AMCG00000407


Basic Information

Item Value
gene id AMCG00000407
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14029182 ~ 14033883 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000407
GCGAAAACAGGaagtgtttctgtattttgatCATTATTACTGAAGCCCAAGGACGGAATGTGCCTGTTTTGATGCTGCTTTTTTAAAACgatgatatttttatttacgTAAACGATTCGCGTCGAAGATTAAAACATATGtttgctgtagttttttttaagtgatttgaAATGATTACGTTTTACGCTTCTGTGAATGTTTAGTTTAGCTACAAATGTCGTATACTTATTTTTCATGGCGAAACTCTGTTCTTACTGTAATTGGAGTGCAATGGAAAACCGTCATATCTGATTGCAGTGATGTGCAATCTGTCTATTATAGCGAATGATATAATTCCCAATTCGGATTATACATCTGTCAGTCTGCCCACTAGTTGTGATTCAGGTTTAGCACTGAGATGGGTAACATGATGGTGCGAAGTTGTGTACATTGAATAAATCGTGTGGAAAGTGGGAGAAAATCAGAGTAACTCAGCTTCCCACACGGAGATAGTGATAGAGACAGCGGAGATGAGTATCCGAGCCCTGTGGGTCATCAGCCATGAGAAGGGCGAGTGTGGGACAGTGAGCTTCTCAAGGCGGTACCCGACGGTGGAGCGCCGTGCACGGGGGCTGGCAGGGAGGCGGTATGTGCCCATTCCTGAGGACAGCGATCTGCTGCGCCCACTTCTGACGGAGCTGGGAGTGACGGACCCAGAAAAGCCCTTTGTAACATCCCGGGATGACTGTGCCCGCCCCCAGCGCTCTCCAGCTCTGGAGGTGCACCTGGAGGGCCAGGATGGGGGAACTCTCTGGCCTCTGTTGGCCATCACTCAGGGGGAGCTGATCCTGGCTTGTCTGCCACTAGTAGAGGTCCCCCTGGAGCCTCAGCCCCCACTACCCAGCCTGCCCTCTGTGTCCCAGGGACTCTCCCTGCTGGCAGGGCTACAGACCTTCATATGTGGGGCTGGGGGAAGGGTGGAAGGGGATCTCCTGGCCTCACGTTTGGCCCTCCTACCAGCTGTGCTGCTGCAGACCTGCCCCCTCGGCACCCCCCTGGATACCCTCCAACTGGGGCTGCCGCCAGCCCCTTCCCCTGCTCCTGCAGGACCCCAAAAGCAACCCGCCTGGAAGCCAGGGGTGCACCGCGGGCGGGCAGTGGTCAATGTGGCCCTCAGTGAGCAGGTGCGCTCCATGCAGTATGGCAGCCGCACGAAGCAGGACCTCTGGGATGTCTTTGGTACGGTCACCTGCAAGTGTGAGTTGGAGGGGGTCTTGCCCAATGTGACTGTGACCCTCTGTCTGCCGCCCAACGGCTCCCCACTGCAGGACGTGCTGGTTCACCCCTGTGTGACCTCCCTGGACTCCAGTGTCCTGACTGCCAACAGCATAGACGACAGTGATGGCTCATCCTTCTCCGGTCCGTACAAGTTCCCCTTCTCCCCCCCTTTGGAGCCTTTCCGCCTCTGCAGTTACACGTCACAGGTACCTGTGCCTCCCATACTGGGGTCCTATCagctgaaggaggaggagagccagTTAAAACTGACCGTCAGCCTGAAGCTGCATGAGAGCGTCAGGAACAGCTTTGAGTACTGCGAGGCACACCTGCCCTTCTTCAACAGGGGACCGCTGAACATTGTGGACGTGCGGGTGAGTGCGGGACAGCTGGAGGTCTCCCGAGAGAAGAGCCTTTTGGTCTGGGTGCTGGGTCAGAAGTTCCCCAAGTCTTTGGAGGCTACACTAGGGGGCACTGTGGCTTTCTCTGGGCAATCCCCAGGGCCAGTTGACCCTCTTTGCACAGGGCTGACTGCCTACATCAAGCTGTACTTCCGAGTCCCTGACCTAACTCTGTCTGGATGCTCTGTGGACCAACACTCGGTGCAAGTGTACTCCTCCGCCAAGCCACGCATCACCACCTCCCGTGAGCTTTTGTCCTCCGAGTATTTCATCTGGAACTCCACAGGGGATGCTCCCGTTTCTTCTGGACTTATGATGCTGTAACGCAGAAGTGGGTAAGCACAGGAAAGGCCGGGGCGGGGACGAGAGAGCGCCGCCCTGGAGGGGCGACCTTGGAGGGAAAAGGGGAGCCGAATCTCCTCACGGGTTGGCTGTAGACATCTCCGTCTCTGTATGTGCTGGCAACCTCCTACAGTGGGCCGATTCGCCGATTCTGAGCAGACTCCGTGTGGCCATCACAGGGCCTGGACCTGAGGCACGCTTGAATACACAGTGGGGAGACAAAAACTTCCTCAAGAAGACCAGCCTTCCCAGGGACTGGTTGGGCATTTTTTCAGTTACAGGGTTTCAATTGATCCGGTTATCTCTAATACAGCTCGATTGAAACGGTGAAATgttctggtgtgtgtgtcttggtTTCCTGCTTCACCCTGACTGTTACATGTTGATGACTCTGAAACATAAACACTGTGCTCTTCACAGCACTGCCGATGGTTTACACCTGGACTGTCACTGGCTTACTCTACAAGAAGGATAGTCTTACCATTATCCCAAAGACTGATCTCAGGGAGCCAGGAAAGAAAGTGTTTGCACTATAGTATTACTCCAATCTGTCCAGGATATGAGGCATGGGTTGAAATTGTGAAATTCAGTTCAATACGGTATGCTGCCATTAAAAAAACTCacaataaacttaaaatacaattttttatttttctgttggaaCACTTGTCTGTTTTCATGTCCTTGACTAAGAGAGATTGAGAACAGATCTTATTCACCCAAGCCTTTAGCCTCTATATTtctcattaaatattgaaaatgtttttaccCACGTaagaagtataaaaaaaaatgtcaaaaccttttctctctttcttttttcctcctttcGTTCTTTCTGAGAATTCCTTTTAGCCGCTGACATGGCAATAAAG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K19023 AP5M1, MUDENG; AP-5 complex subunit mu-1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000407 True 2875 mRNA 0.52 8 14029182 14033883

