AMCG00000421 (aldh6a1,LOC102788717,LOC107586880,LOC107664467,LOC107739234)


Basic Information

Item Value
gene id AMCG00000421
gene name aldh6a1,LOC102788717,LOC107586880,LOC107664467,LOC107739234
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14261409 ~ 14282672 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000421
AGCGCTTCCAAAGCTGTGTCGGCATTTTAATGTCAACTTAATAATATTctgattttgttattatttagcaaTGCCTaagaagaagggaaagaaaggaaagaaggGGAAAGGTAAAGGAAAGAAGAATGGGAAGCAGGAGTCTAAAGCTGATAAGGAGTCTGACATTGAGAAAGCAAAAGCCAATGCAGCCTTGTGGGAAGCCAGGCTGGACGTGACTGAACACTCCCGTATCGAGTACAGAGAGGTGGCCCGCAGATTGGCCAAGACCAACGAAGAACTCAGCAGCCAACAGTACCGCACGGAGAAGGACACGCTGGAGATCATGGCATTCATGAAGAAGAAGGACATTGAAAAAGATGAAATGattgcAAAATTAGAAGAAAAGCTTAGAGAACAAAAACGTGTGGCCAGAGAAGAGAAGGAGCAATTGGTGAAGGACTACACACTCAAACTGAATGAACTGGAGGAAAGGTTCAAGAAGAGATCCAATGAGTTCTCCATGATCCAGGGAGAGTTAAAGATGATTAAGGAGTTCCGGCAGAAGAAAGCTCATCTGGAGAAGGAGCTGGCGGATATGAGGGAGAGTATGTATGTTGCAGACAAAGATCACAAGGACACCCTGGCAAGAATGGAATACAAGTTATTTTCAGAGAAGTGTCGCCTGGAGAAGGAGGCTGAGCTGAGGATTGCACAGCTGGCAGAGCGAGCGCACAATGAGGCTATTGTGCAACTGGATGATGCTGCTCGCTCTGTCTTCAAGGAAAACGTCAGACTTAATGAAGCACTGAGCTACCACATGAAAGAAGCAGaggaattaaagaaaatgacagTGGCCCTGGCAGAGGAAAATGACACCCTTGCACAGCACAAGGAGACCAGCGAGCTGCTTGTGCAGGAGAAGGTGTCCCAGCAGAAGCAACAGAAGGAGGAGATCAAGGAGTTACAAGAGAAGGTGGCTGCCCTGGAGCAGGCCCTGGAGCTGATGACCAGAGAGTTTGAAACCGAGAAGCACAGCACCCAACAGCAGGCCCTCCTCACCACAGAGGCAGGCCGCGTGGAGATCGCCAAACTCCAGAAGCTGCTGGGCATGAAGGACCGCGAGATGAACCGGGTGAAGAAGCTGGCGAAGAACATCGTGGAGCAGCGCACCGAAGTGGAGCGCTTCTTCCTGGAGGCGCTGGCCCAGGTCAAGCAGGAGATCCAGGCCAGCCGGGCGCAGTACCAGCGGGCGGCGCAGGAGGCCTACCTGAGGAGGATGCAGGAAGGCCGCGGGGGGAGGCAGGAGTATCCCCGGATCAGGACGTTCACCAAGAGCCAGCACAGCACCAACAGCGTCTTCACCGACCTTCAGGAAGCAGAGAAGTGGACTAATGTGCAGAGCGGCAGGATTGACATCTCTGAACTGACATGGGAGCAGAAGGAGAAAGTTCTGAGACTACTCTTCGCTAAAATGAATGGACTCACATCAAGgaaaccCATCCAAACCCTGTCTTTATCTGCACCACCTGAAAGAGATGAAAAAGCAAGTGATTCAAGGGCTCAGGACGAGGCGCCCAGTCTGACATTCATCACGCAGGCGGCAGTGTCTGCTTTGCCACCTCACGCCACCGTGCTGCCAGATATCCAGGcaacatgacacacacacaaagataacCATACAAACACGGCCTTTGAGCGTGCCCTGAAATTAGAGTCTTCACATTCCTAGAGAACAAGGAAAATATGTAGCATTCAGTAAATTAAACGTTTTTGATGTGACGTATTCACTGAATTTAAACAACCAAAACTTGTCCAATTTGCTTAgtcatttcctttccttttataACTACTCTTTTTCACTTGACAGAGAGCAATGATGCAGCGTTTGATCTTATTTGCGTCACTGCAGATTCACAGTGATTCTGGAGGAAATTAGACGTATACATTTAAGACGTGCATTTACGTGAAATAAAtttgtgattttgaaattaTGCCCATAATAACAAAATACTATACAATAAAGTATAGTATAATAGTTCCAGATGATAATATTGTTCAGTACTATACATCACATCCTAAACATTATTGAATCAATTCCATCACGCAAAATGCAAGTCTTGGCTTCAGGACTAAAATGGAGATATTTTACTATTGCCACATCaatctgtttgtttgatttgccATTTTAGAACCAAGCCTAAAAAATGTTATCATCTGGAAATATCCAAGTGCTTTTCTGTAAAGAGAGACATAGGGATAGTAGGTAGTTCTGCTCTACTTTGCATCATCACAAAAACGCAGTTTGATGACTGTAGACTTGTGACCGCTACAtttgtgtgaaatgtaaaatggcCCACCATAGCACGTGTGAAGGTtaagattaaaacaatatactCACAGTCCCAAAGAAAATCTGATAGGAGACATTTTTATTGAACCTGAATCTTTATTTGATGACAGGACAGCCACTGCATTTAGTGAAAATGCATTAGTAATCAACAATCATACAGaagacacattatttttttgtcagtatTCAAGAGAACACTCTAAAACAAGATACATTCCATCAGCAAGGAGTACAGTCATCCCAATATCATCGATGTGATATTCAGTGACTTTGTGAAGCACTGTACACTACTAATAGAGGACGGGTATAATTTCAGTCATTTTCACATAAGTCACTTGAGGTACGGTATTGGAACATGGCAAATAGCCATCATATCATGGAGTAGAACATTGTGTAGTATAACCTTAAACCATTCTTGTGGTATTTTAATGCATCCTTTCAATTCTAAAGCACCTTTCTTCAGAAAGTAATCTAGTAAGGCACTCTCTGCCTATTCTACCTTGTGGATAACCCAGGATGAGACTCATTTTCACAATACTTACCAAGGATCTATGATAATGCAAATCTAAATCACTACGAAAGAAGACATCACCCCTTTGATATTACCCATCTGAACACTGAGGCCTGTCCGTCAGGTTTTGAGTTAACTTCTTTTCCAGAACAATGGCGGAATTGTGGGTTTTTGCATCCAATGGGAACAGGTTCACTGCAGGCTCTCCTAACGTCCCATGGTTGGCATTACAACGGCCGGGCTTGTCAGAGTGGCATCCTCCTCTTTCCACTGAGATGTGACGGTCTTGATATGGGTGTAAAACTGAATTCCCTGAGAAGAGGAAGGACACCACCTTAGAACTGAAGCCTCTCTTTTCTAACCTTCCATTGTGCTCCACCTAACTGTGAGGTGAGCAATGAGtgccatttcaaatgtaatttacaataGTTTGTCTATTCCAAATAAGGCACAAAAAGTCCCTTTAATTTAGCGTCTACTATGCAGAAATCGTTCTTACAAAGGATAactcattttcacattttaaagttaatataaaaagcctttgtttaaaaattgatcgaagaaaagaaaagaaaactcacTTGTTTCCCATAGAAGTTGGTGTCTCCTCTGAAGGAGGCCCGAGACCCAGTGAAGGAGAACATGGGCAGTGGGACAGGGATGGGTACATTAACGCCAACCTACAGACAGCACAACATGCGTCATAACATACAggcaaatataaaatgacactATCAGTGAAGCCAACTATGGGGCAACCCAAGTTCATGATGATATTACTTaggaaatgtaattcaaaacCTAGTATTGTCAGCCTGGCAGTGGCAACAAAGGCTTGCCATGCAGATCTATTGAGGGCAGTAGATTCCAGACAATACACAACATCATCATGGGGTGGCAAAGCGAACAACAATCCAAGCGACACAGATGAGCCACCAGAATAGAGCCCCCATCCACCCAGTTCACACACCACCTCCATAGCCACATAGCCCcatcccctcctccctccccaacCCTTCACGCAGCAGACATCATCAATTTCAATAGACATCCAAAGAgataaaaaatagattaaaatcaTAAGCAGTACACATACTAATGTTATGCCTATTGGCTTgtcaaatatacacacacaaaaacaagaattcAATATGGAGTTTTCATCGCGATGCCTTTTATAACGCAAAACAATGCTATTGTTGTCATGACTGAAAACTGCATTTCTTAATCTGGAGGGGTTGTTAAAACGTGGGAGTAATTCTGTAAATAGAAACTTGTCCTCTCTGGCGGGAAAGACATCAAAACATTGGTTTCATTGCAGTGAGCATCAGAGACATTTGCTTAGCCTTGAAATATTGTAAAGGGAAGCAAAAAGTGCTGTGATCCACCCGTTAAATGAGATGTCAAAAAAAGGGcatcatttcttaaaataaaaataaataaatcaaattcttaaaatgttaaaacctCTTTTTTATGACTAGTGTTGACAGCTCCCAAGGAATCCCTCAGAGTATTACAAGGATGCTTTGTGAAGAATAAAGTTTTGCATTCTCTAATTACACGTTGAAAGTAGTAAACCTCATTCGTCTGCCATAGCAGAATGTGCAGAGCTGctcaataaatcaaattatgcGATGCCTTTGTGATGTGATACCTCCCTATTTTTTCAAGATCAAGACTTGCCCTACACTGGAAAAGTTCAAGCTCAGCTGTGTTAGTGAACAAACCCCTTTGTCACAAATCAGTGCCGACGGGTATCCTCTCACCTGTCCCACGTCCACCTCGTGTGTGTATTTGCGCGCAGTAGCTCCATTCGTGGTGAAGATGGCAGTGCCATTGCCGTAGGGGTTGCGGTTCACAATATGAATGGCTTCATCTAGATTGCTGGCCTCCAGAACCACCAAGACCGGGCCAAAGATCTCCTCTGTGTAGCATTTCATACTGGACTAAAGGGCAGAGGGGACATTTTGGATTTATAAATAAAGGTGAAACAGAAGATCACAAGCAGACCATGTACCTGCAGACTTCTAATGTCTTCCTTTATCCCTCAATATGATACATAAGCAACTTAAGAAGCAAACCACCATAGGCCACCTAGAGTAGAGTCAGAACTGACCTGCCCTCaagtcacaaattacaaacctgtatctTACTGCCCTGTTATTTAAAAGCAGGGTAGTGATATTTTGAGTAGCAGTGATTTAAGCTCATGTTCCTTACTTTGACTTGACTCAGGATGGTGGGTCCCACGAAGTTTCCGTTCTCATAGCCCTTCACCTGGACATCCCTCCCGTCCAGCAGCAGAGAGGCGCCCTCATCCACGCCACTCTGGATCAGAGCGTTCACTCGCTTCCTGGCCTCAGGGGAGATGAGGGGCCCCACATCAGCCCCAGGTTGGTCACCTGGGGGCCACAGAATCTGAGATCAGACCAGGGAGCCAGGAAGTAGGTACACTTTGATGGCACGTAAATGTGGTCCCATATAAAAGTCTTTGAGAAGGCTacatattattatgatgataatttgtgatgatgatgatttttcttggaagacgcccttatccataatttacaaatgttacatatcaaatatatatattttttttactttaaaagacCCCACAAGGGTAATCACATGACAGGCAGGAAACGGTACCTGAGTTGACCTGGAGTTTCTTCGCCCTCTCCACCAGCTCTGGCAGCCAGGACCTGGCCTCGCCCACCAGGATGGCAGTGGACAGGGCCATGCAGCGCTGCCCCGCCGCCCCAAACGCAGCCCCCACCAGCTGGTTCAGGGTGTTCTCTTTGTTGGCGTCGGGCATCACCACGCCATGGTTCTTTGCTCCCTGAGAATGCCAGAAAGTTTAGTGCTAGAGAGAGAGCCACAGGCTGGAGGATTTCAACTTAAAAGTTCTTACAACAAAGACTAATTTTGCCCGTCTTGCTTGTCTGGTTGATATTTATTACCCAAGTCCAGTAGTGAAACATTCTAGAACACTGCATAGGCCCACTTCTCTACATTAAAGGGTAAATCCAAAAACTAACATATAAAGCATCCCACCTTGCAGTTTCAAACGTATTTGGTCAGTGTTTAATAATGATATGCTGCATAACATTTGCATAATGTCAAAGTGCCAATATTCCAGATCTGTAATATTATTGGCAGTTCTTGTAAAAAGTTAGGTCCCAATAAAGCTGCCAATATAGCCCTCCTCCAGCCCCCACAGTAATTGGAGACGACATGGACAAATTCTCTCAGTGAGCTTCATTTCTGCTACACAACTTTTAAACTGTGCTGCCATCTTCTGGcccaaaagagaaaaatgaaagttGTGGGGGTTTTTTAGGTCCTGTAACACATATGAAGCTTACCATGTTGGACTGCACTCTCTTGCCATGTTTGGATCCCCTCTCATAGATGTACTCCCCCGCCTGGTTGGAGCCCACGAAGCTGATTGCCTTAATGGCAGGATGTTCACAGATAAAGTTCACCGCGTCGTGCTGGCCATGTATGATGTTGAGCGTGCCGTCAGGGGCCCCCGCGTCCTGCAGGAGCTTGGCCAGCAGCATGGTGGCCCCCGGCACCCTCTCGGACGGCTTCATCAGGTAGGTGTTCCCGCAGACCATGCCCATGGGGTACATCCACAGCGGGATCATGGCGGGGAAGTTGAAAGGCGCGATGCCCGCACACACGCCCAGGGGCAGGCGGTATGTGAAGGTGTCCATGTCCTTGGTGATGGAGGGCAGGGTCTCCCCCAGCATCAGAGATGTGATGCTGCAGGTGTGCTCCACcacctctgcaaaacaggaGCGGCCCGTCAGCACCCGTGGGACTCGACTACGCCCAGCCCCCCAGAGCTGCGGCTCAGACCCACTGAAGAATACATCGCGATACAGAAATCTGAACTCAGCCACACCTCCTGAACTTCACATCGAAAGGAAGCCATAATTTCAAACGGCTTGGACTGAAAGttagattatttttcttcacatcGATACATTCGCACATGTCTAATACATTCGTATGGATCGGCTAAGTGTCAAAAGGACAAAATGACTCTTTAACTCACGCAATCCTCTGAACACGTCTCCCTCCGCATCTGCCAGGGTCTTCCCCTGCTCCAGGGTGATCAGCTTGGCAATCTCTTTCTGGTTGTCTTTGATGAGCTGCTGGTAGCGCAGAAAGATCTGCTGGCGGCTGAGGACTGACGTCTCAGACCAGGAGTGGAAGGCCTTAGTGCAGGAGTTCACCGCTGCAGTCATCTCCTCCTGGGTGGCTTTAGGGACCCGACCGATCACCTCATTGGTGGCCTTCGGTGGATAAAACCAGAATGTGATTTGAAACAGGACTACTACAAAGTACAAACGTTGGTTTCAAcaactttaattttattatatttttccatgtGCTTTCATCCAATCGATAGGTTCTGAAAGGGTGGACTTACTCTTTGCTAAAAACGTTGAGACCCAACGCTCTCTGGATATCCACATTTCTCTCGCCGCCATCAAATTGAGCCatcaaaaactaaatttaacaCTTAAAGGAATCGATTTCCTGCTTTAGAAATCAGTGTTAGCACGCTTAGTAGCCATAATgactatatattttactttatgatTAAGGTATAATCTAAATATGTCCTGTAGATGCTTTTGGAAGGTATTATTTGGCAAAGGCCACAGCAAACTGAATGAACATGGCAGTTTTGGAGCAAGTATTGCTCTGCACTGCCAAATGTACTGCTCCTCACTACTGGAAGTCATGTGTAAACTGCATTATCACAAATATGGTGCGTGTTATTGGATTAATGGGTAGTAAAGTATAGACCACATTATGGCAAAAACATGTCGTTTGAAACAGTGTTATTCTAGGACTACCTATACTTGCATGTATATTTCATTCTGTGAAAGAGTCATTGAATGAAGTGAAACTAGAACCATTTTGAAATCAAGGTTGACCTTTAGAACCTGCTTTCAGCAAAAAGACCCATGACCTCAGGCTCAGAAGATAAACTGCTTACACATTTAAACCGTGGCCTCCATGATAATTTCTAATAAGCAGAACTACAGTTGCTACTAATACAAGATCTGTTCCCTTTCAAAGAAAACTTGAATGCATTAATGATCAATTTCAGAACCAAGTCAAAGATGTGCTGTtgaaactgtatattttctcagTTGGCTGGGGTTTTCAGTAACTTAGTCAGCTGAATGTTGGTTAATAATTAGTTGAAGTGGAAGAATCCAGATCTTTAATTAAACTGGCATGGAAGGGATTCTTAAGAAGATTAAAGCAATCTAATGTTCACAGACTGAAGCTGattaaaacaacatataatGGATAAATCAGTCATCTGTGTGTAACTCATTACATCAAGGCAGGTGTGTGTAATTAACCTCCTTCGTATAGCAGTAGACACTATGGGCTTTTGAAAAGTGAAATTGTCAAGTCTGCCAGATATACTGtcaattaaattcattattaaatCC

