AMCG00000347


Basic Information

Item Value
gene id AMCG00000347
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12254428 ~ 12285830 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000347
ATGTTCCCCTTCTGTCTCCATGGTGCTCTGTTTGGAGGACTAACTGGAgtctccctctgtgtctgtgtagatGACAGTGCCTCGGCTGCCAGCAGTATGGAGGTTACTGACCGCATCGCCTCCCTGGAGCAGCGTGTGCAGCTGCAGGAGGATGAGATCCAGCTGCTGAAGTCTGCACTGGCTGATGTCGTCAGGCGGCTCAACATATCCGAGGAGCAGCAGGCCATGATGAACCGAAAGGGACCCACCAAAGACCAGACTGCTGTGAAAAAATCCCCTCCTTCAGAGAGTGATAGATCAGGCAGTGCTGGCAAGCCAGCCAGACCCCTAATGCAGGCCTTGCCCTTGAGGCCAACAGTGAACAATGGCACCGTACTACCAAAGAAAACCAGCACACTGCCGTCCCCCTCGGGCACCAGGAAGGACACCTCATCACCAGCAACCAAGAGTACTGTGAAGAGAACGAGCTCGACGGAGCGTGTGGGAACTCTGAGCCGCAGGGAGAGCACCGGAGAGTCCAAGAACAACCGCACCCGAACAGGCTCCACTGGCAGCAACTCCAGCGGCAAGAAGAACAGCGACAGTAAACTGAAGGATCCCGTATTCAGTGCAGAGGAGGgatatgtgaaaatgtatttgagagGCCGCCCCGTTACCATGTACATGCCTAAAGATCAAGTGGAGACCTACAGTTTGGATGCGAAATCAGATCTGCCAACCAAGAAGCTCAAACTGGACTGGGTATCCAGTTATGGATACAGAGGCCGAGACTGCCGTTCCAACCTGTACCTGCTTCCCACCGGGGAGACGGTTTATTTCATCGCCTCAGTGGTAGTGCTGTACAACGTGGAGGAGCAGCTCCAGAGACACTACACTGGACACACGGATGACGTCAAGTGCCTAGCAGTCCATCCAGACAAAATCACCATAGCAACAGGACAGGTCGCAGGCACATCCACCGATGGCAGACAGCTGCCACCTCACGTGCGGGTCTGGGACTCGGTGAGCCTGAACACACTGCACATCATTGGGACTGGCTTCTTCGACCGTGCGCTGGCCTGCATTGCCTTCTCCAAATCGAACGGAGGCGGTACACTGTGTGTGGTGGATGACTCCAACGATCACGTCCTCTCTGTGTGGGACtggcagagagaggagaggctTGCAGATGTCAAGTGTTCCAATGAAGCCGTATTCACAGCAGATTTCCACCCCACTGACACCAACATCATCGTCACCTGTGGAAAGTCTCACCTTTACTTCTGGACTTTAGAAGGGGGCTCCTTAGTGAAGAAGCAAGGACTGTTTGAGAAACAAGAGAAGCCCAAGTTTGTCTTGTGTGTGACTTTTTCAGAAAATGGTGACACAATAACTGGAGACTCCAGTGGCAATATCCTGGTCTGGGGAAAagGCACTAATCGGATTAGCTATGCCATCCAAGGGGCACATGAAGGAggcatttttgcactttgtatgtTGCGCAACGGCACTTTAGTGTCGGGCGGAGGAAAGGACCGCAAGCTCATCTCCTGGGATGGGAACTACCAGAAGATACAGGCTGTGGAGATTCCCGAGTCATATGGACCTGTGCGCACCGTGGCAGAGAGCAAGGGAGACTGCGTGCTGATTGGCACCACCAGAAACTATGTCCTGCAAGGCACTTTACTCGGGAATTTCATACCAATCACCCAGGGTCACACGGATGAGCTGTGGGGCCTGGCAGTGCACCCTCGGAAACCACACTTCCTGACTTGCGGCCACGACAAGCATATCAGCCTCTGGGACTCCTCCACTCACCAGCCCATCTGGAGCAAGACCATGGAGGACGCAGCCCAGTCGGCTGGTTTCCATCCATCTGGAACTGTTGTCGCTATCGGAACACAGACTGGCAGATGGCTGGTTCTGGACACCGAATCCAAGGACCTGGTCACTGTTCACACGGATGGGAATGAGCAGCTGTCAGTTATGCGCTATTCACCGGATGGCACTCTCTTGGCAATCGGATCACatgacaattacatttacatctaTGGAGTTGTTGACAATGGCAGGAAGTACAGCAGAGTGGGAAAGTGCTCAGGTCACTCAAGCTTCATCACTCATCTGGACTGGTCTGTGGACTCCCAGTACCTAATGTCCAATTCAGGAGACTatgaaatactgtactGGATTCCCTCTGCCTGCAAACAGGTGGTCAGTGTGGAGACAACAAGGGACATCGAGTGGGCCACATGCACCTGCACTCTGGGCTTCCATGTCTTCGGGCTGTGGCCAGAGGGCTCAGACGGAACGGATATCAATGCGGTGTGCAGATCGCATGAAAAGAGGCTCCTCGTCACCGGAGATGATTTTGGAAAAGTCCATCTCTTCTCATATCCCTGCTCACAGTTCAGGGCTCCAAGTCACATCTATGGTGGACACAGCAGTCATGTGACCAATGTGAACTTCCTGTTTGATGACAGTTACCTCATTTCCACCGGGGGGAAGGACATGAGCATCATGCAGTGGCGAGTCGTGTAAACGACGCCGGGGGGACGGAGCTCCCACTCCACAGAGGGGGGGCCGCCCATCCCAGAAGGCTGTGCTGCACATGGAGCTACAGAGGCATACGCAAAGggacaacaacagcaaaaaaaagacAGGCTGGCTGACACGTCGGAAtcggttttcttttcttctttttcttctttttttttcgttCACAGctcaggaaacaaacaaagaaaagattttatttaaaatgtacacggCAGTGCTCCTCTTGTAACAGTATGCTCTAAACCACAGGCATTGAACCATCTCGGAACGACAGACCGGCACGaccttccctttcttttttctgctaGTTCTCAGAGAAGGTCGAGCTCACAGACTTCTACCGCTTAGGTATTTATGTCAGCAGATCTAAAGATCAGAAACTGTCTGGCTTAAGTCCAGCTACTGTGTTTCTCCTGTCACACTAATGCCTTTTAGAGActgtaaatatgtgttttttaacGTCACTGGTTGTGCTGTGTGCAGCTGTGAGGTCAGCGCAGTTCCTTCTTATTGACAAGCTACACCTGCAGCCTTGGTAAAGTGCTGACTAGGCTCCTGCCGCCTGCTAAACTGCACTGCCCCACCTCGACCAAGTCAACTGTGCTCTCTCTGTCACAACTGCCCCACTCAAACCCTAACCCTCACTCACccctgccttttttattttttacttaagtCTTACAACTACAGCACAACAGTTTGCTATTCAACCTTTCactccaaaacagaaaaatatctgGCATCGGTGCATGTGGCTTTCACTGTCTGTAGTAGAACATGTTTAGATTTCATCCGAACAACCAGCGATCATCTCTTCAAAACATCGAGGTCAGACATTCTCACAGTATTTGAACACGGAgggcttttttaaaatatagacctttgaataaaaaatagaaacacacacacacatatactgttACAAATTGCAAGCACAtaagtatacaaatatatattacagtaaacCAAACAGAGTAGTTATACTGTACATAACTCATCCCATCCCATTATGAATTGTTTCTGAagataaaaaatgcatttagactCACgcttattaataaaattgaCAATTTATCCTTAAAAAAACGAAGCTGTTTATTTAAACCAGGGTTAAACGTTATTTATTGGATGCTCTCTTCAGCCCGTGGTTCCTCTTGATCCAAAGGTTTCTGGGCTCCTGTGAGGTAAGCCTGGAGGTTCACATCCCTGCAAACTGTGGATTGTGGACATAGGGCATTGTCAAGTGTCCCAGGACTACCAAGGCGTGGCTGATGAACTTCGGTACAGTCTGGAATGTATTGGCAAAGAAGAGCCGCTCCGAAACAGCCCTTGTGTGACATTCATAAACACTATTCTTCATGAGCGAGCAGATTCAAGCATATTTTCGGCAGGAACATACTAACGACATAGGGTCCATGTTCGACCACGACCAAACACCGTTGTCACTTTACGGTTTGGGTTTTCTCTGACTCATCATTAGCGAGTGTCACCATCAATAATCAACTATCATGAACAGGGATTTAATCAACAACCATGGAACCATATTCAGAGCTACATAAAGGCAGCAGGGGATCTCTTTGAATAAAACCAGATCTGTGGACACGACCAGAAACCATTTACTTTTGGAAAACATTCAAAGAAAACGTCAGCTGCATTGTTGGTCGTTTTACATAAAAGAACATCATTGTTGCACTATTCACCCACAGAGGTACAACGATTTAACCATGACGGCACCACTTAgaaatgtgcacattttgtGGAGTGGTATGGCATAGAAAATAAACgacaaaaggaaaactaaaCTGTTGATTGTTGAGGATAAACTAAAGATTACGATGTATTGTTTACAATGGGGAATGTATGTAGAAATATGGTAAACATGGTAGCTTCCATTATAACACTAATCTAACTTTCATTTGTGATTGACAGTAAATATCTATTAAATTCATTCAATCATGTATGGCTGTCGTGCTCATGGTGTGAAACCCAATATGTGAACACccttctgtctctgtctcgCCAACTCACATGTCAAGGGATTGCCGCAGGTCTGAGCCAAATTCCACATCGAAA

