AMCG00000402 (peli2,LOC105026454,LOC106594164)


Basic Information

Item Value
gene id AMCG00000402
gene name peli2,LOC105026454,LOC106594164
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13856638 ~ 13870201 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000402
ATGAGTGTCTTCTCTTTGTCCGAGTGTGCGATCGCATGGGCCTGGTTTGTCCCACCGGGTCCCTACTCTGCCAGCCGGCTCAGCGATGCGGGTGACAGGTGGTGCAGTAGGGTGGGCAGCATGGTTGTTAagttcctcttctctctctctttctctggcaGGTACAATGGCTCCCTCCCAAATGGAGACCGGGGCCGCAGGAAGAGCCGGTTTGCTTTGTACAGGAGAGCCAAGGCCAACGGGGTTAAGCCCAGCACTGTGCACGTGCTCAACACGCCACAGGCTAGCAAGGCGGTGAACTGCAGGGGGCAGCACAGTATCTCATACACGCTGTCCCGGAACCAGACCGTGGTGGTGGAGTATTGCCATGACAAGGACACGGACATGTTTCAGATTGGCCGCTCCACTGAGAGCCCCATTGACTTCGTGGTCACGGACACCGTGTCGGGGGGCCAGGCGGGTGAGGACGCGCCCATCACTCAGAGCACCATCTCTCGCTTCGCCTGCCGGGTGGTCTGCGAGCGCAGCCCCCCTTACACGGCCAGGATCTTCGCTGCCGGCTTCGACTCCTCCAAGAACATCTTCCTGGGGGAGAAGGCCGCAAAGTGGAAGAACCCTGACGGTCACATGGACGGGCTGACCACCAATGGTGTGCTGGTGATGCACCCACGGGGGGGCTTCACAGAAGACTCCAAGCCCGGTGTGTGGAGGGAGATCTCCGTCTGTGGGGACGTCTACACCCTGAGAGAGACCCGCTCCGCACAGACCCGAGGGAAACTGGTGGAGACTGAGAGCAACGTGCTGCAGGATGGCTCTCTGGTGGACCTGTGCGGCGCCACTCTGCTGTGGCGCACGGCGGACGGGCTGTTTCACACGCCCACGCAGAAGCACATCGAGGCACTACGGCAGGAGATCAACGCGGCACGGCCCCAGTGCCCCGTGGGGCTCAACACCCTGGCCTTTCCCAGCATGCAGCGCAGCCGTGACCTGGGCTCGCTGGAGGACAAGCAGCCCTGGGTCTACCTCACCTGCGGTCATGTGCACGGGTACCACAACTGGGGCCACCGCTCGGAGCACGAGCCCAACGCCCAGCGCGAGTGCCCCATGTGCCGCACGGTGGGGCCCTACGTGCCCCTGTGGCTGGGCTGCGAACCCGCCTTCTACGTGGACACCGGAGCCCCCACCCATGCCTTCGTGCCCTGCGGACACGTTTGCTCCGAGAAGTCGGCCAAGTACTGGTCTGAGATCCCCCTGCCCCACGGCACGCACGCCTTCCACGCCGCCTGCCCCTTCTGCGCCACGCAGCTCACCCCCTCCCAGGGCTGCGCCAAACTCATCTTCCAGGGACCCATTGACTGAGTTGACTCCTGGGGATCAGCCAGGGAGGGGGAGACGACgttttctcctgctcttcttttttgttttccttttttctgtttgttttttaattggcgGAGGGAGGGGTGTGTCGGCGTGGCCGCAGTTGATAAGGTGCTACTGAAATGCTCACCCTAGCAGGTCTGCTGGATGGCCGCATCTGCTGCCGAGAGCCGGGCGGACTCGGTCCAGACTGGCACTCGGGGGTGGTGAGGTTGTGGGAGCTCGGGCAGGTGGGCCGGGGCGAGCCTTTGGGTTTCTGCTCGGAGACTCCCTTGTCTACACTGTCATTTCCCTGCTGCCTCTTGTGTCCCATCAGCACCATATTTCACACTATTCTCTCACAGACCAGTCCAGGCATTTCACAAACCCGGTGGCACAGAAACCCCACTGAGCTGCTGAAGTAGCCGGGCTGAACTAGCTCCGAGGGACTGAATGACCGGAATGGACTCATCAGGCTTTCTGTAGCAATCCAGCCCTCGTTCACTCACTAAAGCCGGTCACTCAGATGGTGGAAGATGGCCACTCGTTTCCTCACTGTGCTGTGAGGGACCCCGGAGTGGGCTGGCATTGGCTGGCCGTGTCACAGAGTCGCAACGCTCGATTCCCGGGCCAGTCAGCTGGTCTGCTGGCTGGAGAGGAAAGgacagagaggaaggggaggcTGGGTCACTCGTCCACAACTCCTCACTCACCGTCATCCCCTGGGGGCCTCCCAACTCCCCCATCTCCTGCAACGGCCCTGCGGAGGGAGCGTGTGAAGCGGTGGAAGACGCTACGCCCTCTGAAACTCACTGCTGGAGATGCCAGTGAGCACGTGCGTGTGTGAGGGCGACCGAGGACCAGCGTAACTCCAGCCACTGCGACTAGGAAcgtcaaacaaataaatatgaatcatCTTCCATATAATACAGATATGGATTGCAATACTCAGGGGCCTGTACTGCCCCAGAGGGTAACATTTATACCAGATGAAATTGAGCTATTTTAATGAGGGGAGTTTATACGAAGAGAGagttgaacattttgttttcaagatgCATCAATAAAACTCATACGATCTGTCTTTCATATTCTTTCTAATGAGTATTTTACTACACTGAGGCCCTTGTacagttttataatttaaatgaggatgttaatatattttatcttgtatactcgtgtgtgtgtgtgtatgtgtgtatgtgtgtgtatgttggggGGGTAAACACTCTTCACGAGTCCGGTCCTCTGGATTTTTCGGTTTTCGTTCATTGTTCGTACCCTTAGACATCCACACTGATGTTTTGAGCACTATTTTCTCTCGCTCTACAGCTCGAGCGTTTTCGTTTCAAGTCGGTTTCCCCGTGGAGAGTCAAGACACCCTGACACACCGTTCGTGGATTTTAAGTATGAACCCGCACACACttcacacacgcacgcacagacTCTCGCACGCCTCTGACCCCTGCCGCTGGCGCTGGCGTTTCTGGGCCTCGattttacatgcagtgttttaaagCTTTCAACACCCCTGATATCTCGCGAGGGACAGAGTCAGACCTGCTGCAAGGGCTCGTGGGATATTTTGATTCTATCCCCGTGCTCCGGGAATTAAGACCACCCAGAGTCGCTCGGTTGGGCTGTTTTATGAGTTTCACCAGGGTCTGCTCAAATAGGTTGGTAGTTCTCCCggttttgctttttgttgttttaaacaatcTTGAGCTGGGCCAGATATACATGAGCAAGTGATGTGTGTTGGAGAGAAGACTGCAGTCCTGCATCTCGTATATGAACACTAACCCCTCCTGTGAGCAGCTCTTTGAATTGGTGGGCTCTCGCTGTAGTTTCCCCCTGTTTTACAGTAGTGACAGGTGCGATgtttgcaatattaaaaaaaggctaAAGCTATTCGATTAGGTAGCCgcatatattaattttatttctagaCTCTGTGGTCTTAATTACAGCAAAGAAGTAACTATTATTAAGACTTGGCAATGTGATCTTTACTCTGTTTATCCATACCACTTAAAATACGTGATTTGCTTGAATTAGCCGTATTCCAGTTGGTAAGTTCGCGTGGGAAGCAGTTTGTGACCGGGAAATAGGGAAGAGGAAAAGTGTAGCCTGTTTTTTCACCTTCGTGCCGCCATTCAAAGGATAATCACTGGAATTTGCGTCCTGTGTGGAAGGGAAGTGATATACGCAGACCCTGGGAGATGTTAttcattgaagaaaaataagaaaactcaaaattgCAGTTATTCTGTCCTCGGGAGCTTTGACTCTGTCCTCCTGGGATTTGGTTGATAGTGAAGTGTGTACTGAAAATGTGCAAATCAAAGGATTTCCTTCTTAACTGGCACTGTGAGGCGAGGTGGGCAAGAGATTCAGACCTGAAAGTTTGCCATTTAACGGCAAAACATTGCAGGGATCAAGATTAAAGAGAGGGGTATGAAATCTTAACCGCTTGGAGAACATAGATGATGGTTTAAATCCATAATGGCCATGTGCTGTGCTGGAGAGAGTTTGATTTCTAGTTACTACATGGTGAAGCTAATCGGAATGGTTGCACTGGTTAAAGTGGTCTTTTATAGGACTTCTCTTTTCTGGGCTGCTTCTGGGGTCTGCCACCTCCATCATGGTACGAGGGACCCCAGTACGATGCCCACTGAAGCAACTATAATCGAACATCTGACCTCTATGAGTTGAATTGAGTGGAGATGGCCGGCCTACGTGTGACTCGGAGCGGAGCTGGGCCGTCTCTGTCGGTCTTCCACTCGCACTGCTTCACTGTTTTACTCTAACATTCCTCACTGGGACACAACCAGCCCTGGGGGGGGACGGtggggctgctgctgttgaTGTTTTGTTCTTAACCTTTGTACGATCGGCGGGTGCCTGGACACCCCAAGAG

