AMCG00000384 (mamdc1,mdga2)


Basic Information

Item Value
gene id AMCG00000384
gene name mamdc1,mdga2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13327392 ~ 13338022 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000384
TTGAAGAAGGGTCGGTTTTGGATCACCCCAGACCCGTACCACAACGATGACAACATTCAGATTGGCCGAGAGGTTAAGATCTCGTGCCAGGTGGAGGCCACACCCCCAGAGGAGCTGATGTTCAGCTGGCTGAAGAATGGACGGGCGCTGCGGAGCTCCGAGCGGATGGTGATCACCCAGACTGACCCCGACGTCTCTCCAGGGACCACCAACCTAGACATCATTGACCTCAAGTTCACAGATTTCGGCACATACACCTGCATGGCATCCCTGAAAGGAGGGGGCATCCCAGAGATCAGCATTGATGTTAACATTTCCTCCACCACCGtTCCTCCGAACCTGACAGTCCCCAGAGGAAAGTCACCTTTGGTGGCCCAGGAAGGAGACACAGTGGAGCTTCAGTGCCTTGTTTCAGGGAAACCCAAGCCCATCATCCTGTGGTCCCGGGCGGACAAGGAGGTGCCCATGCCCGACGGCACAATGCTGACGGAGAGCTACGATGGGATCCTGCGCATCGTGAACGTGTCCCGGGAGATGACAGGCTCCTACCGCTGCCAAACCAGTCAGTACAATGGATTTAACGTCAAGCCCCGGGAAGCCATAGTAGAGCTCATTGTGCAG

Function

symbol description
mdga2 Predicted to be involved in regulation of presynapse assembly; regulation of synaptic membrane adhesion; and spinal cord motor neuron differentiation. Predicted to act upstream of or within neuron migration and pattern specification process. Predicted to be located in GABA-ergic synapse. Predicted to be active in glutamatergic synapse.

NR:

description
MAM domain-containing glycosylphosphatidylinositol anchor protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000384 True 621 mRNA 0.57 2 13327392 13338022

Neighbor

gene id symbol gene type direction distance location
AMCG00000367 NA coding upstream 378897 12943056 ~ 12948495 (+)
AMCG00000370 NA coding upstream 385026 12932611 ~ 12942366 (+)
AMCG00000369 nemf,LOC102775640 coding upstream 407261 12898142 ~ 12920131 (+)
AMCG00000368 wdr20,LOC106610634,LOC101173269 coding upstream 443067 12878438 ~ 12884325 (+)
AMCG00000376 dync1h1 coding upstream 502434 12790380 ~ 12824958 (+)
AMCG00000385 NA coding downstream 14310 13352332 ~ 13409859 (+)
AMCG00000386 NA coding downstream 270731 13608753 ~ 13617625 (+)
AMCG00000387 NA coding downstream 280466 13618488 ~ 13626756 (+)
AMCG00000388 NA coding downstream 329867 13667889 ~ 13679929 (+)
AMCG00000395 fkbp3 coding downstream 349945 13687967 ~ 13690398 (+)
G149869 LOC105909576,LOC107704376 non-coding upstream 485719 12833539 ~ 12841673 (+)
G149747 NA non-coding upstream 1229020 12092387 ~ 12098372 (+)
G149739 NA non-coding upstream 1299949 12027227 ~ 12027443 (+)
G149674 NA non-coding upstream 1526652 11800000 ~ 11800740 (+)
G149673 NA non-coding upstream 1527514 11799561 ~ 11799878 (+)
G150042 NA non-coding downstream 74843 13412865 ~ 13413064 (+)
G150066 LOC100846954,LOC107575789 non-coding downstream 311381 13649403 ~ 13650051 (+)
G150106 NA non-coding downstream 401754 13739776 ~ 13746116 (+)
G150303 NA non-coding downstream 1126870 14464892 ~ 14465302 (+)
G150364 NA non-coding downstream 1395210 14733232 ~ 14733440 (+)
AMCG00000381 NA other upstream 296539 12966877 ~ 13030853 (+)
G149859 NA other upstream 599489 12679670 ~ 12727903 (+)
AMCG00000352 NA other upstream 1332366 11965555 ~ 11995026 (+)
G149525 LOC100846954,LOC107575789 other upstream 2792255 10534590 ~ 10535137 (+)
G149424 NA other upstream 3356591 9969324 ~ 9970801 (+)
G150069 NA other downstream 352817 13690839 ~ 13692589 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 795116 14133138 ~ 14153840 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 1593756 14931778 ~ 14944400 (+)
AMCG00000514 NA other downstream 3473431 16811453 ~ 16814365 (+)
G150750 NA other downstream 3597971 16935993 ~ 16938282 (+)

Expression


Co-expression Network