AMCG00000353


Basic Information

Item Value
gene id AMCG00000353
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 11866155 ~ 11886897 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000353
CTCAAGTGCGGGGCGGAAGTTACGTCTTGTTGGTTGCGGAAGAACTTCAGAGCGGGGCGGAAGTGGCGGCAGCGCACGTTGGAAGTGTAGCTGGAAGTGAAGGCTGATTGTGGGACAAGTCTTGGCGAATTAGAAGTGTGTGAGATCCTGGAATAGAAATCTGCATCTAAAACTGTGCGACGGGAGTGATGTTGGGGCGACCCCAGCCCGGTGACTCGGAGGCAGACCTCCTGCGCTTTCAGCAGCAGTTCCTGGCGGCGGGGGCAGAGCCAGCAGTGCATGTGGTGCGCCGTCCCGACAAGCGCAGGGGAGAGACGGGGACCGAGGACGGCTTGCCAGAGATGGAGCCAAGCCACAGAGACGTTGTGGACATCCCTGAGCTCCCAGATCAGGTGCCCTCTCTGACCCCGGCACCTCCCAAAAAGTCCCGCTTCAAATCTGAGCATGTGCACTTTGAGGACGAGGACCCTGAGGCCAAGCTGGACAGACACGATACTCATGTCACTGCGGTCTTGACTAAGATCATTGAGAGAGACACCAGCATGGTCCCTGTGTCCCTCCCAGAATTCACTGGGTCTGCTTTCCCCAAGGTGTTCCACAGGTCAGAGGTGAAAGAGCAGGCACCTGCGACCACTGGTAGAAAGAGCATTTTTGCCCAGAAAATTGCTGCTCGGAGAGCGATGGAGGACAGGGCTGGTTCGCACACTGACGCAGGGTGTGGGGGAACAAACTCGCGGGCTGGAACTGAGAGGTCAAACTCACTGCCAGCAGTAAGCATGGAGACTGAGCAGCCCGCTGCTCCGTGTGAAGATCCCAGGCTGGTGAGCTTTGTGAGAAGTAGAGATGGGTCAGTTCCTGTTGTGCGTCCTTCACACACACCGGCAGAGGGACTGGAGGACCAGGGTGCACAGgggagcacagacacacagacggacatCCAGGACTCACACTCAGAGGATGAACAAGTCGAGATGGAGAATGAGGAAGAGCAGCTGGACCCTGAACCCGAAGCTCCGATCACAGagGAGGAGCTGCCGGCCATGCAGGCTCGTTTTGATTTCTCCGGCGCTCTGATTCCCCCTACGGCCGACCTGCCCACGCACCTGGGACTGCACCACCATGGAGAGGAGCCTGAGCTTGCTGGCTACTCTCTCCAGGagctcttcctcctctcccggAGTCAGGTGACCCAGCAGCGCTCTCTGGCCCTCACCACCCTTGCACGGGTCCTGCGCAAGGCTCACTTGGGGGACTTTGCCAGCTGTTTGAAGGGCAGTGTTGTGTGCACTCTCCTGGATGCAGGCCTCCTGTTCCTGCTGAGATTCTCATTGGACGACAGTATTGAGGGTGTCATGGCCGCTGCGGAGTGTCTGGACCAGACTTTCTCCTGGCTCCAAGGTACCTCTACCTTCCCCTTGCTGCCCTCCActctggagcaggaggaggaggatgacgaAGAGGCTGAAGAAGGGGGCCAGGGATGGAGGAAGGAGACGGCTGAGGAAAAGGAGGAGAGGAAACCTGACTATGATGTGGCTCAAGCGGACGTTGTCAAGggCCTGTTGAGGATGAAGCTCTTGGCCCGGCTGCGCTACATCCTGGAAGTGGTGCGGCCAGCGCCCCGCGTGGTGCAGGAAGTGCTGGAGATCCTCACCAGAATCGCCCGCCACTCGGCCTCTGCTGCCAGCCAGGTGCTGGACTGCCCTCGGCTGCTGGAGACAGTGATGTCAGAGTTCCTGCCCTGCTCCTGGGCTCCTCCCCCGCCCACCCTGGAGAGGCCGCATGGGCTGCCTGTCGCGGCGGCGATGAAGCTGCTGAACAGATTGGCCGCCCGCGACCGTCTGTCCCGCTTCCTGGCCGTGGAGCCCGAGGAGCTCCTGCTGGAGCCGGGAGAGGCCCTGCGACTGTGCACTGAGGCTCTGAGGCTGTGGGGCGTGGCGGCTGGCTACGGACAGGCCTGTGACTTGTACAAAGACCTCTATCCCATCCTTGTGAAGGCCCTTCAGGCTGTGCCCAGAGCTGTGTCACAGACAGACCCACGGGATCCCCTCCGGCCCCTGGCCCTGCAGAGAGCACAGGCCCTGCTCACCTTGCTGAACAAAGTCACCCACACGGCCGGCTGCCACCAGGAGCTCCAGGCAGATCTGACTGGTTCTCTTGAAGGAGAGAGTCCGCCCCCTCCCCCGGTGCAGTGGGGTCACGTAACGGGGCTCCGGCCCTTTGTGGAGGGCTGGATGAAGGTGTGTGTGAGAGGCCTGGCCGACCCTGCGCAGCACGAGAGCTCGCTGAGCCTGGCCCCTGCCAACCTGCTTTACCTGGGGGCTTTCTACACACAGCTCAAAGCACAGAGCTCTTTCCGCCCGGTGGAGTGTCTTCAGGAGATGGAGAGCCTCACGGCAGAGGTCCTCCTGCCCCTGCTGTCCCATCAGGATGTGCGCAGCATGATCGACGCCTTGAAgtCCTGCTCTGCTGTCTGCAACTCCACGTCTTGCAGCCCAGGCCCTGAGGCAGTGCCTAGCCTGCCTGGCCTCGCCTGCAGCAGGGGCAGTCCCGCTCTGCGCCTGGCTGGCTCCGGGTCACCCTTCCCCTTGCTCACTGGGCTCTGCAGCCTGATCGATGCCATCACCAGCACTCACCGGGGGCTCACTGACAAGtttTCTGGCTTGCTCCTCTCAGACTCTCTGATTGGCTACCTGCGTGCCTGTTGCCATGCAATGCCAGCCCTGTCTCATTCCAGTGCCTGGCACCTGCGACATGAGTACCACCTGCTCCACCTGCTGCTGAAGATTGCCTCCAAACTGGTCCCAGTAAACCCAGAGGTTGCCAAGCAGGCATCGCTGTTCCACCAGGTTGCCATCGAGATGATACCATGGCTGTTGCCAGGCAGTGAGCACCTGGCCCATGACCTCCTGTCCACTGTGATCTTTAACCAGGACTTCCTCTCAGAGGGACGTTGTGGAGGTCCTGAAGCAGCCGATCTCTCTCAGCGCCTGCAGCTGCAGGACAAGGTCCCCTCCTCTCACCCCTCCCTGGGGTCCCTGCTGCAGGAGGCCTGTGCTCAGCTCCCTTCTGTGCGTGGCTGTTACCTCACTCACCTGGCTCATCTGGAGCCCAGTGTCCTGAAGTCCAGGGACTCTTACCTGGGCCGCACCCCCTGGGTGAAATCTCAGCTGCTCCCTGAGCTCACTGGGCCTGTGCTGCCCTCTGACTGGGCCTTTTTGCCGCTCGTCAGCCTGTACGAGCAGAGTGGGAAGGAAGAGTCTCGGGGGCGTCCTGTGGAGACCCTGCCCCCTGTCTCTGTGGAATCGGCTACACACTGTCTGCAGTGGCTGCTGGTCCTGGAGACCTGGCGCGAGGGCACACTGAGGGCTGTCCCACCTGCTGCCAAGCTGTGCCGCCTAGCCTGCCTTTTCCTGTCCAGCAGTGACCTGTTCCTGGAGCGCCCCGTGCAGCAGTACACCTGGGCTTTACTGTGGGCTCTGTGCCGCCCCTCCCAGCAGGATGCCCTGGACCTCAGTGTTCCGCCCCCCGGCGTGGCCTCCTTCCACGATTTCTACTCGGCTCTGCTTGCTCAGTTTGAAGCGGTGTCTTTTGGGGACCCGCTCTTTGGCTGCTTCCTGCTCCTGCCCCTCCAGCGGCGCTTCAGCGCGGCCCTGCGCCTGGCGGTGTTCGGGGAGCACGTGGGCCTGCTGCGCTCCCTAGGGGTCTCGCTGCAGCAGCTGCCCCTCCCTGtggagcagttcacctcccccCCAGAGGACTCGCTGGCCCTCCTGCATTTGTACTTCCGGGCCCTGGTGACGGGAGCGCTGCGCAGGACCTGGTGCCCTGTCCTCTACATGGTGGCCCTCGCTCACCTCAACACCTTCTTCTTCTCCCAGGATCCAGCCACACAAGACGTGGATGCTGCCCGAAGAAGCCTCCTGAGGAAGACCTACTGCCTGACTGATGAGATGCTGAAGGATCACCTGCTTCTGTTCAAGCAGCCGAGTGCAGAGAGGGATCTGGGCTTCGAGCTCTACGAGCAGCTGCCCGCCATCAGGGCCAGGCGGCTGGACAGCGTGCTGAAGAGAGAGGAGGGCAGGCCGGCCGAGCGGGACTGAGCTGGGCTGCttcacacagcacagactgaGGGAGTGTGTCTAGAGAAATGGACGGGCACGGAGGCCTTTCCTCCATGCCCACCTGACCCTAGTTGTCTTTTCTTGGACAGCTAGAGGCTGAGACCTCCCCTGGGTAATCCAGGAGGCCTGAAAGTGCTCATACTCCAGCATTGGGTTGGTCTGTGTAAGGGAGATCTGCAGAGTGAGGTAAGGCAGGAGAGAGTCTTAGAGATGTGGAAGATGAAGTGCTTACTGTTGTCTCCTGTACCAAGTACTGTGTGCTGATTAGAATAAAAGGCA

