AMCG00000346


Basic Information

Item Value
gene id AMCG00000346
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12202170 ~ 12208132 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000346
ATGCCAAGCACTGAGCCCTGCAGTTACGCACAGCCTACACGGCAGCTGGCGAGCAGGACGGACAGCTTGCTCTTCCCTGCCAGCGAGATGCACAGCCTGAGCATCCCGGTCTGCACTGCAGCGCTCTTCACCTTCTTCTTCATTGCATCCAAGTTCGTCCCCCCCCGCCGGCACTTGCAGGTAGAGGACCGAGCTCTGGTCAGTGGACCGCTAGACCCCCTTGCTGCCTCCAAACGAAATGCCTTAAGAAAGGAGATCAAGGAAAGGCGCAGGGAGCTTTTGCCTTCCTACACTGCGAAACTGTCCCACCAAGACCCGAGTGCCTACCTGGAGAATGACGTCAACCTCGCAGCAGCAGGGACAGACCTGGACCTTATGGGCTGCAAGCATCTCCGTCACGTTCAAAACTTACAGTTCCTCGGGTCGGGCTACACCAAGGCGGTTTTGAAGGGAGCTTTGCCCCGAGGATTGCTTATTGCTCTGAAATCGGTGAACCACCAAGGGACTGACATGAGGAGGTGTGTGGAGGACTTTGGAGACGTGGAAGGGTGCAGTGAGCTGGTGTCCTACAAACTGATCAAGGAAATAATGCTGTTACAAAGACTGCAGCACCCCAACATCATTAAGCTCCATGGCCACTGTCAGGGCAATAAGTGGGGCAGCGGCATCACCGCAGCGCTGGAGCTGGGCTCTCCACTCCAGATGATCCAGCTTCTGCAGAGCCCCTGGGAGGAGCGCTTTCGGATGTGCCTGAGCCTGGTGAGGCTTCTCCATTACCTGTCTGTCTCCCCCCTGGGCTCGGTGGCTCTGCTGGATTTCCAGCCGCGGCAGTTCGTCACTGTGGCCGGGGAGCTGAAGCTGACCGACCTGGACGACGCCACGGCGGGGGATCAGGACTGCAGCACAGACACCGACTGCACCCTGACCTTCCCACAGAACAACTTCACGGTCCCCTGCACCAAGGGCGGGACCTGTCAGGGTCTCAACGAGAAGAGGAACCTTTACAATGCATACAgGTATTTTTTCACTTATCTGCTGCCCCATCGAGCTCCGCCCACCCTTCAGCCTCTTGTGGATAAAATCATGAATTCAACAAGAGGGCTGAGCAGTGGGATAAACGAGATTCTGGAAGCATTTGAAGAAATCTTACAGTTATACATGTCTGGACAATACCTGAAGAACCTGTCACCATCTTTACTCAGAGATTATACTGCCGTGAAAGGGATGAGGGTGGCGGGCAGCGTCGACTACCGATGCTGGCCGTCGTACAACCAGCAGGGCTGCGTCCTGTCTGTGCACAGTGCCAGGGAGGCAGCGCACATCTGCAGCTCCCACGCGCAGTGTACCAGCTTCACGATCAGCAGCCAGAGGACCTGGGCAGGGCGGTTCCTAGCatcattcagaagtggttttcgaGATCTGATACCAGATGTTAATTCTGCTCTGTATGTGAAGAGGGGTGGTAGCTCCAGGGCAGCAGCGCAAAGAAAAGAGAGGGGATCAGAGGTGGGGGGAGCTGGGGCTGGAATGTCTGAAGTAAattaatatgatatatttataagATTTTGCACTGCAGTTGTTTGATCTTCCTGCCAATCTCTTTGTTGCCAAGAATCGTTAAGGGATTTCCCTTGAGGTATAATTAACAAAAACCTGCCTactaatttttcattttatttttttattttgttttggttatatttatgataaAGTGTTTGGAACTTCTAGTTGTAGATTTTAAGGATCAAACGGAGAATTGTaggacagtaaaaaaaaaatgaacacaaatacaCTTTGATGTTGGTAAGATCAGACGTTTTGCAGCTCTGTGCtggatttataaaatataaaaggaatCTACTTCAATGactattatttataaagcaaataattacTGGAACCACACCATTTATCTAAGATAAGTTCAAACACTCATATATGAGTTGTGTGGTTAAATTCTCTTGcttaatgtaaaaaacaaatgcaacaaaaccCTAAATGATGTTCTCTTCGAAACTAAGGGCTGCTGATGTAATTACATGCCGAGTTAGGTGTGTTATATTGATCTGATTCTGCATCATTTACATAATCACACCTTGTGGGTGTTAATGAACTTTCTTGTTCATTCTTGTACCTTCTTTCAAGGAAAGAAACTCTATTTATTGAACTGGGACAGTAACCAATTGATGaga

