AMCG00000410 (actr10,LOC106571574,LOC106608088)


Basic Information

Item Value
gene id AMCG00000410
gene name actr10,LOC106571574,LOC106608088
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14096501 ~ 14103897 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000410
TTTTGATTCAGGCGAATTATTTAGTGGCCCGAAATCTGCcattgctgtgctgtgtttgaaGAAGCCCCTCCGCCCTACCCAGCTGTGTAGCAGCGCAGTATAAACATCTAGCTTTAGATTAGTGATTTCTGATATATTGTCCTTTgtgaaataaaccaaaatgCCGCTGTTTGAGGGCCTGGGGAGCGGCGGAGAGAAGACAGCTGTCGTCGTTGATTTAGGAGCAGCCTACACGAAGTGTGGCTTTGCTGGTGAAACTGGGCCGAGATGCATCATTCCAAGTGAGATCCAACGACCGGGTCTTCCACAGCCAATCAAGGTGGTTCAGTACAACATCAACACGGAGGAGCTCTACTCCAACCTTAAGGAATTCATTCACATGCTGTATTTCAGGCATCTGCTTGTGAATCCCCGGGATCGGCGTGTTGTGATCATCGAGTCGATTCTCTGCCCCTCGCACTTCAGAGAGACTCTTTCTAGAGTCTTCTTCAAACACTTTGAGGTGCCGTCGGTGCTCTTCGCTCCGAGCCACCTCATGTCTCTGTTGACCTTGGGCATCAACTCGGCCCTGGTGATGGACTGCGGCTACACGGAGACGCTAGTGCTGCCTGTGTATGAGGGCATCCCCATCCTGTCATCCTGGGAGGCCCTGCCGCTGGGAGGGAAGGCCATTCACAAGGAGCTGGAGAGCTTGCTGGTGGAGCAGTGCACTGTGGACACCGACTCCAGCACAGGCCAGAGCTTGCCAGCGGTCATGGGTTCCATTCCAGAAGAAATCACAGAAGATATTAAAGTGCGGACCTGTTTCGTTAGTGACCTGCAGAGAGGGCTGAAGATCCAGGAGGCCAAGTTCAACCTGGATGGCACAGCTGAGCGCCCTGCCCCACCTCCTGATGTTGACTATCCATTGGATGGAGCAAAGATTTTGCATATCAAGGGACCGATCAGGGATTCTGTGATTGAGATGCTGTTTGAGCAGGACAACGAGGAGAAGTCTGTCGCCACCTTGGTGCTGGACGCGCTGGTCAAGTGTCCGATTGACACGCGCAAGGCGCTCTCCGAGAACCTGGTCATCATTGGCGGCACCGCCATGCTGCCTGGCTTCCTGCACCGCCTCCTGGCAGAGATACGGCTGCTGGTGGAGAAGCCGCGGTACAAGCGGGCGCTGTCCACCAAGACCTTCCGCCTGCACAGCCCCCCGGCCAAGCCCAACTGCACAGCCTGGCTCGGAGGTGCCATATTTGGGGCTCTGCAGGACATCCTCGGCAGCCGCTCGGTGTCTCGGGATTACTACAACCAGATGGGTCGCATTCCTGACTGGTGCTCGCTGAGCAGCCCTCCCCCAGAGGCTGTGTACGATGCAGGCAAGACCCCCCCACCACTGATGAAGAGGGCCTTCTCCACAGAGAAGTGAACCCCTGTCCCTCTGCCCCTGGGTCCACCTCCTCCACCGTCCCCGCTTGCCTAAAAGGTCCAGGAGCTGGTGGGTCTGAAGGAGTGAGTTTGACTCAACGTGCTTTTCATTCCCAGCAGCTGCCCACCGATGCCCGTTGGACTGATGTGACATCACAATATGGGTGCCGCCTCCCCTCCTGTCACTGCAGTCCTGTTTCACTCAGCTGTACTAGCACTGTAATTTATTCTGGCCAGTTGTTGTGTTATCCACATGGGGACGGGTATTACACTACAATTCGGTGCCGTTTAACCCGCTTGTTTGTGCAATCAGCAGCGTCTGGACTAATGCCGGCTAATCTGTCGGGTCAAACCTGGCTGGTCACCTTGTACAATTATAATCTGCTGAAATAATAAACCTGCCATTGTTTGTGCCGTGCGTATGATTTTCTTCATCTATGACTCAGATCAAGATGTGCTTGTTACGTAGCGTTATTTTCATTCAGTTACTGGAAGTCATATGCAGCACGccattagaaaaaacaaaaacgtacagaacttatgttttcaattatatattgtaagaGTATGAAGAAGGTTCGTTGATCCTGAGCccctttcaaaaaataaatcatggtaGTTATGTACAGAAAAACTACATGGTAattttattcatattgtttttattttatttcactttgtgTGACTGACTCGAGCCATTTGCTTTCAATAgttagtgtattttatttaggcAGTATTCTTAAGGAATGATGTtataaatattctgaaataaatgtttatcacTGCTTCTTGTTGATTTTAAGTTATTATAATTGTACTAaggacattacattttttgaaaaccAGTATACATGCAATGAGCAAGAAAGAGATGCATATTTTTCCAcgtttgttttgaatttaataccttgttttttgtttatccttcgtaatacattattttatttgtatttgttttcctcctgtaACAAATACTATGAAATGGAATCGAATccaaggagggaaaaaaaaatcccagcaAAAGATTGCAAACTATATTTG

