scamp3 (scamp3,LOC106588184)


Basic Information

Item Value
gene id scamp3
gene name scamp3,LOC106588184
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047623.1
NCBI id CM018569.1
chromosome length 15305753
location 12915978 ~ 12926264 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034301716.1
GggatcactgagatcactgagacaAGCTCACTGggatcactgagatcactgggatcactgagatcactgagacaagctcactgagatcactgagaccACTGGGATCACTGGGATCACTGGGACAAGCTCACTCTGCTCTCCAGCTGCACATTAACCAGACATGTCGAAGTACACAAGTTTCCCTGAGCCCACTGAGGATCACAATCCATTCCAGGATCCTTCAGTGACTCAACACAGCGGCAGCTCAGACTATCCCACACTGGACCTGTACAATCCCTTCGACAACAGGGCGAGTGGGcCTCCGCCTCCTTACGAGGTCGCGCCACCAACCGCACCACCAACCCTCCCACCTCAGACTCTGCCTAGCAGGACTACGCCCACAGAACCCAGGAATTATGGATCCTACAGCACACAGCAATCTGCAGTGAACGCCACAACAGCTGACTTGCTGAGGAAGCAGGAGGAGTTGGAGAGGAAAGCAAGGGAGctggagaggagggagagagagctcGACTCCCAAAGCCGCGGCACGGGATCCACCTCTCAGAAGAATTGGCCTCCATTGCCATCTTTCTGTCCGGTGGGTCCGTGCTTCTATCATGACATTAACGTGGAGATCAGCCAGGGCTTTCAGCGCATCGTCACCATCATGTACTACTACTGGATGTGTTCAGCTTGCACTCTGGTCTTCAACTTCATGTCCTGCCTTGCTATGTTTTGTGTGGACACTACTAGTGGTGTAGGCTTTGGCCTAGCCATCCTCTGGCTTCTGCTCTTCACCCCCTGCTCCTTCGTCTGTTGGTACAGGCCTGTGTATAGAGCATTCAGGAGTGATAGTTCCTTCAACTTCTTTgtgttcttcttcatcttcttcgtCCAAGTGGTGGTGTACATCCTTATGACTATTGGCATTCCCGGCTGGGGCTTCAGTGGCTGGATAGTGGGTCTTGCTGCATTAAAGACAAATACTGCAGTTGGGGTGATCATGCTCTTGAATGCATTGGTCTTCACTGCTCAGGCTGCCATGGGTGTGGTTCTGCTCAAGAAGGTCCACTCTCTCTACAGGCAGACCGGCGCCAGCTTCCAGAAGGCCCAGGCAGAGTTTGCCACTGGGGTGCTTTCAAACGACGCCGTGCGCCAAGCAGCCGTGAACGCCACCGCCTCGGCAGCGCAAGGGGCCTTCACCGGAGCACGTTAGACTGAAAGGCAGCATGAATGGGGGGCTGGGGAGAAACTGAGGATGAGTATGAGCTCAAAAAGAGTCTACAGGTATAGAGAGAATTCTGTATATTTCGATACTTGCAGTCCGACACTGTTTCGAAACATACACTAGGCCCTTTTGCTTGTGTGGGAGGAATGGATACAATAGATCAAGGCAAAATTTAAttacttgatgtttttttttttgttagcctTATAATTAACCTTGTTTATCATACCCTTGACCACATGGCTGTCATTACCGATCGGCAGAACCATAAACTAGGTGAGAGTGGCAGTTTTTGGgatttgtttctgttctttattgtcattgtgaaTGATAAATTGATTAGGAAAGCGCTGCCAAGTAGATTAAACTGCACCACACaggtatctctctctctatctgtctcattctctctctctctgtctcattctctctccccCTCATTAGTATATAAATGCTGcgtaaatgttaatgttaaatcgCAAGCTGTCCACACAGATCTGGCCACTCCAAgtttgaaaaaggaaaaaaaaacatgatattttttttttgaaagtcaTAGGACAGTTTCCTATTTTCTACTGTAGGAAATGTAATGGTTTGTTAACCTGCTTGAATAAAGTGTGAAGCACTTCAGAGGCATCAGAAATTGAATAtgtcataattcataatttatgcaaaaaaataaatctttgtaTCCAGCAGTTACAGTTCGAAATAAAACgatctacagtatataatgcTCCCTACAGTTGtggaaacaaatgaaaagaaacataTAAGATAAGTGTGTGCTAAAGGATAATAATACTGATACTAGCCTATATTAAAGTTGCTTTATAATCTTGCTCTGTAATCTAATACTGTGTGCCAAAATTCCCTGGGCTCTATGTAAAAACAGTCAGGAGAAAGATGAATTATTTTCGCCTCTGTTTAAATCCTCTAAATCACTTTATTTGTAAAAGATTAGTGGCTTCAGTTGAACGTAACGCTGTCGGGCTTATGCCTCGCTGCCGCGATTACAAACATAGAGCCTCACGGTTCCCAGTTTTcgtgtttattttgaaatgtcattCTGCATGGTGAATTTCCTTTTCCCAGTGTACATTTGTGTTGTTTGAAATCTCTCAGTCTTAAAACATGTGTGCCCAAGAGACCTCATGATCCAGCGCCTGTTCATTGCTTACTGTCCTGAAAGAATAATAagtgtaaaatgtatatattatagaCAAGTCTGAATTAACACACCTTTAAAATCCTTCATTCATACCTTCATTCTGTCATTTTGTGAATGAAACAGTTCCAGACTGTTAAGACTAAAGCAAAGTGCCAGCAGCCATCATCCAGGATCTTATCGTTCAGTGATTtgtatgaaaatgtataaatgctACTTAACTGTCTAACATTCTGTCCTCCTCTTGTATTTTCCTACGATCGCCAGTCTACGTTTTTTGCACAATGCCAAATGTATTTATCCAgttatgtgttattttgttcTCTCGGTGTTGTGGgctacaggttttttttattttacctgcGCTAACACACTTGATCCAAGCCTTCCTGTTTTGATAAAGGTATGTGAGATCAGGTGGACACTAATATGTGCTGCTTGTCATGTTTGTCtgtggtgtttatttgttttaataaaattaataaatttga
>XM_034301717.1
TCACTGggatcactgagatcACTGGGATCACTGGGATCACTGGGACAAGCTCACTCTGCTCTCCAGCTGCACATTAACCAGACATGTCGAAGTACACAAGTTTCCCTGAGCCCACTGAGGATCACAATCCATTCCAGGATCCTTCAGTGACTCAACACAGCGGCAGCTCAGACTATCCCACACTGGACCTGTACAATCCCTTCGACAACAGGGCGAGTGGGcCTCCGCCTCCTTACGAGGTCGCGCCACCAACCGCACCACCAACCCTCCCACCTCAGACTCTGCCTAGCAGGACTACGCCCACAGAACCCAGGAATTATGGATCCTACAGCACACAGCAATCTGCAGTGAACGCCACAACAGCTGACTTGCTGAGGAAGCAGGAGGAGTTGGAGAGGAAAGCAAGGGAGctggagaggagggagagagagctcGACTCCCAAAGCCGCGGCACGGGATCCACCTCTCAGAAGAATTGGCCTCCATTGCCATCTTTCTGTCCGGTGGGTCCGTGCTTCTATCATGACATTAACGTGGAGATCAGCCAGGGCTTTCAGCGCATCGTCACCATCATGTACTACTACTGGATGTGTTCAGCTTGCACTCTGGTCTTCAACTTCATGTCCTGCCTTGCTATGTTTTGTGTGGACACTACTAGTGGTGTAGGCTTTGGCCTAGCCATCCTCTGGCTTCTGCTCTTCACCCCCTGCTCCTTCGTCTGTTGGTACAGGCCTGTGTATAGAGCATTCAGGAGTGATAGTTCCTTCAACTTCTTTgtgttcttcttcatcttcttcgtCCAAGTGGTGGTGTACATCCTTATGACTATTGGCATTCCCGGCTGGGGCTTCAGTGGCTGGATAGTGGGTCTTGCTGCATTAAAGACAAATACTGCAGTTGGGGTGATCATGCTCTTGAATGCATTGGTCTTCACTGCTCAGGCTGCCATGGGTGTGGTTCTGCTCAAGAAGGTCCACTCTCTCTACAGGCAGACCGGCGCCAGCTTCCAGAAGGCCCAGGCAGAGTTTGCCACTGGGGTGCTTTCAAACGACGCCGTGCGCCAAGCAGCCGTGAACGCCACCGCCTCGGCAGCGCAAGGGGCCTTCACCGGAGCACGTTAGACTGAAAGGCAGCATGAATGGGGGGCTGGGGAGAAACTGAGGATGAGTATGAGCTCAAAAAGAGTCTACAGGTATAGAGAGAATTCTGTATATTTCGATACTTGCAGTCCGACACTGTTTCGAAACATACACTAGGCCCTTTTGCTTGTGTGGGAGGAATGGATACAATAGATCAAGGCAAAATTTAAttacttgatgtttttttttttgttagcctTATAATTAACCTTGTTTATCATACCCTTGACCACATGGCTGTCATTACCGATCGGCAGAACCATAAACTAGGTGAGAGTGGCAGTTTTTGGgatttgtttctgttctttattgtcattgtgaaTGATAAATTGATTAGGAAAGCGCTGCCAAGTAGATTAAACTGCACCACACaggtatctctctctctatctgtctcattctctctctctctgtctcattctctctccccCTCATTAGTATATAAATGCTGcgtaaatgttaatgttaaatcgCAAGCTGTCCACACAGATCTGGCCACTCCAAgtttgaaaaaggaaaaaaaaacatgatattttttttttgaaagtcaTAGGACAGTTTCCTATTTTCTACTGTAGGAAATGTAATGGTTTGTTAACCTGCTTGAATAAAGTGTGAAGCACTTCAGAGGCATCAGAAATTGAATAtgtcataattcataatttatgcaaaaaaataaatctttgtaTCCAGCAGTTACAGTTCGAAATAAAACgatctacagtatataatgcTCCCTACAGTTGtggaaacaaatgaaaagaaacataTAAGATAAGTGTGTGCTAAAGGATAATAATACTGATACTAGCCTATATTAAAGTTGCTTTATAATCTTGCTCTGTAATCTAATACTGTGTGCCAAAATTCCCTGGGCTCTATGTAAAAACAGTCAGGAGAAAGATGAATTATTTTCGCCTCTGTTTAAATCCTCTAAATCACTTTATTTGTAAAAGATTAGTGGCTTCAGTTGAACGTAACGCTGTCGGGCTTATGCCTCGCTGCCGCGATTACAAACATAGAGCCTCACGGTTCCCAGTTTTcgtgtttattttgaaatgtcattCTGCATGGTGAATTTCCTTTTCCCAGTGTACATTTGTGTTGTTTGAAATCTCTCAGTCTTAAAACATGTGTGCCCAAGAGACCTCATGATCCAGCGCCTGTTCATTGCTTACTGTCCTGAAAGAATAATAagtgtaaaatgtatatattatagaCAAGTCTGAATTAACACACCTTTAAAATCCTTCATTCATACCTTCATTCTGTCATTTTGTGAATGAAACAGTTCCAGACTGTTAAGACTAAAGCAAAGTGCCAGCAGCCATCATCCAGGATCTTATCGTTCAGTGATTtgtatgaaaatgtataaatgctACTTAACTGTCTAACATTCTGTCCTCCTCTTGTATTTTCCTACGATCGCCAGTCTACGTTTTTTGCACAATGCCAAATGTATTTATCCAgttatgtgttattttgttcTCTCGGTGTTGTGGgctacaggttttttttattttacctgcGCTAACACACTTGATCCAAGCCTTCCTGTTTTGATAAAGGTATGTGAGATCAGGTGGACACTAATATGTGCTGCTTGTCATGTTTGTCtgtggtgtttatttgttttaataaaattaataaatttga

