AMCG00000340 (rpusd2)


Basic Information

Item Value
gene id AMCG00000340
gene name rpusd2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12161991 ~ 12169461 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000340
CTCGGACCTCAGCGATGCCGGGCGGGCGTGCGGTCGCAGCAGATCGATATCGGGTGGTCTTCAAAGTCTAAACATGTGTTCATAATGACACTGTAGCATTTTATTGTGAGGTTTTCATTGCAAAACGACctatgtattataattgcaTTACGATGTTCTCATTACATATGtaacttttgtgttgtttatttaggAATCTGTTTTAAAGGGGCCGAAGACATGTGttcctcctgtgtgtgtgttactcttCAACGTGGAGTAATTGAACAATGATTGGtctttaacttttgttttttaattgcgtTAATACACGTTAATTTGTGATCTGCTTATTTACAAAACGTCGTGTGATATATGTATTGTCATAagtaatgtttttcattctctCTTTGGGGTCTGTAACAGTATACCCCAATTTCATTATCCATTTAATCTCCCATTCGGCAGACTTGCTATTAATAAGTGTACATCCAAGTGCAACTCATAAGTAGTGTAGGCTACATGTATATGATATGTATTGTACTTTAACGTGAATAAAATATCCTTATAATTAACTTAGAAAAGtgattatatttagatttgaataTAGGGCATTCATAGATTAAACAACAAAGTAGAGTCCACATTGTCTTTAATGTCCCTGGGGTCATACTCAGGTCACTGCCAAGTGCTGGGAAGTACATGAATGCATCCTTTACATATGCTGACCTTTGTTcaattgtgtttttggttgttaCTGGAAGGCTGACTCTTCATGGGAGATGAGACCAGTGATCCGATTGGCTGCAGTGGCTTTGCCTATGGGCGTGCTGCTCTCCAGGACCATGGCGTGGATGTCCAGTGGCAGAACACATGCAGAGCTCGTGACCCGTCTCCGGGATCATGGAGTCATTAAGTCTGATCGTGTGTTTGAAGCCATGCTTGCCACCGATCGTGGGCTCTACACCAAGGACTTTCCCTATGTTGATGCTCCACAGTCCATAGGGTACAAGGCTACCATCAGTGCCCCACACATGCATGCCCACGCCTTGGAGGTGCTGAGCGACAAGCTGACCGAAGGAGCCACTGCCTTGGACGTGGGCTCTGGGAGCGGCTATCTCACCGCTTGCTTCGCCAGGATGGTGGGTTCCTCGGGGAGAGTGGTGGGTGTGGAACACATTGCCGAGCTGGTGGAGGAGTCCATCCGGAATATCCGTCTGGATGACCCTGAGCTGCTCACCTCGGGACGTGTCAAACTCCTTGAGGGAGATGGCCGGCTTGGTTTCCCAGAGGGAGCCCCCTACGATGCCATCCATGTGGGGGCGGCAGCACCTACACTTCCAAAAGCACTGCTGGCCCAGCTGAAGCCAGGCGGGAGGCTGGTCTTGCCTGTGGGCCCCGAGGGAGGCGGCCAGGTGCTGGAGCAGTACGACAGACAGAGCGACGGCACCTTCACCAGGAAGGCACTCATGGGTGTCGTGTATGTGCCCCTCACTGACCAGGACCGCCAGTGGCCCAGATCCGCAAACAAGCAGCGGCTGTTCGTGTTGAACATAAAGTGGTCAGAACTAAACGCGAAGAGCTCGGGGTACAGTAGAGACCCAGATCATGAAATTGACGAAAATCAACATAACAATATAAGTAAGATTCCATTCCAGAAAGCCGGCAGGATTCCACTATTTTATTCTACAAAAGTGACCGAACCAGCCACTACCAGAGCTATCTGGTatcaggagaaaataaaatgtgcttttcttacCCGCTCCCAAGCCACAAATAAACCGAGCCGCTTCTTCCATCACATGAATTCGGGCCGATTCGGGCAAATGGAGACAAATGAATCCGAAGCGAAGCAGGAAAGCGTGAGTGCCGCGGTCGAGCCGAGCGACAGGGAGATCCCTGCAAAACGGAAAAGTGACGAGATCGACGAACCGGGACTCGGCCGCCGCGGAAAGAAGCGCAGAGGCCGAGGGCTAAAGAAGCTTCCCCCGGGGGAGAGGTACGTCCCTCCACCGCAGAAACGAAACCCCCAGGTCAGCTTCGGCCAAGAGCATTTCGACGAGACGAGTTACTACTTCGAGGGAGGTCTCCGCAAGGTGCACCCGTACTACTTCGACTTCAAGACTTACTGCAAGGGGCGGTGGGTCGGGAAGAGCCTGCTGGAGGTGTTCCGCTCCGAGTTCCGGGCCGAGCCGCTGGAGTACTATGAGAAGGCTGCGCAGAAAGGACGGATCCGACTGAACGAGAAGCCGGTTGACAGCCTCAGTGTGATTCTTAAGAACAATGACTTTATGAGGAACAGGATCCACCGCCACGAGCCACCGGTGAGCGCCCGCCCCCTGGAGATCCTGGCGGACGATGGGGAGCTGGTGGTGGTGGACAAGCCGGCCTCCCTGCCCGTTCACCCCTGCGGCCGCTTCCGGCACAACACGGTGATCTTCATCTTGGGCAAGGAGCACGGCCTGAGCGGCCTGCACACCGTGCACCGGCTGGACCGCCTCACCTCCGGGGTGCTGCTCTTCGCCCGCACGCTGGCGGCCTCGCAGAAGCTGGACCAGCTGGTGCGTGACAGGCAGCTGGAGAAGGAGTATGTGTGCCGTGTGCAGGGCGAGTTCCCCGAGGGTGAGATTGTGTGCGAGGAGCCCATTCTGGTGGTGTCCTACAAGGTGGGGGTGTGCAGGGTGGACCAGCGAGGTAAGCCCTGCCGCACGGTGTTCCACAGGCTCAGCTCAGACGGCTGCTCCAGCGTGGTGCGCTGCCTGCCCCTCACCGGCCGCACCCACCAGATCCGCGTCCACTTGCAGTTCCTGGGTCACCCCATCCTCAACGACCCTATCTATTGCGCTGCAGCCTGGGGGCCGGAGAGAGGCAAGGGAGGCGTCACTGGTTTGGATGACGAGCAGCTTCTCAAGGCTCTTGTGGAGGAACACCAGGCCAAGGAGAGCCTGCACCTCCTGGACATCGCTGAGGTAGACCTCCCTGACCACAGTCTGCTTCAGAACAAAGATGTAGGTGGCTGTGGGATGGCTGGAGGTAAACCAGATCTTTCGGTGTCTCAAAAGCAGGCTGATACATGTGTTGGAAAGAGTGATGCTGTAGGTGTCTCTGATATCACTGAAGTAAATGTGGCAGCTTCTAATTTAAACAAGGTTGACTGTTGTATGCTGGACCAGCaacacatgtttttaaaaagtaatgacaCCGAGAGTGCTTGCAAAACAGATGGCAAGTCTGGACGTGATTCAGGCACTAATGGGGTTCCTCCAGGACACGCTCTGGACCGTACCACTGTGGAAGGGAAGTGTAATGAAATGCAAGGTGATCTCACAAAGAACCTGGACTCCGGCGGGGAACTTCCAGTGCAGACCGAATCGGAAGAGGCTGGCACTAAGTCGGACTGTCCCAGTGTGACTGTGGTGAGAGATCCTTTATGTGGGGAGTGTAAGATTGTTCGGAAGGACCCCACGGAGAAGGATTTGGTAATGTACCTGCATGCACTGAGGTATAAAGGACCTGACTTTGAATACTCCACTCGCCTGCCTGACTGGGCCAAGGAGGACTGGCAGGAAGCCTAAAGAGCCCTCCTTACTTTAAAGAGGTCTGTAAGTGGGTCCCCAAGCTTAGATTTTCTGGTTGAAGAAGTATATATCATCCAAccgttttttgtttctttttcttaccCTTTGCTATGACATATGTCTAATATTTCCTTTGGAAATCCCATTAAAATTAGCATTATGGGTGATCATCAGGTACATTGCCAGCTGTATGAAAGTACCTTCAATGTACTTAACACTGTTCAGGTGTTTTatgattggttttattttaaaagcaggccTTTGTGCAGCACAGATTATAtcaacagaatttaaaaaatacagtttttacaTTGATTGCTTTAAATACACCAATTGTTTCCTTAATAAgttcattgaaatgtattacatttgtctGGGTTGTCTTGTGCTCATGGGAGTTTACTTTTCCATGTGTGATGCCACTGTTTCTGGGCATctgtatcaaataaataattgaaaggaaataattttaCTCTCGCT