Function

symbol description
actr10 Acts upstream of or within central nervous system myelin formation and retrograde axonal transport of mitochondrion. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of dynactin complex. Is expressed in brain and posterior lateral line ganglion. Orthologous to human ACTR10 (actin related protein 10).

NR:

description
PREDICTED: actin-related protein 10

GO: NA

KEGG:

id description
K16576 ACTR10, ARP11; actin-related protein 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000410 True 2454 mRNA 0.48 13 14096501 14103897

Neighbor

gene id symbol gene type direction distance location
AMCG00000406 naa30 coding upstream 49731 14037644 ~ 14046770 (+)
AMCG00000407 NA coding upstream 62618 14029182 ~ 14033883 (+)
AMCG00000392 NA coding upstream 186569 13882218 ~ 13909932 (+)
AMCG00000402 peli2,LOC105026454,LOC106594164 coding upstream 226300 13856638 ~ 13870201 (+)
AMCG00000403 NA coding upstream 259311 13813065 ~ 13837190 (+)
AMCG00000411 NA coding downstream 53139 14157036 ~ 14159090 (+)
AMCG00000422 tmem63c,LOC107732232,LOC106611026 coding downstream 76939 14180836 ~ 14204787 (+)
AMCG00000424 NA coding downstream 120267 14224164 ~ 14228809 (+)
AMCG00000423 NA coding downstream 131343 14235240 ~ 14245576 (+)
AMCG00000421 aldh6a1,LOC102788717,LOC107586880,LOC107664467,LOC107739234 coding downstream 157512 14261409 ~ 14282672 (+)
G150106 NA non-coding upstream 350385 13739776 ~ 13746116 (+)
G150066 LOC100846954,LOC107575789 non-coding upstream 446450 13649403 ~ 13650051 (+)
G150042 NA non-coding upstream 683437 13412865 ~ 13413064 (+)
G149869 LOC105909576,LOC107704376 non-coding upstream 1254828 12833539 ~ 12841673 (+)
G149747 NA non-coding upstream 1998129 12092387 ~ 12098372 (+)
G150303 NA non-coding downstream 360995 14464892 ~ 14465302 (+)
G150364 NA non-coding downstream 629335 14733232 ~ 14733440 (+)
G150455 NA non-coding downstream 1020813 15124710 ~ 15125951 (+)
G150457 NA non-coding downstream 1033809 15137706 ~ 15137923 (+)
G150458 NA non-coding downstream 1050738 15154635 ~ 15155084 (+)
G150069 NA other upstream 403912 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 1065648 12966877 ~ 13030853 (+)
G149859 NA other upstream 1368598 12679670 ~ 12727903 (+)
AMCG00000352 NA other upstream 2101475 11965555 ~ 11995026 (+)
G149525 LOC100846954,LOC107575789 other upstream 3561364 10534590 ~ 10535137 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other downstream 29241 14133138 ~ 14153840 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 827881 14931778 ~ 14944400 (+)
AMCG00000514 NA other downstream 2707556 16811453 ~ 16814365 (+)
G150750 NA other downstream 2832096 16935993 ~ 16938282 (+)
G150811 NA other downstream 3441557 17545454 ~ 17548508 (+)

Expression


Co-expression Network