AMCG00000324 (jmjd7)


Basic Information

Item Value
gene id AMCG00000324
gene name jmjd7
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11732396 ~ 11734499 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000324
CTGTACCTGAACGAGGCAGTGCCATATTTAAGTTCACCTCCGTCTCCTCTGGCTTTCTATCGGGACTGGATCGGCCCAAATAAGCCCTGTATCATTCGCAATGCCTTCAACCATTGGCCAGCCCTGTCCAGGTGGAACCCATCTTACCTCCGGGAGGCGGTGGGCTCCAAGGAGATCAGTGTGGCGGTCACTCCGCATGGCTACGCGGACGCGGTGTACGGCCATCGCTTCGTCATGCCCGAGGAGCGCCGCATGCCCTTCGCCTCGGTGCTGGACATCGTGGAGCACAAGGGGGAGAGGACGGGCGTGTTCTACGTTCAGAAGCAGTGCTCGAACCTGACCGAGGAGCTGCCCGAGCTCACCGGGGACCTGGAGACGGACATCCCCTGGATGAGCGAGGCCCTGGGGAAGCAGCCTGATGCTGTGAATTTTTGGCTGGGAGAATCCACTGCGGTGACATCGTtgcacAAGGACCACTATGAGAATCTGTACTGCGTGATCTCAGGAGAGAAGCAATTCATTCTCATCCCCCCCTCAGACCGGCCCTTCATTCCGTACGAGCTTTACCAGCCAGCCACGTTCTGCCAGAGAGAGGATGGCACTTTCGATGTGGTGGATGAGCCGAATACTGAAAAGGTGCCGTGGATCCCTGTGGACCCTCTGAACCCCGACCTGCAGCGCTACCCCAACTACAGCCTGGCCCGCCCCCTGAGCTGCACGGTGAAGGCTGGCGAGATGCTGTACCTCCCCGCGCTGTGGTTCCATCACGTCCGGCAGTCTCACGGCTGCATCGCAGTGAACTTCTGGTATGACATGGAGTTTGATATCAAGTATAACTACTTCCAGCTGGTGGAGTCTCTGTCCAAGGTGGTGGGCCCGCTGTGA

Function

symbol description
jmjd7 Predicted to enable 2-oxoglutarate-dependent dioxygenase activity. Is expressed in alar plate midbrain region; immature eye; mesoderm; and optic tectum. Orthologous to human JMJD7 (jumonji domain containing 7).

NR:

description
PREDICTED: jmjC domain-containing protein 7

GO: NA

KEGG:

id description
K19219 JMJD7; peptidyl-lysine (3S)-dioxygenase / protease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000324 True 885 mRNA 0.59 7 11732396 11734499

Neighbor

gene id symbol gene type direction distance location
AMCG00000323 NA coding upstream 17778 11704595 ~ 11714618 (+)
AMCG00000326 NA coding upstream 43917 11685554 ~ 11688479 (+)
AMCG00000325 NA coding upstream 52698 11677153 ~ 11679698 (+)
AMCG00000327 NA coding upstream 57709 11672207 ~ 11674687 (+)
AMCG00000350 tmem121a,tmem121,LOC107594772,LOC107377718,LOC107674105 coding upstream 161167 11570345 ~ 11571229 (+)
AMCG00000332 NA coding downstream 102294 11836793 ~ 11839680 (+)
AMCG00000353 NA coding downstream 131656 11866155 ~ 11886897 (+)
AMCG00000351 ivd,LOC107719458 coding downstream 299632 12034131 ~ 12041923 (+)
AMCG00000339 NA coding downstream 341557 12076056 ~ 12090893 (+)
AMCG00000340 rpusd2 coding downstream 427492 12161991 ~ 12169461 (+)
G149602 NA non-coding upstream 294577 11437369 ~ 11437819 (+)
G149595 NA non-coding upstream 364171 11338391 ~ 11368225 (+)
G149591 NA non-coding upstream 405845 11326186 ~ 11326551 (+)
G149587 NA non-coding upstream 509289 11222829 ~ 11223107 (+)
G149572 NA non-coding upstream 556330 11175662 ~ 11176066 (+)
G149666 NA non-coding downstream 52594 11787093 ~ 11791091 (+)
G149667 NA non-coding downstream 57372 11791871 ~ 11792096 (+)
G149668 NA non-coding downstream 58868 11793367 ~ 11794856 (+)
G149672 NA non-coding downstream 62876 11797375 ~ 11798007 (+)
G149673 NA non-coding downstream 65062 11799561 ~ 11799878 (+)
G149525 LOC100846954,LOC107575789 other upstream 1197259 10534590 ~ 10535137 (+)
G149424 NA other upstream 1761595 9969324 ~ 9970801 (+)
AMCG00000281 cpsf2,LOC106608196 other upstream 2141308 9561557 ~ 9591088 (+)
AMCG00000286 sos2 other upstream 2185985 9514822 ~ 9546411 (+)
AMCG00000285 map4k5 other upstream 2245707 9440061 ~ 9486689 (+)
AMCG00000352 NA other downstream 231056 11965555 ~ 11995026 (+)
G149859 NA other downstream 945171 12679670 ~ 12727903 (+)
AMCG00000381 NA other downstream 1232378 12966877 ~ 13030853 (+)
G150069 NA other downstream 1956340 13690839 ~ 13692589 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 2398639 14133138 ~ 14153840 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location