Function

symbol description
scamp3 Predicted to be involved in protein transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in recycling endosome membrane and trans-Golgi network membrane. Orthologous to human SCAMP3 (secretory carrier membrane protein 3).

NR:

description
secretory carrier-associated membrane protein 3-like

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19995 SCAMP; secretory carrier-associated membrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034301716.1 True 2872 mRNA 0.44 9 12915978 12926264
XM_034301717.1 False 2795 mRNA 0.44 10 12915978 12926237

Neighbor

gene id symbol gene type direction distance location
ash1l LOC108272684,LOC108437921,LOC106588182 coding downstream 16018 12860573 ~ 12899960 (-)
lrrc71 lrrc71 coding downstream 60486 12838204 ~ 12855492 (-)
setdb1a setdb1,LOC108272679,LOC106574954 coding downstream 80506 12816071 ~ 12835472 (-)
clk2a clk2,LOC108437923,LOC107724099,LOC107599513,LOC107656479,LOC107589405 coding downstream 102549 12795731 ~ 12813429 (-)
si:ch211-81a5.8 NA coding downstream 122663 12790796 ~ 12793315 (-)
crabp2b crabp2,crabp2b,LOC107656471 coding upstream 10960 12937224 ~ 12946377 (-)
LOC117596411 LOC101068103,LOC105418166,LOC108412963,LOC106522608,LOC105419408,LOC108431938,LOC106674638,LOC108415995 coding upstream 161223 13087487 ~ 13091746 (-)
trim46b LOC108272350,LOC108437912,LOC107589413,LOC107693334,LOC107750805 coding upstream 482793 13409057 ~ 13443086 (-)
chrna11 si:ch211-39a7.1,LOC108273254,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611 coding upstream 563685 13489949 ~ 13526100 (-)
LOC113535306 NA coding upstream 622153 13548417 ~ 13549215 (-)
G404719 NA non-coding downstream 229510 12686190 ~ 12686468 (-)
LOC113535190 NA non-coding downstream 238332 12663011 ~ 12677646 (-)
G404692 NA non-coding downstream 280765 12601632 ~ 12635213 (-)
G404687 NA non-coding downstream 324445 12589272 ~ 12591533 (-)
G404682 NA non-coding downstream 337172 12576532 ~ 12578806 (-)
G404896 rprd2 non-coding upstream 57449 12983713 ~ 12984373 (-)
G404900 NA non-coding upstream 65937 12992201 ~ 12993258 (-)
G404904 NA non-coding upstream 72979 12999243 ~ 13002077 (-)
G404916 NA non-coding upstream 92329 13018593 ~ 13021304 (-)
G404899 NA non-coding upstream 96480 13022744 ~ 13025118 (-)
trnav-cac_26 NA other downstream 336327 12579580 ~ 12579651 (-)
trnav-aac_26 NA other downstream 337177 12578729 ~ 12578801 (-)
trnav-cac_25 NA other downstream 338318 12577588 ~ 12577660 (-)
trnav-aac_25 NA other downstream 339174 12576732 ~ 12576804 (-)
trnav-aac_24 NA other downstream 341163 12574740 ~ 12574815 (-)
G404999 NA other upstream 214430 13140694 ~ 13141115 (-)
dpm3 dpm3,LOC107693280,LOC107678800 other upstream 463652 13389916 ~ 13392833 (-)
rps27.1 rps27.2,LOC107589412,LOC106605923,LOC108429942,LOC107582081,LOC107699547 other upstream 615739 13542003 ~ 13544505 (-)
cks1b cks1b,LOC108433716,LOC107753514,LOC106570108 other upstream 629892 13556156 ~ 13558631 (-)
s100a11 s10ab,LOC105901467,LOC102790362,LOC105028986,LOC106570111 other upstream 833497 13759761 ~ 13761557 (-)

Expression


Co-expression Network