Function

symbol description
aldh6a1 Predicted to enable malonate-semialdehyde dehydrogenase (acetylating) activity and methylmalonate-semialdehyde dehydrogenase (acylating) activity. Predicted to be involved in thymine catabolic process and valine catabolic process. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; digestive system; midbrain; musculature system; and ventricular zone. Orthologous to human ALDH6A1 (aldehyde dehydrogenase 6 family member A1).

NR:

description
methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000421 True 8338 mRNA 0.44 13 14261409 14282672

Neighbor

gene id symbol gene type direction distance location
AMCG00000423 NA coding upstream 15833 14235240 ~ 14245576 (+)
AMCG00000424 NA coding upstream 32600 14224164 ~ 14228809 (+)
AMCG00000422 tmem63c,LOC107732232,LOC106611026 coding upstream 56622 14180836 ~ 14204787 (+)
AMCG00000411 NA coding upstream 102319 14157036 ~ 14159090 (+)
AMCG00000410 actr10,LOC106571574,LOC106608088 coding upstream 157512 14096501 ~ 14103897 (+)
AMCG00000417 lin52,LOC107594798 coding downstream 3344 14286016 ~ 14288319 (+)
AMCG00000416 LOC106608304 coding downstream 33489 14316161 ~ 14340047 (+)
AMCG00000420 NA coding downstream 58828 14341500 ~ 14342163 (+)
AMCG00000419 NA coding downstream 73219 14355891 ~ 14357921 (+)
AMCG00000433 NA coding downstream 259585 14542257 ~ 14545457 (+)
G150106 NA non-coding upstream 515293 13739776 ~ 13746116 (+)
G150066 LOC100846954,LOC107575789 non-coding upstream 611358 13649403 ~ 13650051 (+)
G150042 NA non-coding upstream 848345 13412865 ~ 13413064 (+)
G149869 LOC105909576,LOC107704376 non-coding upstream 1419736 12833539 ~ 12841673 (+)
G149747 NA non-coding upstream 2163037 12092387 ~ 12098372 (+)
G150303 NA non-coding downstream 182220 14464892 ~ 14465302 (+)
G150364 NA non-coding downstream 450560 14733232 ~ 14733440 (+)
G150455 NA non-coding downstream 842038 15124710 ~ 15125951 (+)
G150457 NA non-coding downstream 855034 15137706 ~ 15137923 (+)
G150458 NA non-coding downstream 871963 15154635 ~ 15155084 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 107569 14133138 ~ 14153840 (+)
G150069 NA other upstream 568820 13690839 ~ 13692589 (+)
AMCG00000381 NA other upstream 1230556 12966877 ~ 13030853 (+)
G149859 NA other upstream 1533506 12679670 ~ 12727903 (+)
AMCG00000352 NA other upstream 2266383 11965555 ~ 11995026 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other downstream 649106 14931778 ~ 14944400 (+)
AMCG00000514 NA other downstream 2528781 16811453 ~ 16814365 (+)
G150750 NA other downstream 2653321 16935993 ~ 16938282 (+)
G150811 NA other downstream 3262782 17545454 ~ 17548508 (+)
AMCG00000525 NA other downstream 3465838 17748510 ~ 17759582 (+)

Expression


Co-expression Network