XLOC_000059


Basic Information

Item Value
gene id XLOC_000059
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5311479 ~ 5313595 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003018
TTTTAATACTTATGACAAGAGTTTGTTCAAATGAGGTTGAGCAAGCACCATTACTAATAACATGCAGTCAAAGGTGCTAAATTTGACCCCAGGTACCTTGTGTCCTTTGTCCCTCCAGGCTCACCTTGTCAGCCTTCCAGACTTGGAGGCAAAGCCGTGTCAGAACAGCACTCATGTCTCCAACTAGAGGAAATTGATCTCTCAAGTCTGTCACACAACTATGAAGGGGCCAGGGGCTCAAGTGTCAGGTTACCGGAGGCAGGTGCAAACCCACCAATGGGGCTATGAATTGCAAGTGAGACTGTTCCCGATGGGTTGTCCCTGCAAAAAGAAACTTGTAAATAGTATGAAAGCGGGCCAACATGCCTTGGATTTCTCCAGTTCGGGTATACCtgaagaaggggaaaaaaaggaCCCTCTCCTGCCAAAGGTATCGTCTGCAAAATTAGCACAGGTGCAAGGTTTCGCACAACAAAGGACTCTTTGTGACTACCCGTGATCACGTTTTGTGACTAGGTTTCAATTTGGGAAAGAAAATGTAATATCTTAGAGAACAAACGTGGTTGGTTTGAAAAGCAGGGATACATTATCTAGATACAACTAACACCAGTTGTAAAGAAATAAGTCCCGGCTTACAATGTCATCTGCACATCGGGAACAGGAgcatggacatttctggagagaggCCAATACAAACAGAATTCCTTTCGCTTGGCATTCCAGCTTGATTAATATGGAAGGTAGGGTCAGACGGCTTGTAGGTAATTCGGCCAACAAGTGGTAAGTGTTGAGTGTTTCTCTTCATTGACACACATGGAGCGGAGTTCCACGATGTGGCCGCTGCTAATGCCTGCCTGCAGCCAAAATAGGAAGTCCCTGTGGCGAGACAGACCCATGCGCTCAGGCTGGAAAACCTCTCAACAACATCCTGTGGTCACCTGGACACTATGACCCAGAAGAAAGGACTCCTTAGAAAGCGGCCCCAGCAGCAGAGGCCTGCCTGAGGGCCCCTGAGGAGGAGAAGACATGCCATTCGGTGCATGCAAAGGGAGGAAGGCTTTGTAAATAACGTCCCTGGAATCCCAAGACTGCTTGCTTTTTAGTGCGCTCCCCCCTTTCCCAAAAAGGCTGAAGGGGAAGAATCGGATCAGAGGCAGCCTTGGGTTGTCACCTGCCTGGGATATGAGGGGGGTGGATGAAGACTGAACAGAAAATTAAAGAGAAGGAAGAGAGTGTGAGACAAAGAGAATCAGAGATGgcgagatagagagagaaaaccTTCCAGGTACTCTTAATTACTCTCGGAGGATAAATATTTCTTTAGTTATAGGGGTagagagacaaaaaaaatgaTGAGCTGTTCCAGGAGTGATTATCTTTCCGTTTTAGgtgtttttgaaaatattaaaagttCTTGTTTTACTGCTGGACAACTCCAAGAGATGTAACAAAACACACTACTACAGTATATGTTAAGTGGAGATTTGACTGACAAGCTGGCCAAATGAAGGTATAAGACCTTTGGAGGTTTTGCTCACCCAAAAACTTACCTGTTTGCCGTTGTGTCGTTACATATATTAccaataacacaggctcattttgaaaacgtaatcctatatacatttctggagatttctAATTAcatagccagaagtacgtatggctgcattttgtctttaaaacgaatgataCTGTGTGGTATGACGctattccttttcgcgcttaccatcTGGCCACTTACCTCCGTATTGactgctttcccgctgttaccagtttgtctagtagctcaccatgtacgttgacggacttgagacgcagagacaagttgaccatgacgatggaattcgagtctggtgaagaatgg
>TCONS_00003017
TTTTAATACTTATGACAAGAGTTTGTTCAAATGAGGTTGAGCAAGCACCATTACTAATAACATGCAGTCAAAGGTGCTAAATTTGACCCCAGGTACCTTGTGTCCTTTGTCCCTCCAGGCTCACCTTGTCAGCCTTCCAGACTTGGAGGCAAAGCCGTGTCAGAACAGCACTCATGTCTCCAACTAGAGGAAATTGATCTCTCAAGTCTGTCACACAACTATGAAGGGGCCAGGGGCTCAAGTGTCAGGTTACCGGAGGCAGGTGCAAACCCACCAATGGGGCTATGAATTGCAAGTGAGACTGTTCCCGATGGGTTGTCCCTGCAAAAAGAAACTTGTAAATAGTATGAAAGCGGGCCAACATGCCTTGGATTTCTCCAGTTCGGGTATACCtgaagaaggggaaaaaaaggaCCCTCTCCTGCCAAAGGTATCGTCTGCAAAATTAGCACAGGTGCAAGGTTTCGCACAACAAAGGACTCTTTGTGACTACCCGTGATCACGTTTTGTGACTAGGTTTCAATTTGGGAAAGAAAATGTAATATCTTAGAGAACAAACGTGGTTGGTTTGAAAAGCAGGGATACATTATCTAGATACAACTAACACCAGTTGTAAAGAAATAAGTCCCGGCTTACAATGTCATCTGCACATCGGGAACAGGAgcatggacatttctggagagaggCCAATACAAACAGAATTCCTTTCGCTTGGCATTCCAGCTTGATTAATATGGAAGGCTTGTAGGTAATTCGGCCAACAAGTGGTAAGTGTTGAGTGTTTCTCTTCATTGACACACATGGAGCGGAGTTCCACGATGTGGCCGCTGCTAATGCCTGCCTGCAGCCAAAATAGGAAGTCCCTGTGGCGAGACAGACCCATGCGCTCAGGCTGGAAAACCTCTCAACAACATCCTGTGGTCACCTGGACACTATGACCCAGAAGAAAGGACTCCTTAGAAAGCGGCCCCAGCAGCAGAGGCCTGCCTGAGGGCCCCTGAGGAGGAGAAGACATGCCATTCGGTGCATGCAAAGGGAGGAAGGCTTTGTAAATAACGTCCCTGGAATCCCAAGACTGCTTGCTTTTTAGTGCGCTCCCCCCTTTCCCAAAAAGGCTGAAGGGGAAGAATCGGATCAGAGGCAGCCTTGGGTTGTCACCTGCCTGGGATATGAGGGGGGTGGATGAAGACTGAACAGAAAATTAAAGAGAAGGAAGAGAGTGTGAGACAAAGAGAATCAGAGATGgcgagatagagagagaaaaccTTCCAGGTACTCTTAATTACTCTCGGAGGATAAATATTTCTTTAGTTATAGGGGTagagagacaaaaaaaatgaTGAGCTGTTCCAGGAGTGATTATCTTTCCGTTTTAGgtgtttttgaaaatattaaaagttCTTGTTTTACTGCTGGACAACTCCAAGAGATGTAACAAAACACACTACTACAGTATATGTTAAGTGGAGATTTGACTGACAAGCTGGCCAAATGAAGGTATAAGACCTTTGGAGGTTTTGCTCACCCAAAAACTTACCTGTTTGCCGTTGTGTCGTTACATATATTAccaataacacaggctcattttgaaaacgtaatcctatatacatttctggagatttctAATTAcatagccagaagtacgtatggctgcattttgtctttaaaacgaatgataCTGTGTGGTATGACGctattccttttcgcgcttaccatcTGGCCACTTACCTCCGTATTGactgctttcccgctgttaccagtttgtctagtagctcaccatgtacgttgacggacttgagacgcagagacaagttgaccatgacgatggaattcgagtctggtgaagaatgg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003018 False 1864 lncRNA 0.45 3 5311479 5313595
TCONS_00003017 True 1851 lncRNA 0.45 3 5311479 5313595

