AMCG00000403


Basic Information

Item Value
gene id AMCG00000403
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13813065 ~ 13837190 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000403
ATGAgctgtaaaatgttattgttcaGAGCTAGGCGGGAGGCCTCTATACACTCCATCACTGTCCTGCACATGCGACACCATCTCCTCATTCCTCTGGAGCTGCGTGTTGCCAGGCGTGTGGTGTCCGTGTCCCGTGTCAGTGGTCTGAGCAAAATCCTGAAGCACACTGCCCTCTATTTAGAGGCAGTGGTGCCCTCTGAcatggcCATGGAGCTGTATGACTCGCAGTACCTGCTCATCCTCGCCCCCTCGCTGGTCATCGCCCTCATGTTCCTGTTCTTCTGGCTCTTCATGAAGGAGACCTCCTATGACGAAGTGCTGGCGCGACAGAAGCGGGACCACAAGCCCCCGCCTGTGCGCCCGGACATCCGCAAGAAGAACGACAAGAAGAAGAGCAAGAAGAAGGAGGGAGGCAGCGGGGGGggaggcggcggcggcgggggTGGCGGGGAGTCTGACTCGGAGCAGCGGGAGTTCGAACTCGCCGACGCGGTGAGCCCTTCCCACGAGGATGAGGAGCCCCTGCCGCCCCTCTCCGGCGAGCTGCCCTCTGGCCTGCGCGAGAGGAAGAAGCGGGACCGGAAACAGCAGGCGACAGCACCTCGGAGTGCGGGGGGTGACGAAGGCAGTGCCCCCCGTGAGCTCAACGGGTCAAAACCCTCCACCCGCAAGAACGAGCCGTCCCTCCCCGTCACCAAGCAGCCCAGCCCTCCCCCTGCAGACACCATGGGAAAGAAGAAAGCTTcacagaagaaacagaaaaatgagGCCGATGACTTCCACTTGGAGAGCAAGCCCGACCCGGCCCCAGTGCCCGGCAGGAAGGAGGCGGCACCGCCATCTCTGGAAACCAAGCTGCAGGATGGGGCCCCGGTGAAGAAGAAGAACGCTCCCAAGAAACAGAAAGCTGAGCCAGTGGCCCTGATCGAAGAGGCTCTGATCCAGGCCACGGTGTACATCCCGCTCATGGACAATGACCCTGTTGCCCCCGCTGCCCCACCAAAAGGCCCAAGCGAGGACACGCCTGCGAAGACTAACGCCAAGAAGATGAAGAACGAGACGGACAAAGAAAACACAGAGATGAAGCTGAAGGAGCTGCTGTGTGGGCTGCGAGGCCTGGCCCTGTCCGCGGAGGAGGCAGTGAGTGTGGCTGTTGTGCTGAGGGACAAGTGCCCCGCTGCCCTGGATGCCTGGCACAAGTCGGTGGTGAAGTCTGAGCCGTCGGCCCAGCAGCTCCTTGAGAGAGAGCGGCTTCTGTCTACTCTGCAGGAAGAGGCCTCCATTGCCAAGGAGCAGGTCAAGCAACTCAGCCAGGAGCTGATGGTGGAGAAGCAGAAGACCGCCCGTGTCGACTCTATGTTGCGTGAACAGCGGGGTGCCCTGGAGAAGGACCGAAGTGTCCTGCAGGCCAAAGCACAAGGAAGCATGCAGGAGACGCAGGCCATCCAGATAAAGTTCCAGCAGTTGAGGGATCAGCTCGAGGGACAGGTTGCGCGGCTGCAGCAGGAGAACAGCATCCTGAGGGACGCAGTCAGCACCGCCACCAACCAGATGGAGACCAAGCAATCATCGGAGCTAAACAAGCTCAGGTTGGACTATGGGCAGCTGATGAAGGAGCTGGGAGACAAGAACGCCAAGTTACAGCAGGAGGAGCTGCAGAGGAAGGGCCTGGAGGTCACCTATAACCAGAACGTCAGCCAGCTGGAGTCCCAGCTCAAGGAAGCCGAGCGGCGCTGGGAGGAGGTCGAGGGATACGTGCACAGCGTCAACACGGAGCATGAGAACCTGAAGGCCTCCAAGAAAGatctgcagaacaAGCTGCTGGCCGTGGAGTCCGAGCTGAACAGCAAGAACAAGGAGATCCAAACTCTTCACAGCAGCCTGACTGACACCATGTTCTCCAAGGACCAGGTGGAGCAGAAGATGATGCAGCTGCTGGAGGCATCGCAGCACAGCCGGCCGGACGACTCACTGCAGGACCTTCTGCAGGAGAACAAGAATCTGAATGTCCAGATAGAGTCGCTGCAGGCTCAGGTCGCCTCTCAGGCTACAGTTGCGTCACGGATGGATGAGCTGCAGAAAATGCTGGCAGAAAAAGAGGTCCAGAAGCTGGCCCTGGAGGACTCCCTGAAAATGGAGCGCAGCAGTGGGGCAAACCGAGAGACTGACATGCAGGCGATGCACAATGAGAATGTGGCACTGAAGACTGAAGTTCAGAAACTGCAGGCTCAGATGTCTGAACAGGCGGCCACACAGCATATGCTGGAGCAGTTGCAGAAGAGTGCtcaggagaaggaggagaagataAAGACAGTGGAGATGCTGTTGGAGGCAGGGCTGATCGAGGTGGCCAATAAAGAGGATAAGCTGAAGATGTTGAGGAATGAGAATGAATCATTAAAAGGGGAAATGCAAGCTCTGCAACAGCAAAACACTGAGCAGACCACCTCTGAGTTGAGGGTGGAAGATCTACAGAAAGTGATCGAGGAGAGAGACGAGAGGATGAAGGCTTTGGTGGAGCAGCTGCAGAAGGAGATGGTGAACGTGTCTGAAAAGCAGAAGACCATTGAGACCCTTGTGCAGCAGGTTGAGGCCCTGAAGGCAGAGAGGGAGCTGGTCATTTGTCGTGAAGCTGAACAGGCCTCCATCAAGACACAGCTACAGGAGTTGCAGAAACTGCTGTCGGTGAAAGAGGAGGAGATGCAGACACTCCAGAGGGCTGTGCAGGAGAGGGCCACGGAGGCGGCGGAGAGGGAGCTGCAGCTACagGCCCTGCGCGAGGAGAGCTCAGTGCTCAGGGGTCAGATGGAGGAGCAGCAGGTCCAGACAAGTGCCCCCAGTCAGGAGCTCTTGACAGCGCTGGCTGAGAAGGATAGGCATCTGGCGGAGGTTCAGAGTGAACTGGCAGAGCTGCGGGAGTCCCTGGAGCTGCACAGGAAGAAGAACAATGAGCTTCGTGAGAAAAACTGGAGCGCAATGGAGGCTCTGTCAGCCACGGAGTCCGTGCTGCAGGGGAAACTCGGCAAGATCACCAAGGAGAGTCAGAAGACCTTGGCCGCAGTTGAAGCTCAGAGTCGAGATGTGCTGCACAGACTCTTTCCCAGCGTGCCCCTGCCGCACAAACAGAACCACCAAGAGTGGCTGCAGGAGTTTGAAAGTGCTGCCAAGGAGGTGGTGATGGGCACAGAGCACAAAGACACTAAGGGTTTGGAGGAGAAGCTGAGGGAGTCAGAGGAGGTACAGAAGATCCTACAGAAGGACTGCGAGACGTACAAGAAAGTGCTGGCGGAGACGGAGGGCATCCTGCAGCGGCTGCAGAACAGCGTGGAGCAGGAAGAGTCGCGCTGGAAAGTGAAGCTGGAGGCATCGCAGAACGAGCTGAAACCGATGTGCGCGAAAGTGGCGGACCTGGAGAGGGAAGTGGACCGGCTGGGTGCAGAGAGCGGGGAGGTGGAGAACTTGCGGCAGGAGAGGCAGCACCTGGAGGCAGAGCTAGAGCGTGCAGAGCGGGAGAGCGCCACCTACGTGACGGAGGTCAGAGAGCTGAAAGACCTGTTGACTGAATTGCAGAGCAAACTTGATGGCTCGTATACAGAGGCAGTCAGGCAGAATGAAGAGCTGAACGTGTTGAAGACCCAGCTGAACATGACTCTGTCCAAACTGGAGACggaggagagcgagagacagaagGTGGCGGGGGATCTCTACAAGGCTCAGCAGTCCCTGGACCTGATCCAGGCCGAGATCCTTAAAGAGTCGGGGCAGATGGACCTGATTGAGAACAGCACCATCGCCACACAGACGGAGGAGATGGACAGAAAGGAGAAGATGGCGGCAGGGCTGAACCAGACTGTGAAGGAACTACAGCAGCTCCTGAGGGCGGTCAACCGGCAGCTCACCAAGGGCCAAGAGGGGgGTGAGGACAAGTACCCAGCAGAGGTATAGAGGCTCATGGGAGGACCTGCCTGAAACCCAGCCTTACTGCAGCCACCCCCAACCCTGTCCTGTCCTGATCTAGTCAGAAACACTGAACCGACCGGCTCACTCCCCGCCTGCCCGTGTGGACCTGCTGACACACCCGCCTGTAGGCAGCCTCTGAGATTAGACTTCTAGAGACCCTCTCTTCGCTGGGTAGGGGTGGGAGGAAGGGAGTGGGGGGTAGGGATTTACAGATTTCAACCGTgtcaaaaaaatctaaacaaaaatggaataaatatatatatacatagaaatCAAACTAAAATGCAAATCTACATTCCTGAAGACtatgtggtgggggggggtgaggTGTAATGCAACAGATGACAAACTaagtttaattttttcatttcctgttcAGATCCAGTTTTAATATGATTCAGAGTTCTTTGCTAGCCGATACAGCTGGGAGACGAGCAGCTCCCGTCTTTCGATCTATGAGTTTTTAGAatcctttttttaaaggagaaaataatgattaataataataacaatgataaggACCTATTGACTCTTATTCACTACAAGTTACATCCTTGTGCCTGGGCTGAGGCGGGTGCACGCTGCATCTTCTGGGCCTCGCCTGGTTTTTGGCGGCGCCAGTCGGGTTGTCTGAATCGGGTCTCTCTGGACCTGGAGCACTGAGGGACACACTGCGCTGGAGCAGCAGGCCAGCCACGCACAGCATAGcggttttattatattttattaccgGGAAGAGAGGCCGCCTGTCCTTCATCTTTAGTCGACACACTCCCTATATTGTGGCTAATTTCATTAATActgaacttttattttattttgtaaaaggtGACCgttaaacaattaaaagggATGCTTG