Function

GO: NA

KEGG:

id description
K20826 RPAP1; RNA polymerase II-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000353 True 4403 mRNA 0.61 24 11866155 11886897

Neighbor

gene id symbol gene type direction distance location
AMCG00000332 NA coding upstream 26475 11836793 ~ 11839680 (+)
AMCG00000324 jmjd7 coding upstream 131656 11732396 ~ 11734499 (+)
AMCG00000323 NA coding upstream 151537 11704595 ~ 11714618 (+)
AMCG00000326 NA coding upstream 177676 11685554 ~ 11688479 (+)
AMCG00000325 NA coding upstream 186457 11677153 ~ 11679698 (+)
AMCG00000351 ivd,LOC107719458 coding downstream 147234 12034131 ~ 12041923 (+)
AMCG00000339 NA coding downstream 189159 12076056 ~ 12090893 (+)
AMCG00000340 rpusd2 coding downstream 275094 12161991 ~ 12169461 (+)
AMCG00000346 NA coding downstream 315273 12202170 ~ 12208132 (+)
AMCG00000347 NA coding downstream 367531 12254428 ~ 12285830 (+)
G149674 NA non-coding upstream 65415 11800000 ~ 11800740 (+)
G149673 NA non-coding upstream 66277 11799561 ~ 11799878 (+)
G149672 NA non-coding upstream 68148 11797375 ~ 11798007 (+)
G149668 NA non-coding upstream 71299 11793367 ~ 11794856 (+)
G149667 NA non-coding upstream 74059 11791871 ~ 11792096 (+)
G149739 NA non-coding downstream 140330 12027227 ~ 12027443 (+)
G149747 NA non-coding downstream 205490 12092387 ~ 12098372 (+)
G149869 LOC105909576,LOC107704376 non-coding downstream 946642 12833539 ~ 12841673 (+)
G150042 NA non-coding downstream 1525968 13412865 ~ 13413064 (+)
G150066 LOC100846954,LOC107575789 non-coding downstream 1762506 13649403 ~ 13650051 (+)
G149525 LOC100846954,LOC107575789 other upstream 1331018 10534590 ~ 10535137 (+)
G149424 NA other upstream 1895354 9969324 ~ 9970801 (+)
AMCG00000281 cpsf2,LOC106608196 other upstream 2275067 9561557 ~ 9591088 (+)
AMCG00000286 sos2 other upstream 2319744 9514822 ~ 9546411 (+)
AMCG00000285 map4k5 other upstream 2379466 9440061 ~ 9486689 (+)
AMCG00000352 NA other downstream 78658 11965555 ~ 11995026 (+)
G149859 NA other downstream 792773 12679670 ~ 12727903 (+)
AMCG00000381 NA other downstream 1079980 12966877 ~ 13030853 (+)
G150069 NA other downstream 1803942 13690839 ~ 13692589 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 2246241 14133138 ~ 14153840 (+)

Expression


Co-expression Network