Function

symbol description
peli2 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in Toll signaling pathway and protein polyubiquitination. Predicted to act upstream of or within regulation of Toll signaling pathway. Orthologous to human PELI2 (pellino E3 ubiquitin protein ligase family member 2).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase pellino homolog 2 isoform X1

GO: NA

KEGG:

id description
K11964 PELI; pellino

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000402 True 4282 mRNA 0.54 6 13856638 13870201

Neighbor

gene id symbol gene type direction distance location
AMCG00000403 NA coding upstream 19448 13813065 ~ 13837190 (+)
AMCG00000404 msh4 coding upstream 50891 13793258 ~ 13805747 (+)
AMCG00000401 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding upstream 96804 13759307 ~ 13759834 (+)
AMCG00000396 NA coding upstream 97407 13754808 ~ 13759231 (+)
AMCG00000394 klhl28,LOC106581578,LOC106610877 coding upstream 117016 13731513 ~ 13739622 (+)
AMCG00000392 NA coding downstream 12017 13882218 ~ 13909932 (+)
AMCG00000407 NA coding downstream 158981 14029182 ~ 14033883 (+)
AMCG00000406 naa30 coding downstream 167443 14037644 ~ 14046770 (+)
AMCG00000410 actr10,LOC106571574,LOC106608088 coding downstream 226300 14096501 ~ 14103897 (+)
AMCG00000411 NA coding downstream 286835 14157036 ~ 14159090 (+)
G150106 NA non-coding upstream 110522 13739776 ~ 13746116 (+)
G150066 LOC100846954,LOC107575789 non-coding upstream 206587 13649403 ~ 13650051 (+)
G150042 NA non-coding upstream 443574 13412865 ~ 13413064 (+)
G149869 LOC105909576,LOC107704376 non-coding upstream 1014965 12833539 ~ 12841673 (+)
G149747 NA non-coding upstream 1758266 12092387 ~ 12098372 (+)
G150303 NA non-coding downstream 594691 14464892 ~ 14465302 (+)
G150364 NA non-coding downstream 863031 14733232 ~ 14733440 (+)
G150455 NA non-coding downstream 1254509 15124710 ~ 15125951 (+)
G150457 NA non-coding downstream 1267505 15137706 ~ 15137923 (+)
G150458 NA non-coding downstream 1284434 15154635 ~ 15155084 (+)
G150069 NA other upstream 164049 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 825785 12966877 ~ 13030853 (+)
G149859 NA other upstream 1128735 12679670 ~ 12727903 (+)
AMCG00000352 NA other upstream 1861612 11965555 ~ 11995026 (+)
G149525 LOC100846954,LOC107575789 other upstream 3321501 10534590 ~ 10535137 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 262937 14133138 ~ 14153840 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 1061577 14931778 ~ 14944400 (+)
AMCG00000514 NA other downstream 2941252 16811453 ~ 16814365 (+)
G150750 NA other downstream 3065792 16935993 ~ 16938282 (+)
G150811 NA other downstream 3675253 17545454 ~ 17548508 (+)

Expression


Co-expression Network