AMCG00000392


Basic Information

Item Value
gene id AMCG00000392
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13882218 ~ 13909932 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000392
GAAAGCATTATGAATTgatatttgtttcattaattctattcaaataaataatatttccaaAAGATACGTGACGGAAAACCTATTTACTTGAATTTAAGACGTTAACGGCACGTACGCCCCCCCCTTTAAAGCGTGGGTAGAAGCCGAAACAAGGAAGAGAAATGAATCAAAACAGACTGGACTGAAAACAAAAGTTGGTGCAACAGAGCCATGTAGTCGAGGTCAGGGTTTGTAACAATGCATGCAACGCAAGCTGTCCGTGCAGTGAGACTAGGTCCCACATTAGCCGCCGCGGCGTCCAGAGCCATGGCGTCGACACCGACCCCGCAGCAGCGAGTGTCCCGGGAGAAGTGGCTGCTGAGCGGCGCTACGGTGGCCGGCGTGGCGGCGCTCTACCTGCCGTGCGTACAGCGCTCCGTCCCCGGCGGCGACTCAGGAGAGCTGATCACTGCTGCCTGTGAGCTGGGGGTGGCTCACCCCCCAGGCTACCCTGTCTTCACCCTTCTGTCCCGCCTGGCTATTGGCCTGCTGCCCCTGTCCTCTCCTGCCCACAGTGTCAACCTGCTGACTGCCCTGCTTGGGGTTGTGGCGAGCGGGGCGCTGTGCTTCACCGTCTGCAGGCTGGGAGGCACAGGGCCTGGTGCCGTGCTGGCCGGGGGGGTGTTCGCAGTGTCCCGACTGCCCTGGCAGTGGTCGATGGCAGCCGAGGTCTTCTCTCTCAACAACCTCTTCGTCGGGCTGCTGTTCTCCCTGGCTGTCTGTTTCCATTGCGCTGATACCCCTGCGCAGCGGAGCAAGtatgGCTGCTGGGGAGCGCTGTGCTGTGGCCTGGGCCTCTGTAACCAGCACACCCTGGTCCTCTTCGTGGTGCTCATCGTGCCCTGGGTCCTCCTCCGCCTTCACGCACACCAGGAACTCTCGCTGCGCACCCTTGTTCTGCTGGGGACCTGTTTCCTGGGAGGCTTCCTGCCCTACGCATACctgcctctctcctccttcctgAACAGGGCGCGCTGGAGCTGGGGGGACCAGACCACCTTGTCTGGATTCCTCACTCACCTGCTGAGGGCTGAATATGGGACGTTCAGCCTGGCCAAGACGGAGAGCTCGGTGGGGCTGGCCCAAATGCTACAGGCCCAGCTGGACCACTGTGTGAGGGacctgtctctccctgtcctgGTTCTGGCCGGGACTGGTCTGGTTCTGGTCTCTGGTGACAGgAGGCGCCGGTCCCTGCCCTGGCTCCTGGCGGCCATGCTGTGCCTGTACTCGCTGTTCTTCGCTTGGAGAGCCAACCTGGACATCAGCAGGCCTCTGTTCCTGGCAGTGGTGGAGCGGTTCTGGATGCAGAGCGACGCGGTGCTGTGTGTGCTGGCCGGGCTTGGCCTAGCGGCGCTGTGCTCGGGATTGGAGTGCAGGTTGGGGGCAGGGGCGCTGTGGAGGGGTTTGGGCTGGGCCTTCACTGCTGTGGTCCTGGCACACCTGGCACACAGCAACTACAGGTTTGCCCACAACGTCCTGAGCACCTTCCCAAACGACTCCATCGTGCTGACGCGGGGGGACCTGCCCGGGAACACGCTGCGCTACCTGCACTACTGCCAGGGGCTGCGGCCTGACCTGCGCCTCGTCGACCAGGAGATGATGACGTATGACTGGTACGTGGCGAGGCTGGGCCGGCACCTCCCCGGGGTGCGATTCCCTGGCCGGTGGTGGGACCCCGTCCTGGCAGAGAGCGGGGACGCCTTCAGCCTGAAGCAGTTCCTCTCCCACAATTCACAGAGGCCTCTGTTTGCCTGCATTGGGCTGCCTGAGGGGGACTCCAGCTGGGAACTGGGCTTCTCTCGCTGGCCGTGGGGTGTGTGTGACCAGCTGGTGCCCAGTAAAACCCCCTTCCCCCCGGTCGAGTGGGCGCAGCGGACCCGAGGGCTGTACAACTGGACCGAGCCGCATGACAGCTTCATTCCTGGGTCCTGGGAAGAGGTGGCCAATGAGGAGATGTGGCAAGCCAGGATGAAGGTGGCCTTCTTCCTGTTTGACCTGGCGGAGCGACAGCATAGTGATGGCGAGGGAAAGGCGCGTCTGTACGAGCTCTCCTACACTCTCTACCGAGAGATCGTAGAAACACACAGGGACCACCCCCCCAACTGGGACAAGAACCTGGGCCTGGCCAGTGAGCGGCTATTGCGTGCCGGGGGCCGGGGCCATAGCCCGGAGAGTCTGCTGACACAGAGCATCACTCACTTCAGCCGGTACCTGCACAGAGAGCCCGGAGACCCTCAGGCCGAAGCCATCAGAGATGCCATTGCATACCTCAAGGCGgagaggaagagacagagagctCCGCCCCACCTGACAGAGAGAAGGGTTGAGGCAGGGGGAGGGATCTAGGGGAAGACAGGTGTGGTCTGAGGTATGGTGCGGCCAACTGAGAGATGTGGGTGGAGCTGAAAGGAAACCAAATGTTgggaaaccaaaataataacGATGATGAGGTCAAGAGGAGGGGCTGTTGAAGAGAAATGGGAGGGACAGTTGGAATTACAGGTGTTCCGATTGGCAGAGAAAAATACATCGACCATAACCACTACTTTACTAAAGAAGAATCGTTCTGTGTTTCAGTCAGATAGGGACACATTGCACATGTTCATTCAGAGTTAGGGTAGCAATGCAGTCTTTTCATACCTCGTAGAAAAATCTGTCCTTGTTTCAatgtaacttatttttaaagCGGAGGAGAAGGATAAAGGGACTGGGTGGTTTTAACTCCTGTTGCAGCGTGGGGGGGCTGAAATCAAACTTtaacaatgtgaaaatgtacaaataataccAAACATCTCTGACTTTCAGttcaacaaaatgttttaaaaatgactgaTGAGCTGTCCAGTCCGGGACTGaataaacattgtatttctTA

