AMCG00000339


Basic Information

Item Value
gene id AMCG00000339
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12076056 ~ 12090893 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000339
ATGCGCAAACGTAGACCACTGCGTCTGAAGCACAACCTCTTAGACTCGgagAGCAAGGAGCATGTTTTGGCCACTGTAAGACGTCTTCTCttgtctctctccccaggctCTGTGGGGAAGTATGTGATGACCCACGCGAGGCAGAAGGATTCTCTGAGTCGGTATCAGAGTGAAGGCCGGGACCAGTTGGAGAGCGGGCCGCATGGTGAGACAATGGGTGGAGCCTGGCCTGAGTGCCCAGTGCGAGAAGGAAGGACCAAGCAGGGCATGGCCAAGAGAGGTGGGACAAAGGAAAGCAAGGAACTGAGtggagagcaggacaggaagtCCTACCCCCTGAGGAAGAGGGTGGGCGCGCCCGGAGTTGGCACTCGCAATTGTCATGTTGTGCTGACCCGCTTAGAACAGGGTGGTGTACAGGATGACCTGAGCAGGGAGATCCAATTGGAGAATCTGGCCAATGACATACAAGAACAGAGCTGCAAGGCAGGACATGAGAGGAGTATGTTTTACGGCTGCACCAAGAAAGCAAGCAAAGTCCGTAGGCAGACACTGGAACCAAAAACCGAACTACAACCTGACGCGTGCCCACCTGCCCATGAGCCACGCAAGCGCAGGGTGGCATCTCTAAATGCAGAAGCGGTTAACAGCTTGCTTTTAGAACGGGAGGATTTCCAACAGGCATCCAAAACAGCCAAAAAGCCACCTCAGCGGTTCAATGGAGAATGTGCCCCTTCTAAGGAACTCGCCAAGGATGTGGTGAATGTGGGAAGGCATCCTGACGCCCCAAAGGCTTCCAGCACTCCCAAATCAGACTTGTGTGGAAGTCCCAAAAGCCGTAAGAAGGCAAAGACAGAGACCGAAGGCCAACAGGCGGGAGGTCTGGACAGCCCTGCCCCTCGACGCCTAGCAGGACTTAATGCCGCAGCTCTGCTGAAGCTCACGAGTGCCTCAGCCGGGGCCAAACGCAGATTAAAGACCGACTGCAAGGGAGGATGCGGAGGGACCGGAGTAAAGCAACATTCGAAATCCCGGAAACAGCGGCATAAACAACACATGCAGCTCCAGCTGATGCAACAGGGGAGCTGTGCAATGTGCAAGAAGGAAGCTTTTACTCCCAAAATGCAGTGGGAGGAATCTACAGACAGGGATGGTTTCTCCACATCAGGTTACCAGTGCCGGAGTATGCTGGGCTACCCCCTGAAAGCTGTCAAAGAGGAGCAAACCGAGACCGAGGTAGATCCATTTTACTGTTGCTCCCAAGGTGAATCGATGGAGTACTGCCACAGACTGGCTCTTTTTCTAGGACGCCAGAGCTATGGAGAACCAGAGGATCATTCCCCTGCCTCCCTCAAACAGGAGTTCCtcatacacccacacaccctGGCACACCCTGCCCTGACTGTAGGCACACACCCCTACCTGTGCACAGACCCCTGCTTCTCTGGCTATTACCTCCAATTTGGCCACCACGGAGCTTCCTCGCCCCCTCTGACGAATGGCCCTGTGCCCTTTCCCCCCTCCGCTGTGCCCCCCGTCACGCTGTGCCCAGGGGGGGTGCCGAGCTCAAAGCTGGTGGCTTCTGCGGTCTCCCACCCTTCAGGAATCCCGCACCCTGTGTTCTGCGGCTCGGTGGGGTCGCCCTGCTTCGGGGAGGCATGCAGGGTTAATGGCTTTGTGACGGCTGCGGCTGCTTACAGAGCTATGCAGCCCGTGACCAGCAGGAGGTGCACTTTCAATTCAAGCTGTACTGGATGCaccaacaaaatcaaaacagAGAGCTACACCTCCTCCCTGGACGAGCACAGCCCAGCTATTCCAGTGTCACCTACCCTGCCTCTCTCAGGATGCCCAGTGCCCACGGTGCCTCCTGCGGCCCAGTCGGTGCCACACCTGCAGGCACCTCTCTCGGACCCCAGCCAGCCCCAGGCCCAGCTGAAAGTGGCGCGGGAGTGCCCTCAGAGCGCCAAGGCCCCCAGCGGCTCTCGCTCCGGTGTCCGCAGCACCACGGGCTGCCCGCACCTCTCAGACAGCCAGCTGGCCCCTGGCCACGCCAGCAGCACTGGCAAACAGCAGAGGATAACCCGCCGCAGAGCCACCAACGGTTGGCTGCCCATCGGTCTGCCCGTGGAGAAGGAGGTCTTCATTGTGgGAGAGGAAGAGCCGGCGCTGAGGAGGTGTTATGAGGGTGTGCAGCGCGACGGCGAAGTGATCCGTGTCAGAGACACGGTCCTGCTGCGTTCAGGGCCCCGCAAGAAATCGCTGCCCTATGTTGCCAAGATCTCCGCCCTGTGGGAGGACCCCAAGACTGGAGAGTTGATGATGAGTCTGTTTTGGTACTATCGCCCAGAACACACTCAGGGAGGCAGaaatcccagcatgcactgtgAGAATGAGATTTTTGCATCTCGGCATCAGGATGAGAACAGCGTGGCTTGCATTGAAGATAAGTGCTACGTTCTGACATTAGCACAATACTGTAGATTTTGTGCCTTGGTGAAGCGACGCGGGGAGGGTCTCCCTGAAAGTATGCCCGTGGTGCCGCCCTCCCCAGAGTATGCCATCCCGGCCCACCGCCGAGTCCCCATGAGCATCGACCCGGACCTGGTGTTCCTCTGTCGCCACGTCTACGATTTCCGCTATGGGCGCATCCTCAAGAACCTGCAGTAGCGCTGCCCCGCGACGAGGAGTGCCAGCCTGCCGGCACCGCCTGcaaaccccccaaccccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000339 True 2730 mRNA 0.58 7 12076056 12090893