Neighbor

gene id symbol gene type direction distance location
XLOC_000058 spry2 coding upstream 33896 5273481 ~ 5277583 (+)
XLOC_000057 NA coding upstream 281324 4901460 ~ 5030155 (+)
XLOC_000056 FO744838.1 coding upstream 631002 4598060 ~ 4680477 (+)
XLOC_000055 slitrk6 coding upstream 1157147 4101741 ~ 4154332 (+)
XLOC_000054 CABZ01063288.1 coding upstream 1551445 3759924 ~ 3760034 (+)
XLOC_000060 tuba8l2 coding downstream 88881 5402476 ~ 5419116 (+)
XLOC_000061 stk16 coding downstream 108844 5422439 ~ 5434261 (+)
XLOC_000062 atic coding downstream 123795 5437390 ~ 5504130 (+)
XLOC_000063 cpo coding downstream 262556 5576151 ~ 5587575 (+)
XLOC_000064 NA coding downstream 393375 5706970 ~ 5728684 (+)
XLOC_000053 NA non-coding upstream 1590876 3718666 ~ 3720603 (+)
XLOC_000051 CR352215.2 non-coding upstream 2908255 2403103 ~ 2403224 (+)
XLOC_000065 NA non-coding downstream 481418 5795013 ~ 5799092 (+)
XLOC_000072 NA non-coding downstream 1066283 6379878 ~ 6554470 (+)
XLOC_000073 NA non-coding downstream 1084615 6398210 ~ 6403223 (+)
XLOC_000076 NA non-coding downstream 1351438 6665033 ~ 6668339 (+)

Expression


Co-expression Network