Function

GO: NA

KEGG:

id description
K18595 EML1_2; echinoderm microtubule-associated protein-like 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000347 True 4611 mRNA 0.48 22 12254428 12285830

Neighbor

gene id symbol gene type direction distance location
AMCG00000346 NA coding upstream 46296 12202170 ~ 12208132 (+)
AMCG00000340 rpusd2 coding upstream 84967 12161991 ~ 12169461 (+)
AMCG00000339 NA coding upstream 163535 12076056 ~ 12090893 (+)
AMCG00000351 ivd,LOC107719458 coding upstream 212505 12034131 ~ 12041923 (+)
AMCG00000353 NA coding upstream 367531 11866155 ~ 11886897 (+)
AMCG00000344 LOC106521412,LOC103377579,LOC108270303,LOC102202359,LOC100696514 coding downstream 59037 12344867 ~ 12345699 (+)
AMCG00000345 NA coding downstream 71011 12356841 ~ 12364023 (+)
AMCG00000357 yy1a,LOC108411685,LOC108258103,LOC101066055,LOC108425622 coding downstream 99578 12385408 ~ 12399523 (+)
AMCG00000358 NA coding downstream 132949 12418779 ~ 12422714 (+)
AMCG00000359 NA coding downstream 144228 12430058 ~ 12459938 (+)
G149747 NA non-coding upstream 156056 12092387 ~ 12098372 (+)
G149739 NA non-coding upstream 226985 12027227 ~ 12027443 (+)
G149674 NA non-coding upstream 453688 11800000 ~ 11800740 (+)
G149673 NA non-coding upstream 454550 11799561 ~ 11799878 (+)
G149672 NA non-coding upstream 456421 11797375 ~ 11798007 (+)
G149869 LOC105909576,LOC107704376 non-coding downstream 547709 12833539 ~ 12841673 (+)
G150042 NA non-coding downstream 1127035 13412865 ~ 13413064 (+)
G150066 LOC100846954,LOC107575789 non-coding downstream 1363573 13649403 ~ 13650051 (+)
G150106 NA non-coding downstream 1453946 13739776 ~ 13746116 (+)
G150303 NA non-coding downstream 2179062 14464892 ~ 14465302 (+)
AMCG00000352 NA other upstream 259402 11965555 ~ 11995026 (+)
G149525 LOC100846954,LOC107575789 other upstream 1719291 10534590 ~ 10535137 (+)
G149424 NA other upstream 2283627 9969324 ~ 9970801 (+)
AMCG00000281 cpsf2,LOC106608196 other upstream 2663340 9561557 ~ 9591088 (+)
AMCG00000286 sos2 other upstream 2708017 9514822 ~ 9546411 (+)
G149859 NA other downstream 393840 12679670 ~ 12727903 (+)
AMCG00000381 NA other downstream 681047 12966877 ~ 13030853 (+)
G150069 NA other downstream 1405009 13690839 ~ 13692589 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 1847308 14133138 ~ 14153840 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 2645948 14931778 ~ 14944400 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_03165381_03189571 EML1 coding CI01000189 null 3164466 ~ 3189571 (-)