AMCG00000266


Basic Information

Item Value
gene id AMCG00000266
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9035625 ~ 9079959 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000266
ATGGCGCAGAGCACGAACAGGCTGTCGTTGATGAGCACCCGCGCCAGCACCGTGCGCTTCAGCTCGCTCTCCGCCACGCCACCCTGCACCAGCATGGCGCATGTCACATTCACTACCAGGAAGAACAGGCTGGCGAACAGGAAGGCAAGTCGCAGTGGCACCCTGGGAGGGAACTTCGCCCTGACGCCGCTGCTGGGCTGGCTGCTGTCTCAGCAGATCTCAACAAAGAGACAGAAATCACCTTTCTCCTCCCCCCAGTCCAGTACAGATCAGCCAGAGCTGCAGGTAAACAAACGCGAAGAGGAGCGAGTACAGGACGGTGTAGACCACCGTCAGCCCCAGCTCCACGGACGGGGGGACGGCAGCCCGGATCGGCTCGTCCGTGGTGTCCGTGACGGACGTCAAAACACTCAGACTGGCCTGGCTATCTGTCAACAACATTATGGTGAAGCATGGTATGGCAACATAGGTGAAGAGATTCTTAAGAGCTTTGCCACCGACACGGTTTTTGATGTCGATGCCATTGTGGCTCATGTGCTCTTCACTATCCTCTTCAATGAGGTGAAGTATGTGCACACACCCGCAGAGCTGCACACCTTGGAGAAGGCCGTGAAGGGGAGGGCTGACATTGTGTTTGCTTACATACAGGCCCTGGGAACTCCTGAGCATCGGTCAGTGATGGAGGCTGTGTTTGTCTATGGGGCCAAATACCAGTTTGTGTTGACGACTGGAGGCCCTGTACTTAAGGACATGGGAGTGGAGGAGCCGTCCTCTCTGGTGGCCGGCCTGTGGTTCCTGCACTGTAAGGGAGTGTCCAGCCGGTCAGAGCCCTGTGACTACACTGCCCTGAGGAAACCTGTGACCACCCTCAACATCTATGCCTTCCTGCAGCTCATGGAGGCCCCTCTTGTGACCGAGGCCACGGTGGAGCCGTCGCAGGTAAGGACTGTCCATGGGCATCTCCACACCCCACTGCTGTTCCTCTTCACCCAGAGAGAGACCCTCACCCTGGACCGCAGCACGGCCCACAGCCTGGCCCAGAGACTGAGGGGACAGGGATAGCCCTCAAGCAATCATCCCGGTGGAGTATAATGCAGCATACAGACTACCAGGGGAGGGTTCTCCTGTCAAGTTCCTGACCTTGCAAAACATGGATGATGTTGTCAACCTTTTCGTGGAGAAAACACCCtcagatgaggaggaggaagcagAGGATGAAGAGGATCAAGAACCGCACTGGTCTCTCTTGGACATCCTGGATGATGAGGTGGCCGAGTCCGTGTACAGGGAACGGGGTGTGGAGCTCAACTATGAACTGGTCCCAGAATTGACAACCGAGACTATCAAGCCTGCAGTGATGGAAACTGAGCACACGGTGGTGCTCTTCTACTTCAGATGGGACGCTGCATCCATGGCTTTCATGCAGTCTTATCTCGAGATAGCTGACATGCTCAAAGATTTGCCTGACGTGAAGCTGGCCCGAGTGGACTGTGGTGAGTGGACAGATCTGTGCACCAGTCAGAACATCTCCCGCTTTCCAACCATCAAGATGTTCCGGCCCGGTGAGGAGCCGCAACTGTACAGAGGCATGCTGGGAACTGAGAGTCTTCACAGGTTCATCATGCTGAGCCGAGTCCCAGTCCCTCTTTTGCTGTCTTCCTGGGAAGAGGTTCAGTCCTACTTAGGAGGAGAGCTGTACCGGAGACATGCACGCTACTCTGCAGTCACTGTCCTGGGCCTGTTCAGCTCCAGCATGGACCAAGGAAGTGCAGTGTTTCGGCAAGCTGCCAAGAGACTAAGGGGGCAGGTTGTGACAGGTCTTGTTGCTGAGGAACTGGCAACAAAATGGGCTCAGAACTTTGCGGTGAAGCTGCCGGCAATGTTGGTCTCCCGGGGGGCAGGTTTCCCCGTAGAGGCGTTTACCCTGCAGATCTCAGCAGAGGAAGAAATGACATCAAAAATCCAGAGGGCCATGCTTGACAAATTTCCCGAGCTGACCGTGGAGAATTTGCCCTCTTACTTGGAGCTGGGCAAGCcactgttgctgctgtttgtgcAGGACGAAAATGGAGAAAGTGGAGAAGCAATACAGGAGCTCCGTGGGCTCTTGGGTAGAGGGCTGCCGGATTCATACCTGCTCTGTTGGATACACCTGAGCCGAACGCCAGCCGGGAGGGGGGTGCTGGAGTCGTACCTGGGCTCCGTGCCTGTACTGCCAGCGCTCGTGCTGGTAGAGCTGGGCTCAGGAGAAGAGGTCTTCCAGTTCCCCCCAGGACGCCCCCTGCTGACTGAGTCTGTTCTGCAGTGGCTGGTCCGACTGAAGAACAAAGAGGAGCAGCCTGCAGGTGTGATATCAGATGGGAAGTGGGGTCCCCCTGTCCCCTTCTATGACTTCCTGGCGATTATGGACAAGGAGGCGCCAGGGTTTGCAGCCCAGCGGAGCCCCCAATCGAAGAAGGATGTGggtgaagaagaggaagacGAAGAGGAGCGAGACCAAGCGTGGGATTGCAAGTCTGACAAGCCTGCATTTGAGAATCCTAGTCCATCGCCGGCCCAGTCAGGCGAACCGCCCTCCCCACAACACTGGGAACTCTGAGCGACACTGGGAGACCCAAATACCAGAGCCTCTGTCCTCTTCTGCTGTGCCTTTGCAGCATTTGTCTGTCAGGTCAGGTATCACTGCTCACCTCTGAGGGGCATTCTCCACTCTTGACCTATTGGAACACACCTAAAAACAACATGGAAGAAACGAGGGGATATTTCACAATATGACTGAAATGTCATTGGAGagctcctttttttttccaaccccAAGATAACAGACCGTTCCATAAAGGAAGTCATGCATAGAAGTAGACTGGGAAGTTAGTCAAGCCCTAATCAAACAATATAAACGATTGTAGATTTATATGTAAAACTGtacaattatgaaaacattgGCACACCCTTGTTGGAATGGAAGTGGAGTTACAAAAGCGATTGCACTCTGATACCAGTGGGATCATCATATTTGCATAAGAAAAGTGCTCAGCTATGCAAACTTGCTAATACTTTCTTAACaaactgtttttgctttttgtttgttaaatcatGGGCAGAAGATTCAAATACACTCACTCAGTGTAGCAGGAGGGCTGGCCCTGGAACGGCTTCCCTTAAATCAACTTTCCACATCCAAGGTGGTCTGCAATACATCTAAACATGTTTGACGTTGCAATAGACAACAATGTATACTGCATTAACATgaactgtgtttctgtttgggAAATGCTGATATAAAATTCAATATGGTGTAGCTACAGGGTCTTGAGTTATCATGGGATTATAGGACCAGAAGTCAGGGCTGGAGCTACAGACATGAGAGCAGCATAACAGacaaatatctgaaatgtaGGAATATCTGTCactcaaattatacaaataaaactatgaaCAATGTCAATGTCATCACCCTAAAACTACCAATAGAACTGGAATAAAATGCATCCCATCCACGTCATAAAACTATAATCCTAAG