Function

GO: NA

KEGG:

id description
K17975 KTN1; kinectin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000403 True 4819 mRNA 0.56 39 13813065 13837190

Neighbor

gene id symbol gene type direction distance location
AMCG00000404 msh4 coding upstream 7318 13793258 ~ 13805747 (+)
AMCG00000401 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding upstream 53231 13759307 ~ 13759834 (+)
AMCG00000396 NA coding upstream 53834 13754808 ~ 13759231 (+)
AMCG00000394 klhl28,LOC106581578,LOC106610877 coding upstream 73443 13731513 ~ 13739622 (+)
AMCG00000395 fkbp3 coding upstream 122667 13687967 ~ 13690398 (+)
AMCG00000402 peli2,LOC105026454,LOC106594164 coding downstream 19448 13856638 ~ 13870201 (+)
AMCG00000392 NA coding downstream 45028 13882218 ~ 13909932 (+)
AMCG00000407 NA coding downstream 191992 14029182 ~ 14033883 (+)
AMCG00000406 naa30 coding downstream 200454 14037644 ~ 14046770 (+)
AMCG00000410 actr10,LOC106571574,LOC106608088 coding downstream 259311 14096501 ~ 14103897 (+)
G150106 NA non-coding upstream 66949 13739776 ~ 13746116 (+)
G150066 LOC100846954,LOC107575789 non-coding upstream 163014 13649403 ~ 13650051 (+)
G150042 NA non-coding upstream 400001 13412865 ~ 13413064 (+)
G149869 LOC105909576,LOC107704376 non-coding upstream 971392 12833539 ~ 12841673 (+)
G149747 NA non-coding upstream 1714693 12092387 ~ 12098372 (+)
G150303 NA non-coding downstream 627702 14464892 ~ 14465302 (+)
G150364 NA non-coding downstream 896042 14733232 ~ 14733440 (+)
G150455 NA non-coding downstream 1287520 15124710 ~ 15125951 (+)
G150457 NA non-coding downstream 1300516 15137706 ~ 15137923 (+)
G150458 NA non-coding downstream 1317445 15154635 ~ 15155084 (+)
G150069 NA other upstream 120476 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 782212 12966877 ~ 13030853 (+)
G149859 NA other upstream 1085162 12679670 ~ 12727903 (+)
AMCG00000352 NA other upstream 1818039 11965555 ~ 11995026 (+)
G149525 LOC100846954,LOC107575789 other upstream 3277928 10534590 ~ 10535137 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 295948 14133138 ~ 14153840 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 1094588 14931778 ~ 14944400 (+)
AMCG00000514 NA other downstream 2974263 16811453 ~ 16814365 (+)
G150750 NA other downstream 3098803 16935993 ~ 16938282 (+)
G150811 NA other downstream 3708264 17545454 ~ 17548508 (+)

Expression


Co-expression Network