Function

GO:

id name namespace
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000392 True 2917 mRNA 0.58 17 13882218 13909932

Neighbor

gene id symbol gene type direction distance location
AMCG00000402 peli2,LOC105026454,LOC106594164 coding upstream 12017 13856638 ~ 13870201 (+)
AMCG00000403 NA coding upstream 45028 13813065 ~ 13837190 (+)
AMCG00000404 msh4 coding upstream 76471 13793258 ~ 13805747 (+)
AMCG00000401 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding upstream 122384 13759307 ~ 13759834 (+)
AMCG00000396 NA coding upstream 122987 13754808 ~ 13759231 (+)
AMCG00000407 NA coding downstream 119250 14029182 ~ 14033883 (+)
AMCG00000406 naa30 coding downstream 127712 14037644 ~ 14046770 (+)
AMCG00000410 actr10,LOC106571574,LOC106608088 coding downstream 186569 14096501 ~ 14103897 (+)
AMCG00000411 NA coding downstream 247104 14157036 ~ 14159090 (+)
AMCG00000422 tmem63c,LOC107732232,LOC106611026 coding downstream 270904 14180836 ~ 14204787 (+)
G150106 NA non-coding upstream 136102 13739776 ~ 13746116 (+)
G150066 LOC100846954,LOC107575789 non-coding upstream 232167 13649403 ~ 13650051 (+)
G150042 NA non-coding upstream 469154 13412865 ~ 13413064 (+)
G149869 LOC105909576,LOC107704376 non-coding upstream 1040545 12833539 ~ 12841673 (+)
G149747 NA non-coding upstream 1783846 12092387 ~ 12098372 (+)
G150303 NA non-coding downstream 554960 14464892 ~ 14465302 (+)
G150364 NA non-coding downstream 823300 14733232 ~ 14733440 (+)
G150455 NA non-coding downstream 1214778 15124710 ~ 15125951 (+)
G150457 NA non-coding downstream 1227774 15137706 ~ 15137923 (+)
G150458 NA non-coding downstream 1244703 15154635 ~ 15155084 (+)
G150069 NA other upstream 189629 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 851365 12966877 ~ 13030853 (+)
G149859 NA other upstream 1154315 12679670 ~ 12727903 (+)
AMCG00000352 NA other upstream 1887192 11965555 ~ 11995026 (+)
G149525 LOC100846954,LOC107575789 other upstream 3347081 10534590 ~ 10535137 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 223206 14133138 ~ 14153840 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 1021846 14931778 ~ 14944400 (+)
AMCG00000514 NA other downstream 2901521 16811453 ~ 16814365 (+)
G150750 NA other downstream 3026061 16935993 ~ 16938282 (+)
G150811 NA other downstream 3635522 17545454 ~ 17548508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011674 tmem260 coding NC_007128.7 CM002901.2 44115441 ~ 44194885 (+)