Function

symbol description
rpusd2 Predicted to enable pseudouridine synthase activity. Predicted to be involved in enzyme-directed rRNA pseudouridine synthesis. Predicted to act upstream of or within pseudouridine synthesis. Orthologous to human RPUSD2 (RNA pseudouridine synthase domain containing 2).

NR:

description
PREDICTED: RNA pseudouridylate synthase domain-containing protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000340 True 4037 mRNA 0.51 10 12161991 12169461

Neighbor

gene id symbol gene type direction distance location
AMCG00000339 NA coding upstream 71098 12076056 ~ 12090893 (+)
AMCG00000351 ivd,LOC107719458 coding upstream 120068 12034131 ~ 12041923 (+)
AMCG00000353 NA coding upstream 275094 11866155 ~ 11886897 (+)
AMCG00000332 NA coding upstream 322311 11836793 ~ 11839680 (+)
AMCG00000324 jmjd7 coding upstream 427492 11732396 ~ 11734499 (+)
AMCG00000346 NA coding downstream 32709 12202170 ~ 12208132 (+)
AMCG00000347 NA coding downstream 84967 12254428 ~ 12285830 (+)
AMCG00000344 LOC106521412,LOC103377579,LOC108270303,LOC102202359,LOC100696514 coding downstream 175406 12344867 ~ 12345699 (+)
AMCG00000345 NA coding downstream 187380 12356841 ~ 12364023 (+)
AMCG00000357 yy1a,LOC108411685,LOC108258103,LOC101066055,LOC108425622 coding downstream 215947 12385408 ~ 12399523 (+)
G149747 NA non-coding upstream 63619 12092387 ~ 12098372 (+)
G149739 NA non-coding upstream 134548 12027227 ~ 12027443 (+)
G149674 NA non-coding upstream 361251 11800000 ~ 11800740 (+)
G149673 NA non-coding upstream 362113 11799561 ~ 11799878 (+)
G149672 NA non-coding upstream 363984 11797375 ~ 11798007 (+)
G149869 LOC105909576,LOC107704376 non-coding downstream 664078 12833539 ~ 12841673 (+)
G150042 NA non-coding downstream 1243404 13412865 ~ 13413064 (+)
G150066 LOC100846954,LOC107575789 non-coding downstream 1479942 13649403 ~ 13650051 (+)
G150106 NA non-coding downstream 1570315 13739776 ~ 13746116 (+)
G150303 NA non-coding downstream 2295431 14464892 ~ 14465302 (+)
AMCG00000352 NA other upstream 166965 11965555 ~ 11995026 (+)
G149525 LOC100846954,LOC107575789 other upstream 1626854 10534590 ~ 10535137 (+)
G149424 NA other upstream 2191190 9969324 ~ 9970801 (+)
AMCG00000281 cpsf2,LOC106608196 other upstream 2570903 9561557 ~ 9591088 (+)
AMCG00000286 sos2 other upstream 2615580 9514822 ~ 9546411 (+)
G149859 NA other downstream 510209 12679670 ~ 12727903 (+)
AMCG00000381 NA other downstream 797416 12966877 ~ 13030853 (+)
G150069 NA other downstream 1521378 13690839 ~ 13692589 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 1963677 14133138 ~ 14153840 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 2762317 14931778 ~ 14944400 (+)

Expression


Co-expression Network