Neighbor

gene id symbol gene type direction distance location
AMCG00000351 ivd,LOC107719458 coding upstream 34133 12034131 ~ 12041923 (+)
AMCG00000353 NA coding upstream 189159 11866155 ~ 11886897 (+)
AMCG00000332 NA coding upstream 236376 11836793 ~ 11839680 (+)
AMCG00000324 jmjd7 coding upstream 341557 11732396 ~ 11734499 (+)
AMCG00000323 NA coding upstream 361438 11704595 ~ 11714618 (+)
AMCG00000340 rpusd2 coding downstream 71098 12161991 ~ 12169461 (+)
AMCG00000346 NA coding downstream 111277 12202170 ~ 12208132 (+)
AMCG00000347 NA coding downstream 163535 12254428 ~ 12285830 (+)
AMCG00000344 LOC106521412,LOC103377579,LOC108270303,LOC102202359,LOC100696514 coding downstream 253974 12344867 ~ 12345699 (+)
AMCG00000345 NA coding downstream 265948 12356841 ~ 12364023 (+)
G149739 NA non-coding upstream 48613 12027227 ~ 12027443 (+)
G149674 NA non-coding upstream 275316 11800000 ~ 11800740 (+)
G149673 NA non-coding upstream 276178 11799561 ~ 11799878 (+)
G149672 NA non-coding upstream 278049 11797375 ~ 11798007 (+)
G149668 NA non-coding upstream 281200 11793367 ~ 11794856 (+)
G149747 NA non-coding downstream 1494 12092387 ~ 12098372 (+)
G149869 LOC105909576,LOC107704376 non-coding downstream 742646 12833539 ~ 12841673 (+)
G150042 NA non-coding downstream 1321972 13412865 ~ 13413064 (+)
G150066 LOC100846954,LOC107575789 non-coding downstream 1558510 13649403 ~ 13650051 (+)
G150106 NA non-coding downstream 1648883 13739776 ~ 13746116 (+)
AMCG00000352 NA other upstream 81030 11965555 ~ 11995026 (+)
G149525 LOC100846954,LOC107575789 other upstream 1540919 10534590 ~ 10535137 (+)
G149424 NA other upstream 2105255 9969324 ~ 9970801 (+)
AMCG00000281 cpsf2,LOC106608196 other upstream 2484968 9561557 ~ 9591088 (+)
AMCG00000286 sos2 other upstream 2529645 9514822 ~ 9546411 (+)
G149859 NA other downstream 588777 12679670 ~ 12727903 (+)
AMCG00000381 NA other downstream 875984 12966877 ~ 13030853 (+)
G150069 NA other downstream 1599946 13690839 ~ 13692589 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 2042245 14133138 ~ 14153840 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 2840885 14931778 ~ 14944400 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012206 bahd1 coding NC_007128.7 CM002901.2 31276437 ~ 31344400 (-)
grasscarp (Ctenopharyngodon idella) CI01000189_03294767_03307517 BAHD1 coding CI01000189 null 3294349 ~ 3307855 (-)