Neighbor

gene id symbol gene type direction distance location
AMCG00000392 NA coding upstream 119250 13882218 ~ 13909932 (+)
AMCG00000402 peli2,LOC105026454,LOC106594164 coding upstream 158981 13856638 ~ 13870201 (+)
AMCG00000403 NA coding upstream 191992 13813065 ~ 13837190 (+)
AMCG00000404 msh4 coding upstream 223435 13793258 ~ 13805747 (+)
AMCG00000401 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding upstream 269348 13759307 ~ 13759834 (+)
AMCG00000406 naa30 coding downstream 3761 14037644 ~ 14046770 (+)
AMCG00000410 actr10,LOC106571574,LOC106608088 coding downstream 62618 14096501 ~ 14103897 (+)
AMCG00000411 NA coding downstream 123153 14157036 ~ 14159090 (+)
AMCG00000422 tmem63c,LOC107732232,LOC106611026 coding downstream 146953 14180836 ~ 14204787 (+)
AMCG00000424 NA coding downstream 190281 14224164 ~ 14228809 (+)
G150106 NA non-coding upstream 283066 13739776 ~ 13746116 (+)
G150066 LOC100846954,LOC107575789 non-coding upstream 379131 13649403 ~ 13650051 (+)
G150042 NA non-coding upstream 616118 13412865 ~ 13413064 (+)
G149869 LOC105909576,LOC107704376 non-coding upstream 1187509 12833539 ~ 12841673 (+)
G149747 NA non-coding upstream 1930810 12092387 ~ 12098372 (+)
G150303 NA non-coding downstream 431009 14464892 ~ 14465302 (+)
G150364 NA non-coding downstream 699349 14733232 ~ 14733440 (+)
G150455 NA non-coding downstream 1090827 15124710 ~ 15125951 (+)
G150457 NA non-coding downstream 1103823 15137706 ~ 15137923 (+)
G150458 NA non-coding downstream 1120752 15154635 ~ 15155084 (+)
G150069 NA other upstream 336593 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 998329 12966877 ~ 13030853 (+)
G149859 NA other upstream 1301279 12679670 ~ 12727903 (+)
AMCG00000352 NA other upstream 2034156 11965555 ~ 11995026 (+)
G149525 LOC100846954,LOC107575789 other upstream 3494045 10534590 ~ 10535137 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 99255 14133138 ~ 14153840 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 897895 14931778 ~ 14944400 (+)
AMCG00000514 NA other downstream 2777570 16811453 ~ 16814365 (+)
G150750 NA other downstream 2902110 16935993 ~ 16938282 (+)
G150811 NA other downstream 3511571 17545454 ~ 17548508 (+)

Expression


Co-expression Network