AMCG00000419


Basic Information

Item Value
gene id AMCG00000419
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14355891 ~ 14357921 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000419
ATGATTCAGAGACGTGAGATAGTGCAGGCTGTCCTGAGGGAGCTGCAGGATGCCACAGACTGCGTTGGCCTGGGGCAGCTGGTCAGTGTCGCCCTGGCTGTGGAACAGGCTCTCGCTGGATTCCTCCTGCCAGCGACCCACTGTCGGGACTTTGCAGCAGGAGTGGAGGTTGATGCGACTGCCCGGTGCCTTTACCCAGAAGACGCTCCCAGCGACATGCTCCCATTGTTCTGCAGAGGCGACGGTAACCTTCTGTTTGATGCTGCCAGCACCTTGCTGGTTGGGAACACCAGCCTCAGCTTGGAGCTTCAGGTGCGAACGGTAGTGGAGATGCTTCTGCGCAAACGCTACTATCTCAATGGAATGATCGACTCCAAAGTCATGCTGCAGGCTGCCAAGTTTTCCCTCTGCACGGAGGAGTCAGCCGAGAAATTGAATCTGCCCATGGTTGTGCTGGAGGCCATCTTTGATGCAGATGTGAAAGCGTCCTGTTTTCCTGGCTCATTTGCCAACATGTGGCATGTTTATGCCCTGGCGTCTGTTCTTCAGTGCAACATCTACTCTATTTATCCCATGTACAACCTGAAGATCCGGCCATACTTCAATCGCCTCATCCGGCCCAGAACCTGGCCACGGGAGTCAGACCCGATGACGCTCCACATCATGTGGTCCGGGGAAATGGAGTCGATGTCGGTGTTCAAACCTCAGCACTTTGTAGCCATCGTGAAGGCTCGTGACCTACAGATATGGATTCCGAATGGGGAGCACCATGCTCTTCCGTTAAAGACACTGGAGCTTTTGAACCAGGATCCACAGCTCTCCTACTCCAGTCTAAAATATAGGTACAACATCACGAAGAGCACCTTCTATCGCTGGAAGAAGCAGACGCAGGAGGTTAGAAAAAAAGCTGCTGCCCGGTATGAGGCCAAACACTTTCTACAGGCCTGCTATTCAGAGGGCAAGCTGCTACCTCTTCATCAGTTCAAAGAGTTCTTCCCTGAAATCTCCCGCTCAACCTACTATGCCTGGAAGCATGAGCTGCTGGCTGCTGGGGTTGACTTTGTGATGACTGGAAAGAAAGACGATTCGGGTCCGGGCGAAAGCTTTGAGCAAGAAGGCTGGTCACCTCCTGAAGGAAATCTCCGGTACTGCCATGACAATGGTGCTAGTCCAGCTGTCAATAGTGAGAAGCTTGCGGGAGACAAAGCGCAGAACCTCGCATTCATGCAAGAAGCCAAAAAGTGTTTGCAAAACTGCATCGCAATGAACACTTTGCTTCCATACAGACATTTCAACAGAAGTTTCCCTGGCATTTCAAGGTCAACGTACTACAACTGGAGGAGGGAAGCCTTGATGGCCAACCCCACTTTTAGAGATGCGTTTGTGAGCAGTGAAGACAGCCTGGATGCTGATAAAATCCTCAGTCCCAATAGACAGTCATCCCTGGTGACCACTGAGACCCTCTTGCCTGTTTCCAGGGTGAGCATTTACAAGCGTAGCCGGAAGAGTATCCGCTTCTCTCTCCTCAGGAGGAAGAAAGTCCGAGACCAGGCAAAGATGCAGGTTCAGAAGAGGAAAATGTCCTTTTGCAAGTTCAAAGTGAAGTATCCATCGATTTCTGCATGTTCATACTGGTTCTGGAGGAAGGATCTCGCTGACAAAAAAGTGGAAAAGCCCTTGGAGGCTAGTTTGCCCGAGCCCCCAGTTTGTGAGGAGCCGACAATCCTGGTAACTGAAGAAGTGCCCCCGTTGGAGAAGAGTAGTGGACAATTGAACGGCCAGTCTCTTGGTCCCTATAACGCAACGCTGTCTGGTTACACAGTTCCCGAGCCAAATGTGGGCTTTGTCATGGATGTCGTGGCCCTGGCAAACTTCAAGGCCAAAGCCAAGCTGTTCCTGCAGCAGCGCTTTGAAGAGAAGGCCTTTCCCACATACAAGGAGTTCAGGTCTTATTTCCCTCTCACGCCTCGCTCGACCTACTACATGTGGAAGAGGGCACTGCACCACGGGCTGCCATTAGTACATGGTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000419 True 2031 mRNA 0.52 1 14355891 14357921

Neighbor

gene id symbol gene type direction distance location
AMCG00000420 NA coding upstream 13728 14341500 ~ 14342163 (+)
AMCG00000416 LOC106608304 coding upstream 15844 14316161 ~ 14340047 (+)
AMCG00000417 lin52,LOC107594798 coding upstream 67572 14286016 ~ 14288319 (+)
AMCG00000421 aldh6a1,LOC102788717,LOC107586880,LOC107664467,LOC107739234 coding upstream 73219 14261409 ~ 14282672 (+)
AMCG00000423 NA coding upstream 110315 14235240 ~ 14245576 (+)
AMCG00000433 NA coding downstream 184336 14542257 ~ 14545457 (+)
AMCG00000431 LOC107732571 coding downstream 190741 14548662 ~ 14567052 (+)
AMCG00000432 NA coding downstream 209410 14567331 ~ 14572246 (+)
AMCG00000429 NA coding downstream 214803 14572724 ~ 14578029 (+)
AMCG00000430 NA coding downstream 222265 14580186 ~ 14585957 (+)
G150106 NA non-coding upstream 609775 13739776 ~ 13746116 (+)
G150066 LOC100846954,LOC107575789 non-coding upstream 705840 13649403 ~ 13650051 (+)
G150042 NA non-coding upstream 942827 13412865 ~ 13413064 (+)
G149869 LOC105909576,LOC107704376 non-coding upstream 1514218 12833539 ~ 12841673 (+)
G149747 NA non-coding upstream 2257519 12092387 ~ 12098372 (+)
G150303 NA non-coding downstream 106971 14464892 ~ 14465302 (+)
G150364 NA non-coding downstream 375311 14733232 ~ 14733440 (+)
G150455 NA non-coding downstream 766789 15124710 ~ 15125951 (+)
G150457 NA non-coding downstream 779785 15137706 ~ 15137923 (+)
G150458 NA non-coding downstream 796714 15154635 ~ 15155084 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 202051 14133138 ~ 14153840 (+)
G150069 NA other upstream 663302 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 1325038 12966877 ~ 13030853 (+)
G149859 NA other upstream 1627988 12679670 ~ 12727903 (+)
AMCG00000352 NA other upstream 2360865 11965555 ~ 11995026 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 573857 14931778 ~ 14944400 (+)
AMCG00000514 NA other downstream 2453532 16811453 ~ 16814365 (+)
G150750 NA other downstream 2578072 16935993 ~ 16938282 (+)
G150811 NA other downstream 3187533 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 3390589 17748510 ~ 17759582 (+)

Expression


Co-expression Network