Function

GO: NA

KEGG:

id description
K17548 PKDCC; extracellular tyrosine-protein kinase PKDCC 

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000346 True 2192 mRNA 0.49 7 12202170 12208132

Neighbor

gene id symbol gene type direction distance location
AMCG00000340 rpusd2 coding upstream 32709 12161991 ~ 12169461 (+)
AMCG00000339 NA coding upstream 111277 12076056 ~ 12090893 (+)
AMCG00000351 ivd,LOC107719458 coding upstream 160247 12034131 ~ 12041923 (+)
AMCG00000353 NA coding upstream 315273 11866155 ~ 11886897 (+)
AMCG00000332 NA coding upstream 362490 11836793 ~ 11839680 (+)
AMCG00000347 NA coding downstream 46296 12254428 ~ 12285830 (+)
AMCG00000344 LOC106521412,LOC103377579,LOC108270303,LOC102202359,LOC100696514 coding downstream 136735 12344867 ~ 12345699 (+)
AMCG00000345 NA coding downstream 148709 12356841 ~ 12364023 (+)
AMCG00000357 yy1a,LOC108411685,LOC108258103,LOC101066055,LOC108425622 coding downstream 177276 12385408 ~ 12399523 (+)
AMCG00000358 NA coding downstream 210647 12418779 ~ 12422714 (+)
G149747 NA non-coding upstream 103798 12092387 ~ 12098372 (+)
G149739 NA non-coding upstream 174727 12027227 ~ 12027443 (+)
G149674 NA non-coding upstream 401430 11800000 ~ 11800740 (+)
G149673 NA non-coding upstream 402292 11799561 ~ 11799878 (+)
G149672 NA non-coding upstream 404163 11797375 ~ 11798007 (+)
G149869 LOC105909576,LOC107704376 non-coding downstream 625407 12833539 ~ 12841673 (+)
G150042 NA non-coding downstream 1204733 13412865 ~ 13413064 (+)
G150066 LOC100846954,LOC107575789 non-coding downstream 1441271 13649403 ~ 13650051 (+)
G150106 NA non-coding downstream 1531644 13739776 ~ 13746116 (+)
G150303 NA non-coding downstream 2256760 14464892 ~ 14465302 (+)
AMCG00000352 NA other upstream 207144 11965555 ~ 11995026 (+)
G149525 LOC100846954,LOC107575789 other upstream 1667033 10534590 ~ 10535137 (+)
G149424 NA other upstream 2231369 9969324 ~ 9970801 (+)
AMCG00000281 cpsf2,LOC106608196 other upstream 2611082 9561557 ~ 9591088 (+)
AMCG00000286 sos2 other upstream 2655759 9514822 ~ 9546411 (+)
G149859 NA other downstream 471538 12679670 ~ 12727903 (+)
AMCG00000381 NA other downstream 758745 12966877 ~ 13030853 (+)
G150069 NA other downstream 1482707 13690839 ~ 13692589 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 1925006 14133138 ~ 14153840 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 2723646 14931778 ~ 14944400 (+)

Expression


Co-expression Network