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair
ko03440 Homologous recombination
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000266 True 3520 mRNA 0.52 21 9035625 9079959

Neighbor

gene id symbol gene type direction distance location
AMCG00000259 NA coding upstream 10898 9018662 ~ 9024727 (+)
AMCG00000258 gnpnat1 coding upstream 31111 8997132 ~ 9004514 (+)
AMCG00000255 samd4a coding upstream 90036 8924397 ~ 8945589 (+)
AMCG00000256 NA coding upstream 129229 8902907 ~ 8906396 (+)
AMCG00000252 gjd2,gjd2b coding upstream 448270 8585904 ~ 8587355 (+)
AMCG00000271 NA coding downstream 41106 9121065 ~ 9156942 (+)
AMCG00000273 trim9,LOC102776798 coding downstream 251577 9331536 ~ 9355148 (+)
AMCG00000274 pygl,LOC104938237 coding downstream 276022 9355981 ~ 9363434 (+)
AMCG00000278 NA coding downstream 298604 9378563 ~ 9412332 (+)
AMCG00000277 LOC106517965,LOC107602930 coding downstream 334718 9414677 ~ 9427542 (+)
G149172 psmc6 non-coding upstream 19474 9013371 ~ 9016151 (+)
G149059 NA non-coding upstream 361839 8668980 ~ 8673786 (+)
G149056 NA non-coding upstream 450658 8584488 ~ 8584967 (+)
G149055 NA non-coding upstream 451618 8583648 ~ 8584007 (+)
G149001 NA non-coding upstream 1079236 7955972 ~ 7956389 (+)
G149253 NA non-coding downstream 200104 9280063 ~ 9285151 (+)
G149359 LOC103376870 non-coding downstream 639988 9719947 ~ 9776988 (+)
G149416 slc39a9,LOC107721951,LOC107664419 non-coding downstream 877754 9957713 ~ 9962571 (+)
G149415 NA non-coding downstream 893089 9973048 ~ 9975172 (+)
G149450 NA non-coding downstream 941463 10021422 ~ 10021853 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other upstream 450352 8579717 ~ 8585273 (+)
AMCG00000251 NA other upstream 460501 8572936 ~ 8575124 (+)
AMCG00000217 gpx2 other upstream 1672918 7359278 ~ 7362707 (+)
AMCG00000215 max,LOC107668248,LOC103457350 other upstream 1711174 7313872 ~ 7324451 (+)
AMCG00000216 srsf5b,srsf5,LOC107093669,LOC100707620,LOC102304179,LOC102202212,LOC103457348,LOC105936365,LOC105024333,LOC107756601,LOC107602033,LOC103029514,LOC103359433,LOC108233477 other upstream 1738660 7290666 ~ 7296965 (+)
AMCG00000285 map4k5 other downstream 360102 9440061 ~ 9486689 (+)
AMCG00000286 sos2 other downstream 434863 9514822 ~ 9546411 (+)
AMCG00000281 cpsf2,LOC106608196 other downstream 481598 9561557 ~ 9591088 (+)
G149424 NA other downstream 889365 9969324 ~ 9970801 (+)
G149525 LOC100846954,LOC107575789 other downstream 1454631 10534590 ~ 10535137 (+)

Expression


Co-expression Network