 15 12838204 12855492
XM_034301515.1 False 2553 mRNA 0.42 14 12838204 12855492
XM_034301516.1 False 2605 mRNA 0.42 15 12838204 12855492

Neighbor

gene id symbol gene type direction distance location
setdb1a setdb1,LOC108272679,LOC106574954 coding downstream 2732 12816071 ~ 12835472 (-)
clk2a clk2,LOC108437923,LOC107724099,LOC107599513,LOC107656479,LOC107589405 coding downstream 24775 12795731 ~ 12813429 (-)
si:ch211-81a5.8 NA coding downstream 44889 12790796 ~ 12793315 (-)
hcn3 hcn3,LOC108437924,LOC107739502,LOC102783101,LOC103358769,LOC102202422 coding downstream 54338 12771921 ~ 12783866 (-)
ndufv1 ndufv1,LOC108437925,LOC103023083,LOC107693353,LOC107589403,LOC107101109 coding downstream 67523 12761712 ~ 12770681 (-)
ash1l LOC108272684,LOC108437921,LOC106588182 coding upstream 5081 12860573 ~ 12899960 (-)
scamp3 scamp3,LOC106588184 coding upstream 60486 12915978 ~ 12926264 (-)
crabp2b crabp2,crabp2b,LOC107656471 coding upstream 81732 12937224 ~ 12946377 (-)
LOC117596411 LOC101068103,LOC105418166,LOC108412963,LOC106522608,LOC105419408,LOC108431938,LOC106674638,LOC108415995 coding upstream 231995 13087487 ~ 13091746 (-)
trim46b LOC108272350,LOC108437912,LOC107589413,LOC107693334,LOC107750805 coding upstream 553565 13409057 ~ 13443086 (-)
G404719 NA non-coding downstream 151736 12686190 ~ 12686468 (-)
LOC113535190 NA non-coding downstream 160558 12663011 ~ 12677646 (-)
G404692 NA non-coding downstream 202991 12601632 ~ 12635213 (-)
G404687 NA non-coding downstream 246671 12589272 ~ 12591533 (-)
G404682 NA non-coding downstream 259398 12576532 ~ 12578806 (-)
G404818 NA non-coding upstream 58449 12913941 ~ 12923945 (-)
G404896 rprd2 non-coding upstream 128221 12983713 ~ 12984373 (-)
G404900 NA non-coding upstream 136709 12992201 ~ 12993258 (-)
G404904 NA non-coding upstream 143751 12999243 ~ 13002077 (-)
G404916 NA non-coding upstream 163101 13018593 ~ 13021304 (-)
trnav-cac_26 NA other downstream 258553 12579580 ~ 12579651 (-)
trnav-aac_26 NA other downstream 259403 12578729 ~ 12578801 (-)
trnav-cac_25 NA other downstream 260544 12577588 ~ 12577660 (-)
trnav-aac_25 NA other downstream 261400 12576732 ~ 12576804 (-)
trnav-aac_24 NA other downstream 263389 12574740 ~ 12574815 (-)
G404999 NA other upstream 285202 13140694 ~ 13141115 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other upstream 534424 13389916 ~ 13392833 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other upstream 686511 13542003 ~ 13544505 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other upstream 700664 13556156 ~ 13558631 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 904269 13759761 ~ 13761557 (-)

Expression


Co-expression Network